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Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3721 39.61 0 4462992..4464902 - 636 114564908 - Sfri_3756 - regulatory protein CsrD 3722 42.55 0 4465106..4466353 - 415 114564909 - Sfri_3757 - malate dehydrogenase 3723 39.91 0 4466787..4466999 - 70 114564910 rpmE Sfri_3758 - 50S ribosomal protein L31 3724 39.72 0 4467142..4468377 - 411 114564911 - Sfri_3759 - hypothetical protein 3725 40.26 0 4468667..4469503 - 278 114564912 - Sfri_3760 - hypothetical protein 3726 46.13 +1 4469588..4471783 + 731 114564913 - Sfri_3761 - primosomal protein N' 3727 44.04 0 4471963..4473708 + 581 114564914 argS Sfri_3762 - arginyl-tRNA synthetase 3728 45.50 +1 4473711..4474310 + 199 114564915 - Sfri_3763 - sporulation domain-containing protein 3729 43.24 0 4474481..4475005 + 174 114564916 - Sfri_3764 - ATP-dependent protease peptidase subunit 3730 43.29 0 4475031..4476356 + 441 114564917 hslU Sfri_3765 - ATP-dependent protease ATP-binding subunit 3731 41.86 0 4476532..4476918 + 128 114564918 - Sfri_3766 - hypothetical protein 3732 39.87 0 4476962..4477267 + 101 114564919 - Sfri_3767 - hypothetical protein 3733 47.92 +1 4477529..4477816 - 95 114564920 - Sfri_3768 - hypothetical protein 3734 32.31 -2 4478111..4478890 + 259 114564921 - Sfri_3769 - hypothetical protein 3735 42.62 0 4479098..4480141 + 347 114564922 - Sfri_3770 - transposase IS116/IS110/IS902 family protein 3736 43.61 0 4480959..4483556 - 865 114564923 - Sfri_3771 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 3737 45.05 0 4483962..4484618 + 218 114564924 - Sfri_3772 - 2-deoxyglucose-6-phosphatase 3738 42.91 0 4484950..4487214 - 754 114564925 - Sfri_3773 - patatin 3739 40.93 0 4487323..4491786 - 1487 114564926 - Sfri_3774 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 3740 42.28 0 4492187..4493617 - 476 114564927 - Sfri_3775 - dihydrolipoamide dehydrogenase 3741 46.25 +1 4493817..4495814 - 665 114564928 - Sfri_3776 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 3742 43.87 0 4495826..4498492 - 888 114564929 aceE Sfri_3777 - pyruvate dehydrogenase subunit E1 3743 45.68 +1 4498584..4499336 - 250 114564930 pdhR Sfri_3778 - transcriptional regulator PdhR 3744 40.85 0 4499635..4500486 - 283 114564931 - Sfri_3779 - regulatory protein AmpE 3745 44.68 0 4500612..4501166 - 184 114564932 - Sfri_3780 - N-acetyl-anhydromuranmyl-L-alanine amidase 3746 44.48 0 4501586..4502464 + 292 114564933 - Sfri_3781 - nicotinate-nucleotide pyrophosphorylase 3747 40.94 0 4503464..4503910 + 148 114564934 - Sfri_3782 - methylation site containing protein 3748 42.77 0 4504003..4505709 + 568 114564935 - Sfri_3783 - type IV-A pilus assembly ATPase PilB 3749 41.51 0 4505817..4507076 + 419 114564936 - Sfri_3784 - type II secretion system protein 3750 41.96 0 4507106..4508032 + 308 114564937 - Sfri_3785 - prepilin peptidase 3751 42.06 0 4508029..4508658 + 209 114564938 - Sfri_3786 - dephospho-CoA kinase 3752 38.64 -1 4508651..4509385 + 244 114564939 - Sfri_3787 - hypothetical protein 3753 40.18 0 4509422..4509640 + 72 114564940 - Sfri_3788 - hypothetical protein 3754 39.14 0 4509664..4510059 + 131 114564941 - Sfri_3789 - mutator MutT protein 3755 45.69 +1 4510983..4511516 - 177 114564942 - Sfri_3792 - ISSod10, transposase OrfB 3756 40.00 0 4511530..4512009 - 159 114564943 - Sfri_3793 - ISSod10, transposase OrfA 3757 46.18 +1 4518767..4519303 - 178 114564944 - Sfri_3794 - ISSod10, transposase OrfB 3758 40.42 0 4519317..4519796 - 159 114564945 - Sfri_3795 - ISSod10, transposase OrfA 3759 41.20 0 4526231..4528951 - 906 114564946 - Sfri_3796 - preprotein translocase subunit SecA 3760 43.11 0 4529010..4529909 - 299 114564947 - Sfri_3797 - peptidase M23B 3761 43.05 0 4529937..4530389 + 150 114564948 - Sfri_3798 - hypothetical protein 3762 42.89 0 4530394..4531314 - 306 114564949 lpxC Sfri_3799 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3763 46.36 +1 4531525..4532691 - 388 114564950 - Sfri_3800 - cell division protein FtsZ 3764 44.82 0 4532718..4533953 - 411 114564951 - Sfri_3801 - cell division protein FtsA 3765 40.73 0 4533950..4534720 - 256 114564952 - Sfri_3802 - polypeptide-transport-associated domain-containing protein 3766 44.51 0 4534842..4536299 - 485 114564953 - Sfri_3803 - UDP-N-acetylmuramate--alanine ligase 3767 43.84 0 4536301..4537404 - 367 114564954 - Sfri_3804 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 3768 44.94 0 4537404..4538618 - 404 114564955 - Sfri_3805 - cell division protein FtsW 3769 44.14 0 4538608..4539930 - 440 114564956 - Sfri_3806 - UDP-N-acetylmuramoylalanine--D-glutamate ligase 3770 43.67 0 4539953..4541035 - 360 114564957 - Sfri_3807 - phospho-N-acetylmuramoyl-pentapeptide-transferase 3771 44.78 0 4541036..4542424 - 462 114564958 - Sfri_3808 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase 3772 43.33 0 4542421..4543911 - 496 114564959 - Sfri_3809 - UDP-N-acetylmuramyl-tripeptide synthetases 3773 44.43 0 4543898..4545646 - 582 114564960 - Sfri_3810 - peptidoglycan glycosyltransferase 3774 42.86 0 4545658..4545972 - 104 114564961 - Sfri_3811 - cell division protein FtsL 3775 43.31 0 4545987..4546928 - 313 114564962 mraW Sfri_3812 - S-adenosyl-methyltransferase MraW 3776 44.23 0 4546954..4547412 - 152 114564963 - Sfri_3813 - cell division protein MraZ 3777 46.11 +1 4548550..4548870 + 106 114564964 - Sfri_3814 - hypothetical protein 3778 45.89 +1 4548883..4550379 - 498 114564965 - Sfri_3815 - glycerol kinase 3779 44.86 0 4550575..4551927 - 450 114564966 - Sfri_3816 - membrane protein involved in aromatic hydrocarbon degradation 3780 42.24 0 4552406..4553011 - 201 114564967 - Sfri_3817 - isopropylmalate isomerase small subunit 3781 46.50 +1 4553031..4554443 - 470 114564968 - Sfri_3818 - isopropylmalate isomerase large subunit 3782 45.11 0 4554443..4555537 - 364 114564969 - Sfri_3819 - 3-isopropylmalate dehydrogenase 3783 43.21 0 4555534..4557102 - 522 114564970 - Sfri_3820 - 2-isopropylmalate synthase 3784 38.27 -1 4557707..4559470 + 587 114564971 - Sfri_3821 - hypothetical protein 3785 44.16 0 4559475..4561322 - 615 114564972 - Sfri_3822 - ATP-dependent DNA helicase RecQ 3786 43.44 0 4561524..4561988 + 154 114564973 - Sfri_3823 - hypothetical protein 3787 42.24 0 4562113..4563021 + 302 114564974 - Sfri_3824 - transporter DMT superfamily protein 3788 43.94 0 4563137..4564456 - 439 114564975 - Sfri_3825 - N-acetylglutamate synthase 3789 34.48 -2 4564933..4565106 - 57 114564976 rpmG Sfri_3826 - 50S ribosomal protein L33 3790 40.93 0 4565113..4565349 - 78 114564977 - Sfri_3827 - ribosomal protein L28 3791 43.22 0 4565471..4566148 - 225 114564978 - Sfri_3828 - DNA repair protein RadC 3792 46.30 +1 4566645..4567847 + 400 114564979 - Sfri_3829 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3793 45.10 0 4567844..4568302 + 152 114564980 dut Sfri_3830 - deoxyuridine 5'-triphosphate nucleotidohydrolase 3794 42.42 0 4568338..4568931 + 197 114564981 slmA Sfri_3831 - nucleoid occlusion protein 3795 38.99 0 4569073..4571052 + 659 114564982 - Sfri_3832 - peptidase S9 prolyl oligopeptidase 3796 41.18 0 4571310..4573259 + 649 114564983 - Sfri_3833 - peptidase S9 prolyl oligopeptidase 3797 44.09 0 4573438..4574088 + 216 114564984 folE Sfri_3834 - GTP cyclohydrolase I 3798 44.39 0 4574174..4574815 - 213 114564985 pyrE Sfri_3835 - orotate phosphoribosyltransferase 3799 44.12 0 4574888..4575601 - 237 114564986 - Sfri_3836 - ribonuclease PH 3800 47.22 +1 4575779..4576642 + 287 114564987 - Sfri_3837 - hypothetical protein 3801 44.06 0 4577027..4578313 + 428 114564988 - Sfri_3838 - hypothetical protein 3802 48.68 +2 4578345..4580357 + 670 114564989 - Sfri_3839 - peptidase S15 3803 43.51 0 4580743..4581951 + 402 114564990 - Sfri_3840 - hypothetical protein 3804 44.42 0 4582173..4583489 + 438 114564991 - Sfri_3841 - anaerobic C4-dicarboxylate transporter 3805 39.58 0 4584098..4587283 - 1061 114564992 - Sfri_3842 - type III restriction enzyme, res subunit 3806 44.72 0 4587369..4588475 - 368 114564993 - Sfri_3843 - filamentation induced by cAMP protein Fic 3807 42.40 0 4588709..4589491 + 260 114564994 - Sfri_3844 - hypothetical protein 3808 45.98 +1 4589571..4591001 - 476 114564995 - Sfri_3845 - twin-arginine translocation pathway signal 3809 32.58 -2 4591050..4591316 - 88 114564996 - Sfri_3846 - hypothetical protein 3810 47.79 +1 4591486..4593678 - 730 114564997 - Sfri_3847 - glucosyltransferase MdoH 3811 45.60 +1 4593681..4595360 - 559 114564998 mdoG Sfri_3848 - glucan biosynthesis protein G 3812 42.18 0 4595914..4596885 + 323 114564999 - Sfri_3849 - alpha/beta hydrolase fold 3813 40.44 0 4596891..4597889 + 332 114565000 - Sfri_3850 - lipase chaperone-like protein 3814 43.82 0 4598671..4600806 + 711 114565001 - Sfri_3851 - TonB-dependent siderophore receptor 3815 42.31 0 4601031..4602434 - 467 114565002 - Sfri_3852 - methyl-accepting chemotaxis sensory transducer 3816 40.94 0 4602762..4603550 - 262 114565003 - Sfri_3853 - transcriptional regulator, AraC family protein 3817 44.91 0 4603654..4604862 + 402 114565004 - Sfri_3854 - major facilitator transporter 3818 44.08 0 4605045..4605593 - 182 114565005 - Sfri_3855 - HPP family protein 3819 39.71 0 4605757..4606665 - 302 114565006 - Sfri_3856 - hypothetical protein 3820 47.46 +1 4606677..4607504 - 275 114565007 - Sfri_3857 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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