version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3693 44.67 0 4428869..4430041 - 390 114564880 - Sfri_3728 - hypothetical protein 3694 46.16 +1 4430054..4431043 - 329 114564881 - Sfri_3729 - secretion protein HlyD family protein 3695 44.35 0 4431033..4432466 - 477 114564882 - Sfri_3730 - outer membrane efflux protein 3696 46.03 +1 4432650..4434098 - 482 114564883 - Sfri_3731 - peptidase U62, modulator of DNA gyrase 3697 46.45 +1 4434194..4435024 - 276 114564884 - Sfri_3732 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3698 42.57 0 4434948..4439279 - 1443 114564885 - Sfri_3733 - hypothetical protein 3699 43.59 0 4439279..4440769 - 496 114564886 - Sfri_3734 - ribonuclease G 3700 44.90 0 4440851..4441438 - 195 114564887 - Sfri_3735 - maf protein 3701 43.29 0 4441496..4441987 - 163 114564888 - Sfri_3736 - rod shape-determining protein MreD 3702 45.28 +1 4441984..4442946 - 320 114564889 - Sfri_3737 - rod shape-determining protein MreC 3703 46.67 +1 4443010..4444059 - 349 114564890 - Sfri_3738 - cell shape determining protein, MreB/Mrl family protein 3704 41.07 0 4444252..4448850 - 1532 114564891 - Sfri_3739 - hypothetical protein 3705 45.61 +1 4448840..4449295 - 151 114564892 - Sfri_3740 - MSHA biogenesis protein MshP 3706 42.03 0 4449285..4450112 - 275 114564893 - Sfri_3741 - methylation site containing protein 3707 43.20 0 4450112..4450648 - 178 114564894 - Sfri_3742 - methylation site containing protein 3708 42.50 0 4450638..4451117 - 159 114564895 - Sfri_3743 - methylation site containing protein 3709 42.15 0 4451358..4451879 - 173 114564896 - Sfri_3744 - methylation site containing protein 3710 42.08 0 4451945..4452550 - 201 114564897 - Sfri_3745 - methylation site containing protein 3711 39.90 0 4452660..4453238 - 192 114564898 - Sfri_3746 - hypothetical protein 3712 41.73 0 4453283..4454497 - 404 114564899 - Sfri_3747 - type II secretion system protein 3713 44.12 0 4454500..4456260 - 586 114564900 - Sfri_3748 - type II secretion system protein E 3714 44.21 0 4456257..4457534 - 425 114564901 - Sfri_3749 - TPR repeat-containing protein 3715 40.11 0 4457549..4458493 - 314 114564902 - Sfri_3750 - MSHA biogenesis protein MshM 3716 42.91 0 4458563..4460233 - 556 114564903 - Sfri_3751 - pilus (MSHA type) biogenesis protein MshL 3717 40.67 0 4460247..4460573 - 108 114564904 - Sfri_3752 - MSHA biogenesis protein MshK 3718 40.49 0 4460554..4461210 - 218 114564905 - Sfri_3753 - MSHA biogenesis protein MshJ 3719 41.35 0 4461207..4461755 - 182 114564906 - Sfri_3754 - hypothetical protein 3720 40.40 0 4461824..4462729 - 301 114564907 - Sfri_3755 - biogenesis protein MshI 3721 39.61 0 4462992..4464902 - 636 114564908 - Sfri_3756 - regulatory protein CsrD 3722 42.55 0 4465106..4466353 - 415 114564909 - Sfri_3757 - malate dehydrogenase 3723 39.91 0 4466787..4466999 - 70 114564910 rpmE Sfri_3758 - 50S ribosomal protein L31 3724 39.72 0 4467142..4468377 - 411 114564911 - Sfri_3759 - hypothetical protein 3725 40.26 0 4468667..4469503 - 278 114564912 - Sfri_3760 - hypothetical protein 3726 46.13 +1 4469588..4471783 + 731 114564913 - Sfri_3761 - primosomal protein N' 3727 44.04 0 4471963..4473708 + 581 114564914 argS Sfri_3762 - arginyl-tRNA synthetase 3728 45.50 +1 4473711..4474310 + 199 114564915 - Sfri_3763 - sporulation domain-containing protein 3729 43.24 0 4474481..4475005 + 174 114564916 - Sfri_3764 - ATP-dependent protease peptidase subunit 3730 43.29 0 4475031..4476356 + 441 114564917 hslU Sfri_3765 - ATP-dependent protease ATP-binding subunit 3731 41.86 0 4476532..4476918 + 128 114564918 - Sfri_3766 - hypothetical protein 3732 39.87 0 4476962..4477267 + 101 114564919 - Sfri_3767 - hypothetical protein 3733 47.92 +1 4477529..4477816 - 95 114564920 - Sfri_3768 - hypothetical protein 3734 32.31 -2 4478111..4478890 + 259 114564921 - Sfri_3769 - hypothetical protein 3735 42.62 0 4479098..4480141 + 347 114564922 - Sfri_3770 - transposase IS116/IS110/IS902 family protein 3736 43.61 0 4480959..4483556 - 865 114564923 - Sfri_3771 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 3737 45.05 0 4483962..4484618 + 218 114564924 - Sfri_3772 - 2-deoxyglucose-6-phosphatase 3738 42.91 0 4484950..4487214 - 754 114564925 - Sfri_3773 - patatin 3739 40.93 0 4487323..4491786 - 1487 114564926 - Sfri_3774 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 3740 42.28 0 4492187..4493617 - 476 114564927 - Sfri_3775 - dihydrolipoamide dehydrogenase 3741 46.25 +1 4493817..4495814 - 665 114564928 - Sfri_3776 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 3742 43.87 0 4495826..4498492 - 888 114564929 aceE Sfri_3777 - pyruvate dehydrogenase subunit E1 3743 45.68 +1 4498584..4499336 - 250 114564930 pdhR Sfri_3778 - transcriptional regulator PdhR 3744 40.85 0 4499635..4500486 - 283 114564931 - Sfri_3779 - regulatory protein AmpE 3745 44.68 0 4500612..4501166 - 184 114564932 - Sfri_3780 - N-acetyl-anhydromuranmyl-L-alanine amidase 3746 44.48 0 4501586..4502464 + 292 114564933 - Sfri_3781 - nicotinate-nucleotide pyrophosphorylase 3747 40.94 0 4503464..4503910 + 148 114564934 - Sfri_3782 - methylation site containing protein 3748 42.77 0 4504003..4505709 + 568 114564935 - Sfri_3783 - type IV-A pilus assembly ATPase PilB 3749 41.51 0 4505817..4507076 + 419 114564936 - Sfri_3784 - type II secretion system protein 3750 41.96 0 4507106..4508032 + 308 114564937 - Sfri_3785 - prepilin peptidase 3751 42.06 0 4508029..4508658 + 209 114564938 - Sfri_3786 - dephospho-CoA kinase 3752 38.64 -1 4508651..4509385 + 244 114564939 - Sfri_3787 - hypothetical protein 3753 40.18 0 4509422..4509640 + 72 114564940 - Sfri_3788 - hypothetical protein 3754 39.14 0 4509664..4510059 + 131 114564941 - Sfri_3789 - mutator MutT protein 3755 45.69 +1 4510983..4511516 - 177 114564942 - Sfri_3792 - ISSod10, transposase OrfB 3756 40.00 0 4511530..4512009 - 159 114564943 - Sfri_3793 - ISSod10, transposase OrfA 3757 46.18 +1 4518767..4519303 - 178 114564944 - Sfri_3794 - ISSod10, transposase OrfB 3758 40.42 0 4519317..4519796 - 159 114564945 - Sfri_3795 - ISSod10, transposase OrfA 3759 41.20 0 4526231..4528951 - 906 114564946 - Sfri_3796 - preprotein translocase subunit SecA 3760 43.11 0 4529010..4529909 - 299 114564947 - Sfri_3797 - peptidase M23B 3761 43.05 0 4529937..4530389 + 150 114564948 - Sfri_3798 - hypothetical protein 3762 42.89 0 4530394..4531314 - 306 114564949 lpxC Sfri_3799 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3763 46.36 +1 4531525..4532691 - 388 114564950 - Sfri_3800 - cell division protein FtsZ 3764 44.82 0 4532718..4533953 - 411 114564951 - Sfri_3801 - cell division protein FtsA 3765 40.73 0 4533950..4534720 - 256 114564952 - Sfri_3802 - polypeptide-transport-associated domain-containing protein 3766 44.51 0 4534842..4536299 - 485 114564953 - Sfri_3803 - UDP-N-acetylmuramate--alanine ligase 3767 43.84 0 4536301..4537404 - 367 114564954 - Sfri_3804 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 3768 44.94 0 4537404..4538618 - 404 114564955 - Sfri_3805 - cell division protein FtsW 3769 44.14 0 4538608..4539930 - 440 114564956 - Sfri_3806 - UDP-N-acetylmuramoylalanine--D-glutamate ligase 3770 43.67 0 4539953..4541035 - 360 114564957 - Sfri_3807 - phospho-N-acetylmuramoyl-pentapeptide-transferase 3771 44.78 0 4541036..4542424 - 462 114564958 - Sfri_3808 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase 3772 43.33 0 4542421..4543911 - 496 114564959 - Sfri_3809 - UDP-N-acetylmuramyl-tripeptide synthetases 3773 44.43 0 4543898..4545646 - 582 114564960 - Sfri_3810 - peptidoglycan glycosyltransferase 3774 42.86 0 4545658..4545972 - 104 114564961 - Sfri_3811 - cell division protein FtsL 3775 43.31 0 4545987..4546928 - 313 114564962 mraW Sfri_3812 - S-adenosyl-methyltransferase MraW 3776 44.23 0 4546954..4547412 - 152 114564963 - Sfri_3813 - cell division protein MraZ 3777 46.11 +1 4548550..4548870 + 106 114564964 - Sfri_3814 - hypothetical protein 3778 45.89 +1 4548883..4550379 - 498 114564965 - Sfri_3815 - glycerol kinase 3779 44.86 0 4550575..4551927 - 450 114564966 - Sfri_3816 - membrane protein involved in aromatic hydrocarbon degradation 3780 42.24 0 4552406..4553011 - 201 114564967 - Sfri_3817 - isopropylmalate isomerase small subunit 3781 46.50 +1 4553031..4554443 - 470 114564968 - Sfri_3818 - isopropylmalate isomerase large subunit 3782 45.11 0 4554443..4555537 - 364 114564969 - Sfri_3819 - 3-isopropylmalate dehydrogenase 3783 43.21 0 4555534..4557102 - 522 114564970 - Sfri_3820 - 2-isopropylmalate synthase 3784 38.27 -1 4557707..4559470 + 587 114564971 - Sfri_3821 - hypothetical protein 3785 44.16 0 4559475..4561322 - 615 114564972 - Sfri_3822 - ATP-dependent DNA helicase RecQ 3786 43.44 0 4561524..4561988 + 154 114564973 - Sfri_3823 - hypothetical protein 3787 42.24 0 4562113..4563021 + 302 114564974 - Sfri_3824 - transporter DMT superfamily protein 3788 43.94 0 4563137..4564456 - 439 114564975 - Sfri_3825 - N-acetylglutamate synthase 3789 34.48 -2 4564933..4565106 - 57 114564976 rpmG Sfri_3826 - 50S ribosomal protein L33 3790 40.93 0 4565113..4565349 - 78 114564977 - Sfri_3827 - ribosomal protein L28 3791 43.22 0 4565471..4566148 - 225 114564978 - Sfri_3828 - DNA repair protein RadC 3792 46.30 +1 4566645..4567847 + 400 114564979 - Sfri_3829 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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