version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3644 46.37 +1 4363740..4365143 - 467 114564831 - Sfri_3679 - RND efflux system, outer membrane lipoprotein, NodT family protein 3645 39.60 0 4365418..4366326 - 302 114564832 - Sfri_3680 - haloalkane dehalogenase 3646 31.10 -2 4366530..4366976 - 148 114564833 - Sfri_3681 - hypothetical protein 3647 35.61 -2 4366991..4367650 - 219 114564834 - Sfri_3682 - cytoplasmic chaperone TorD family protein 3648 40.87 0 4367708..4368370 - 220 114564835 - Sfri_3683 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3649 41.08 0 4368385..4370901 - 838 114564836 - Sfri_3684 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 3650 40.00 0 4370935..4372944 - 669 114564837 - Sfri_3685 - outer membrane protein 3651 42.86 0 4372959..4373903 - 314 114564838 - Sfri_3686 - cytochrome C family protein 3652 29.94 -2 4374348..4375142 + 264 114564839 - Sfri_3687 - hypothetical protein 3653 43.15 0 4375464..4376849 - 461 114564840 - Sfri_3688 - two component, sigma54 specific, transcriptional regulator, Fis family protein 3654 42.23 0 4376853..4378820 - 655 114564841 - Sfri_3689 - periplasmic sensor signal transduction histidine kinase 3655 44.92 0 4379265..4381016 + 583 114564842 - Sfri_3690 - flavocytochrome c 3656 43.87 0 4381420..4381827 + 135 114564843 - Sfri_3691 - glyoxalase/bleomycin resistance protein/dioxygenase 3657 43.70 0 4382030..4383283 - 417 114564844 - Sfri_3692 - outer membrane porin 3658 43.70 0 4383349..4383705 - 118 114564845 - Sfri_3693 - hypothetical protein 3659 44.35 0 4383773..4385452 - 559 114564846 - Sfri_3694 - twin-arginine translocation pathway signal 3660 41.05 0 4385928..4386653 + 241 114564847 - Sfri_3695 - regulatory protein GntR, HTH 3661 46.16 +1 4387002..4388732 + 576 114564848 - Sfri_3696 - feruloyl esterase 3662 45.32 +1 4388929..4389687 - 252 114564849 - Sfri_3697 - hypothetical protein 3663 45.73 +1 4389816..4391396 - 526 114564850 - Sfri_3698 - anaerobic nitric oxide reductase transcription regulator 3664 42.81 0 4391583..4392764 + 393 114564851 - Sfri_3699 - globin 3665 40.59 0 4392898..4394055 - 385 114564852 - Sfri_3700 - serine phosphatase 3666 35.94 -1 4394065..4394640 - 191 114564853 - Sfri_3701 - toluene tolerance family protein 3667 37.11 -1 4394640..4395089 - 149 114564854 - Sfri_3702 - hypothetical protein 3668 42.01 0 4395102..4395896 - 264 114564855 - Sfri_3703 - hypothetical protein 3669 42.61 0 4395896..4396693 - 265 114564856 - Sfri_3704 - ABC transporter related 3670 38.18 -1 4396686..4397015 - 109 114564857 - Sfri_3705 - anti-sigma-factor antagonist 3671 38.81 -1 4397022..4397423 - 133 114564858 - Sfri_3706 - putative anti-sigma regulatory factor, serine/threonine protein kinase 3672 41.89 0 4397427..4398092 - 221 114564859 - Sfri_3707 - VacJ family lipoprotein 3673 35.16 -2 4398499..4398717 - 72 114564860 - Sfri_3708 - hypothetical protein 3674 43.37 0 4399048..4399794 + 248 114564861 - Sfri_3709 - putative hydrolase 3675 48.70 +2 4399965..4400693 - 242 114564862 - Sfri_3710 - single-strand binding protein 3676 44.44 0 4400759..4402126 - 455 114564863 - Sfri_3711 - major facilitator transporter 3677 45.04 0 4402371..4405232 + 953 114564864 - Sfri_3712 - excinuclease ABC, A subunit 3678 44.65 0 4405283..4406254 + 323 114564865 - Sfri_3713 - peptidase M28 3679 46.67 +1 4406509..4408413 + 634 114564866 - Sfri_3714 - DEAD/DEAH box helicase domain-containing protein 3680 44.07 0 4408850..4409818 - 322 114564867 - Sfri_3715 - hypothetical protein 3681 43.03 0 4410026..4411129 + 367 114564868 - Sfri_3716 - phosphoribosylaminoimidazole-succinocarboxamide synthase 3682 43.33 0 4411467..4413647 + 726 114564869 - Sfri_3717 - TonB-dependent siderophore receptor 3683 43.05 0 4413770..4416382 - 870 114564870 - Sfri_3718 - endonuclease/exonuclease/phosphatase 3684 39.51 0 4416962..4418401 + 479 114564871 - Sfri_3719 - methyl-accepting chemotaxis sensory transducer 3685 40.42 0 4418534..4419901 - 455 114564872 - Sfri_3720 - hypothetical protein 3686 44.49 0 4420099..4421478 - 459 114564873 - Sfri_3721 - peptidase U62, modulator of DNA gyrase 3687 37.64 -1 4421638..4422171 + 177 114564874 - Sfri_3722 - hypothetical protein 3688 44.26 0 4422219..4424699 + 826 114564875 - Sfri_3723 - Ig domain-containing protein 3689 41.54 0 4425008..4425409 + 133 114564876 - Sfri_3724 - hypothetical protein 3690 42.54 0 4425746..4426636 + 296 114564877 - Sfri_3725 - transcriptional regulator, LysR family protein 3691 42.30 0 4427032..4427544 + 170 114564878 - Sfri_3726 - hypothetical protein 3692 42.58 0 4427727..4428872 - 381 114564879 - Sfri_3727 - hypothetical protein 3693 44.67 0 4428869..4430041 - 390 114564880 - Sfri_3728 - hypothetical protein 3694 46.16 +1 4430054..4431043 - 329 114564881 - Sfri_3729 - secretion protein HlyD family protein 3695 44.35 0 4431033..4432466 - 477 114564882 - Sfri_3730 - outer membrane efflux protein 3696 46.03 +1 4432650..4434098 - 482 114564883 - Sfri_3731 - peptidase U62, modulator of DNA gyrase 3697 46.45 +1 4434194..4435024 - 276 114564884 - Sfri_3732 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3698 42.57 0 4434948..4439279 - 1443 114564885 - Sfri_3733 - hypothetical protein 3699 43.59 0 4439279..4440769 - 496 114564886 - Sfri_3734 - ribonuclease G 3700 44.90 0 4440851..4441438 - 195 114564887 - Sfri_3735 - maf protein 3701 43.29 0 4441496..4441987 - 163 114564888 - Sfri_3736 - rod shape-determining protein MreD 3702 45.28 +1 4441984..4442946 - 320 114564889 - Sfri_3737 - rod shape-determining protein MreC 3703 46.67 +1 4443010..4444059 - 349 114564890 - Sfri_3738 - cell shape determining protein, MreB/Mrl family protein 3704 41.07 0 4444252..4448850 - 1532 114564891 - Sfri_3739 - hypothetical protein 3705 45.61 +1 4448840..4449295 - 151 114564892 - Sfri_3740 - MSHA biogenesis protein MshP 3706 42.03 0 4449285..4450112 - 275 114564893 - Sfri_3741 - methylation site containing protein 3707 43.20 0 4450112..4450648 - 178 114564894 - Sfri_3742 - methylation site containing protein 3708 42.50 0 4450638..4451117 - 159 114564895 - Sfri_3743 - methylation site containing protein 3709 42.15 0 4451358..4451879 - 173 114564896 - Sfri_3744 - methylation site containing protein 3710 42.08 0 4451945..4452550 - 201 114564897 - Sfri_3745 - methylation site containing protein 3711 39.90 0 4452660..4453238 - 192 114564898 - Sfri_3746 - hypothetical protein 3712 41.73 0 4453283..4454497 - 404 114564899 - Sfri_3747 - type II secretion system protein 3713 44.12 0 4454500..4456260 - 586 114564900 - Sfri_3748 - type II secretion system protein E 3714 44.21 0 4456257..4457534 - 425 114564901 - Sfri_3749 - TPR repeat-containing protein 3715 40.11 0 4457549..4458493 - 314 114564902 - Sfri_3750 - MSHA biogenesis protein MshM 3716 42.91 0 4458563..4460233 - 556 114564903 - Sfri_3751 - pilus (MSHA type) biogenesis protein MshL 3717 40.67 0 4460247..4460573 - 108 114564904 - Sfri_3752 - MSHA biogenesis protein MshK 3718 40.49 0 4460554..4461210 - 218 114564905 - Sfri_3753 - MSHA biogenesis protein MshJ 3719 41.35 0 4461207..4461755 - 182 114564906 - Sfri_3754 - hypothetical protein 3720 40.40 0 4461824..4462729 - 301 114564907 - Sfri_3755 - biogenesis protein MshI 3721 39.61 0 4462992..4464902 - 636 114564908 - Sfri_3756 - regulatory protein CsrD 3722 42.55 0 4465106..4466353 - 415 114564909 - Sfri_3757 - malate dehydrogenase 3723 39.91 0 4466787..4466999 - 70 114564910 rpmE Sfri_3758 - 50S ribosomal protein L31 3724 39.72 0 4467142..4468377 - 411 114564911 - Sfri_3759 - hypothetical protein 3725 40.26 0 4468667..4469503 - 278 114564912 - Sfri_3760 - hypothetical protein 3726 46.13 +1 4469588..4471783 + 731 114564913 - Sfri_3761 - primosomal protein N' 3727 44.04 0 4471963..4473708 + 581 114564914 argS Sfri_3762 - arginyl-tRNA synthetase 3728 45.50 +1 4473711..4474310 + 199 114564915 - Sfri_3763 - sporulation domain-containing protein 3729 43.24 0 4474481..4475005 + 174 114564916 - Sfri_3764 - ATP-dependent protease peptidase subunit 3730 43.29 0 4475031..4476356 + 441 114564917 hslU Sfri_3765 - ATP-dependent protease ATP-binding subunit 3731 41.86 0 4476532..4476918 + 128 114564918 - Sfri_3766 - hypothetical protein 3732 39.87 0 4476962..4477267 + 101 114564919 - Sfri_3767 - hypothetical protein 3733 47.92 +1 4477529..4477816 - 95 114564920 - Sfri_3768 - hypothetical protein 3734 32.31 -2 4478111..4478890 + 259 114564921 - Sfri_3769 - hypothetical protein 3735 42.62 0 4479098..4480141 + 347 114564922 - Sfri_3770 - transposase IS116/IS110/IS902 family protein 3736 43.61 0 4480959..4483556 - 865 114564923 - Sfri_3771 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 3737 45.05 0 4483962..4484618 + 218 114564924 - Sfri_3772 - 2-deoxyglucose-6-phosphatase 3738 42.91 0 4484950..4487214 - 754 114564925 - Sfri_3773 - patatin 3739 40.93 0 4487323..4491786 - 1487 114564926 - Sfri_3774 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 3740 42.28 0 4492187..4493617 - 476 114564927 - Sfri_3775 - dihydrolipoamide dehydrogenase 3741 46.25 +1 4493817..4495814 - 665 114564928 - Sfri_3776 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 3742 43.87 0 4495826..4498492 - 888 114564929 aceE Sfri_3777 - pyruvate dehydrogenase subunit E1 3743 45.68 +1 4498584..4499336 - 250 114564930 pdhR Sfri_3778 - transcriptional regulator PdhR 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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