IslandPathversion 1.0

IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.09 STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3622	 41.57	0	4335461..4336516	+	351	114564809	-	Sfri_3657	-	NERD domain-containing protein
3623	 37.45	-1	4336551..4337279	+	242	114564810	-	Sfri_3658	-	hypothetical protein
3624	 33.63	-2	4337530..4339533	-	667	114564811	-	Sfri_3659	-	ATPase, putative
3625	 44.44	0	4339965..4341602	-	545	114564812	groEL	Sfri_3660	-	chaperonin GroEL
3626	 44.33	0	4341660..4341950	-	96	114564813	groES	Sfri_3661	-	co-chaperonin GroES
3627	 45.07	0	4342165..4343595	+	476	114564814	-	Sfri_3662	-	MATE efflux family protein
3628	 46.03	+1	4343686..4344063	+	125	114564815	-	Sfri_3663	-	hypothetical protein
3629	 41.82	0	4344259..4344906	-	215	114564816	-	Sfri_3664	-	FxsA cytoplasmic membrane protein
3630	 42.51	0	4345135..4345461	+	108	114564817	-	Sfri_3665	-	CutA1 divalent ion tolerance protein
3631	 42.18	0	4345434..4347320	+	628	114564818	dipZ	Sfri_3666	-	thiol:disulfide interchange protein precursor
3632	 43.09	0	4347773..4349443	+	556	114564819	-	Sfri_3667	-	sodium/hydrogen exchanger
3633	 44.71	0	4349616..4350758	+	380	114564820	-	Sfri_3668	-	galactokinase
3634	 45.51	+1	4350784..4351818	+	344	114564821	-	Sfri_3669	-	aldose 1-epimerase
3635	 41.79	0	4351808..4352221	+	137	114564822	-	Sfri_3670	-	hypothetical protein
3636	 41.55	0	4352340..4352777	-	145	114564823	-	Sfri_3671	-	hypothetical protein
3637	 47.93	+1	4353154..4354167	-	337	114564824	-	Sfri_3672	-	alcohol dehydrogenase
3638	 41.67	0	4354363..4355154	+	263	114564825	-	Sfri_3673	-	putative cation efflux protein
3639	 47.22	+1	4355323..4357050	-	575	114564826	-	Sfri_3674	-	putative sulfate transporter YchM
3640	 42.24	0	4357338..4358594	-	418	114564827	-	Sfri_3675	-	periplasmic sensor signal transduction histidine kinase
3641	 45.17	0	4358653..4359345	-	230	114564828	-	Sfri_3676	-	two component transcriptional regulator, winged helix family protein
3642	 44.88	0	4359366..4362527	-	1053	114564829	-	Sfri_3677	-	acriflavin resistance protein
3643	 46.27	+1	4362530..4363750	-	406	114564830	-	Sfri_3678	-	RND family efflux transporter MFP subunit
3644	 46.37	+1	4363740..4365143	-	467	114564831	-	Sfri_3679	-	RND efflux system, outer membrane lipoprotein, NodT family protein
3645	 39.60	0	4365418..4366326	-	302	114564832	-	Sfri_3680	-	haloalkane dehalogenase
3646	 31.10	-2	4366530..4366976	-	148	114564833	-	Sfri_3681	-	hypothetical protein
3647	 35.61	-2	4366991..4367650	-	219	114564834	-	Sfri_3682	-	cytoplasmic chaperone TorD family protein
3648	 40.87	0	4367708..4368370	-	220	114564835	-	Sfri_3683	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3649	 41.08	0	4368385..4370901	-	838	114564836	-	Sfri_3684	-	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein
3650	 40.00	0	4370935..4372944	-	669	114564837	-	Sfri_3685	-	outer membrane protein
3651	 42.86	0	4372959..4373903	-	314	114564838	-	Sfri_3686	-	cytochrome C family protein
3652	 29.94	-2	4374348..4375142	+	264	114564839	-	Sfri_3687	-	hypothetical protein
3653	 43.15	0	4375464..4376849	-	461	114564840	-	Sfri_3688	-	two component, sigma54 specific, transcriptional regulator, Fis family protein
3654	 42.23	0	4376853..4378820	-	655	114564841	-	Sfri_3689	-	periplasmic sensor signal transduction histidine kinase
3655	 44.92	0	4379265..4381016	+	583	114564842	-	Sfri_3690	-	flavocytochrome c
3656	 43.87	0	4381420..4381827	+	135	114564843	-	Sfri_3691	-	glyoxalase/bleomycin resistance protein/dioxygenase
3657	 43.70	0	4382030..4383283	-	417	114564844	-	Sfri_3692	-	outer membrane porin
3658	 43.70	0	4383349..4383705	-	118	114564845	-	Sfri_3693	-	hypothetical protein
3659	 44.35	0	4383773..4385452	-	559	114564846	-	Sfri_3694	-	twin-arginine translocation pathway signal
3660	 41.05	0	4385928..4386653	+	241	114564847	-	Sfri_3695	-	regulatory protein GntR, HTH
3661	 46.16	+1	4387002..4388732	+	576	114564848	-	Sfri_3696	-	feruloyl esterase
3662	 45.32	+1	4388929..4389687	-	252	114564849	-	Sfri_3697	-	hypothetical protein
3663	 45.73	+1	4389816..4391396	-	526	114564850	-	Sfri_3698	-	anaerobic nitric oxide reductase transcription regulator
3664	 42.81	0	4391583..4392764	+	393	114564851	-	Sfri_3699	-	globin
3665	 40.59	0	4392898..4394055	-	385	114564852	-	Sfri_3700	-	serine phosphatase
3666	 35.94	-1	4394065..4394640	-	191	114564853	-	Sfri_3701	-	toluene tolerance family protein
3667	 37.11	-1	4394640..4395089	-	149	114564854	-	Sfri_3702	-	hypothetical protein
3668	 42.01	0	4395102..4395896	-	264	114564855	-	Sfri_3703	-	hypothetical protein
3669	 42.61	0	4395896..4396693	-	265	114564856	-	Sfri_3704	-	ABC transporter related
3670	 38.18	-1	4396686..4397015	-	109	114564857	-	Sfri_3705	-	anti-sigma-factor antagonist
3671	 38.81	-1	4397022..4397423	-	133	114564858	-	Sfri_3706	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
3672	 41.89	0	4397427..4398092	-	221	114564859	-	Sfri_3707	-	VacJ family lipoprotein
3673	 35.16	-2	4398499..4398717	-	72	114564860	-	Sfri_3708	-	hypothetical protein
3674	 43.37	0	4399048..4399794	+	248	114564861	-	Sfri_3709	-	putative hydrolase
3675	 48.70	+2	4399965..4400693	-	242	114564862	-	Sfri_3710	-	single-strand binding protein
3676	 44.44	0	4400759..4402126	-	455	114564863	-	Sfri_3711	-	major facilitator transporter
3677	 45.04	0	4402371..4405232	+	953	114564864	-	Sfri_3712	-	excinuclease ABC, A subunit
3678	 44.65	0	4405283..4406254	+	323	114564865	-	Sfri_3713	-	peptidase M28
3679	 46.67	+1	4406509..4408413	+	634	114564866	-	Sfri_3714	-	DEAD/DEAH box helicase domain-containing protein
3680	 44.07	0	4408850..4409818	-	322	114564867	-	Sfri_3715	-	hypothetical protein
3681	 43.03	0	4410026..4411129	+	367	114564868	-	Sfri_3716	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3682	 43.33	0	4411467..4413647	+	726	114564869	-	Sfri_3717	-	TonB-dependent siderophore receptor
3683	 43.05	0	4413770..4416382	-	870	114564870	-	Sfri_3718	-	endonuclease/exonuclease/phosphatase
3684	 39.51	0	4416962..4418401	+	479	114564871	-	Sfri_3719	-	methyl-accepting chemotaxis sensory transducer
3685	 40.42	0	4418534..4419901	-	455	114564872	-	Sfri_3720	-	hypothetical protein
3686	 44.49	0	4420099..4421478	-	459	114564873	-	Sfri_3721	-	peptidase U62, modulator of DNA gyrase
3687	 37.64	-1	4421638..4422171	+	177	114564874	-	Sfri_3722	-	hypothetical protein
3688	 44.26	0	4422219..4424699	+	826	114564875	-	Sfri_3723	-	Ig domain-containing protein
3689	 41.54	0	4425008..4425409	+	133	114564876	-	Sfri_3724	-	hypothetical protein
3690	 42.54	0	4425746..4426636	+	296	114564877	-	Sfri_3725	-	transcriptional regulator, LysR family protein
3691	 42.30	0	4427032..4427544	+	170	114564878	-	Sfri_3726	-	hypothetical protein
3692	 42.58	0	4427727..4428872	-	381	114564879	-	Sfri_3727	-	hypothetical protein
3693	 44.67	0	4428869..4430041	-	390	114564880	-	Sfri_3728	-	hypothetical protein
3694	 46.16	+1	4430054..4431043	-	329	114564881	-	Sfri_3729	-	secretion protein HlyD family protein
3695	 44.35	0	4431033..4432466	-	477	114564882	-	Sfri_3730	-	outer membrane efflux protein
3696	 46.03	+1	4432650..4434098	-	482	114564883	-	Sfri_3731	-	peptidase U62, modulator of DNA gyrase
3697	 46.45	+1	4434194..4435024	-	276	114564884	-	Sfri_3732	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3698	 42.57	0	4434948..4439279	-	1443	114564885	-	Sfri_3733	-	hypothetical protein
3699	 43.59	0	4439279..4440769	-	496	114564886	-	Sfri_3734	-	ribonuclease G
3700	 44.90	0	4440851..4441438	-	195	114564887	-	Sfri_3735	-	maf protein
3701	 43.29	0	4441496..4441987	-	163	114564888	-	Sfri_3736	-	rod shape-determining protein MreD
3702	 45.28	+1	4441984..4442946	-	320	114564889	-	Sfri_3737	-	rod shape-determining protein MreC
3703	 46.67	+1	4443010..4444059	-	349	114564890	-	Sfri_3738	-	cell shape determining protein, MreB/Mrl family protein
3704	 41.07	0	4444252..4448850	-	1532	114564891	-	Sfri_3739	-	hypothetical protein
3705	 45.61	+1	4448840..4449295	-	151	114564892	-	Sfri_3740	-	MSHA biogenesis protein MshP
3706	 42.03	0	4449285..4450112	-	275	114564893	-	Sfri_3741	-	methylation site containing protein
3707	 43.20	0	4450112..4450648	-	178	114564894	-	Sfri_3742	-	methylation site containing protein
3708	 42.50	0	4450638..4451117	-	159	114564895	-	Sfri_3743	-	methylation site containing protein
3709	 42.15	0	4451358..4451879	-	173	114564896	-	Sfri_3744	-	methylation site containing protein
3710	 42.08	0	4451945..4452550	-	201	114564897	-	Sfri_3745	-	methylation site containing protein
3711	 39.90	0	4452660..4453238	-	192	114564898	-	Sfri_3746	-	hypothetical protein
3712	 41.73	0	4453283..4454497	-	404	114564899	-	Sfri_3747	-	type II secretion system protein
3713	 44.12	0	4454500..4456260	-	586	114564900	-	Sfri_3748	-	type II secretion system protein E
3714	 44.21	0	4456257..4457534	-	425	114564901	-	Sfri_3749	-	TPR repeat-containing protein
3715	 40.11	0	4457549..4458493	-	314	114564902	-	Sfri_3750	-	MSHA biogenesis protein MshM
3716	 42.91	0	4458563..4460233	-	556	114564903	-	Sfri_3751	-	pilus (MSHA type) biogenesis protein MshL
3717	 40.67	0	4460247..4460573	-	108	114564904	-	Sfri_3752	-	MSHA biogenesis protein MshK
3718	 40.49	0	4460554..4461210	-	218	114564905	-	Sfri_3753	-	MSHA biogenesis protein MshJ
3719	 41.35	0	4461207..4461755	-	182	114564906	-	Sfri_3754	-	hypothetical protein
3720	 40.40	0	4461824..4462729	-	301	114564907	-	Sfri_3755	-	biogenesis protein MshI
3721	 39.61	0	4462992..4464902	-	636	114564908	-	Sfri_3756	-	regulatory protein CsrD
42.09	MEAN

3.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.