version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3477 42.07 0 4184547..4185542 + 331 114564664 - Sfri_3511 - CheC, inhibitor of MCP methylation 3478 40.75 0 4185558..4186514 + 318 114564665 - Sfri_3512 - diguanylate cyclase 3479 40.51 0 4186598..4187029 - 143 114564666 - Sfri_3513 - hypothetical protein 3480 39.46 0 4187125..4187859 - 244 114564667 - Sfri_3514 - 1-acyl-sn-glycerol-3-phosphate acyltransferases 3481 43.38 0 4188007..4188792 - 261 114564668 - Sfri_3515 - ABC-3 protein 3482 44.98 0 4188797..4189663 - 288 114564669 - Sfri_3516 - periplasmic solute binding protein 3483 42.21 0 4189686..4190879 - 397 114564670 - Sfri_3517 - hypothetical protein 3484 41.58 0 4190967..4191257 - 96 114564671 - Sfri_3518 - hypothetical protein 3485 34.13 -2 4191484..4191609 + 41 114564672 - Sfri_3519 - hypothetical protein 3486 40.30 0 4191615..4191944 - 109 114564673 - Sfri_3520 - hypothetical protein 3487 41.30 0 4192069..4193712 + 547 114564674 - Sfri_3521 - MscS mechanosensitive ion channel 3488 43.71 0 4193794..4194660 - 288 114564675 - Sfri_3522 - dehydratase 3489 41.76 0 4194931..4195701 + 256 114564676 - Sfri_3523 - methyltransferase type 12 3490 43.56 0 4195769..4196677 - 302 114564677 - Sfri_3524 - GumN family protein 3491 38.83 -1 4196730..4197038 + 102 114564678 - Sfri_3525 - hypothetical protein 3492 40.78 0 4197456..4199201 + 581 114564679 - Sfri_3527 - diguanylate cyclase/phosphodiesterase 3493 37.90 -1 4199196..4199720 - 174 114564680 - Sfri_3528 - hypothetical protein 3494 42.35 0 4199957..4200466 - 169 114564681 - Sfri_3529 - hypothetical protein 3495 40.93 0 4200524..4200931 + 135 114564682 - Sfri_3530 - hypothetical protein 3496 41.85 0 4201054..4201851 + 265 114564683 - Sfri_3531 - response regulator receiver protein 3497 39.19 0 4202007..4202279 + 90 114564684 - Sfri_3532 - histone family protein DNA-binding protein 3498 42.65 0 4202674..4203360 + 228 114564685 - Sfri_3533 - hypothetical protein 3499 41.24 0 4203680..4203856 + 58 114564686 - Sfri_3534 - hypothetical protein 3500 40.80 0 4203941..4204918 - 325 114564687 - Sfri_3535 - hypothetical protein 3501 42.94 0 4205154..4206506 + 450 114564688 - Sfri_3536 - hypothetical protein 3502 47.33 +1 4206645..4207616 + 323 114564689 - Sfri_3537 - hypothetical protein 3503 43.52 0 4207613..4208584 + 323 114564690 - Sfri_3538 - ABC transporter related 3504 44.14 0 4208596..4209705 + 369 114564691 - Sfri_3539 - ABC-2 type transporter 3505 43.86 0 4209750..4210148 - 132 114564692 - Sfri_3540 - hypothetical protein 3506 45.63 +1 4210259..4211632 - 457 114564693 - Sfri_3541 - amino acid carrier protein 3507 39.33 0 4211837..4212370 - 177 114564694 - Sfri_3542 - hypothetical protein 3508 40.98 0 4212598..4212963 - 121 114564695 - Sfri_3543 - cupin 2 domain-containing protein 3509 41.94 0 4213006..4213284 - 92 114564696 - Sfri_3544 - hypothetical protein 3510 45.31 +1 4213464..4214582 - 372 114564697 - Sfri_3545 - cytochrome c family protein 3511 47.87 +1 4214593..4215225 - 210 114564698 - Sfri_3546 - cytochrome c family protein 3512 43.39 0 4215382..4216266 - 294 114564699 metF Sfri_3547 - 5,10-methylenetetrahydrofolate reductase 3513 44.72 0 4216788..4217279 + 163 114564700 - Sfri_3548 - hypothetical protein 3514 34.14 -2 4217431..4217679 - 82 114564701 - Sfri_3549 - hypothetical protein 3515 44.49 0 4217805..4220198 - 797 114564702 metL Sfri_3550 - bifunctional aspartate kinase II/homoserine dehydrogenase II 3516 45.98 +1 4220330..4221499 - 389 114564703 - Sfri_3551 - O-succinylhomoserine (thiol)-lyase 3517 41.27 0 4221709..4222023 + 104 114564704 - Sfri_3552 - transcriptional repressor protein MetJ 3518 42.78 0 4222098..4222838 + 246 114564705 - Sfri_3553 - hypothetical protein 3519 44.24 0 4223195..4223524 + 109 114564706 - Sfri_3554 - cytochrome c family protein 3520 43.72 0 4223673..4225385 + 570 114564707 - Sfri_3555 - hypothetical protein 3521 43.73 0 4225448..4226842 + 464 114564708 - Sfri_3556 - cytochrome c, putative 3522 42.61 0 4226937..4227917 - 326 114564709 - Sfri_3557 - pseudouridine synthase 3523 40.07 0 4228029..4228607 - 192 114564710 - Sfri_3558 - peptidase S16, lon domain-containing protein 3524 42.90 0 4228821..4229876 - 351 114564711 - Sfri_3559 - alpha/beta fold family hydrolase 3525 41.77 0 4229982..4230443 + 153 114564712 - Sfri_3560 - hypothetical protein 3526 41.67 0 4230824..4231747 + 307 114564713 - Sfri_3561 - putative manganese-dependent inorganic pyrophosphatase 3527 40.88 0 4231797..4232525 - 242 114564714 - Sfri_3562 - integrase catalytic subunit 3528 38.64 -1 4232630..4233025 - 131 114564715 - Sfri_3563 - transposase 3529 46.42 +1 4233139..4233543 - 134 114564716 - Sfri_3564 - hypothetical protein 3530 45.27 +1 4233543..4235594 - 683 114564717 - Sfri_3565 - TRAP transporter, 4TM/12TM fusion protein 3531 43.61 0 4235780..4236733 - 317 114564718 - Sfri_3566 - TRAP transporter solute receptor, TAXI family protein 3532 45.25 +1 4237065..4238339 - 424 114564719 - Sfri_3567 - glycerophosphoryl diester phosphodiesterase 3533 44.08 0 4238576..4239217 + 213 114564720 - Sfri_3568 - hypothetical protein 3534 46.84 +1 4239396..4240076 + 226 114564721 - Sfri_3569 - monofunctional biosynthetic peptidoglycan transglycosylase 3535 47.09 +1 4240308..4242284 + 658 114564722 - Sfri_3570 - radical SAM domain-containing protein 3536 46.44 +1 4242503..4242937 + 144 114564723 - Sfri_3571 - CMP/dCMP deaminase, zinc-binding 3537 35.28 -2 4243124..4243534 - 136 114564724 - Sfri_3572 - hypothetical protein 3538 31.87 -2 4243726..4244271 - 181 114564725 - Sfri_3573 - hypothetical protein 3539 35.46 -2 4244714..4244995 - 93 114564726 - Sfri_3574 - hypothetical protein 3540 32.18 -2 4245077..4245424 - 115 114564727 - Sfri_3575 - hypothetical protein 3541 43.64 0 4246303..4246884 + 193 114564728 - Sfri_3576 - hypothetical protein 3542 38.56 -1 4247424..4248398 + 324 114564729 - Sfri_3577 - hypothetical protein 3543 40.82 0 4248443..4249510 + 355 114564730 - Sfri_3578 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3544 44.95 0 4249559..4250539 - 326 114564731 - Sfri_3579 - putative integral membrane protein 3545 44.13 0 4250827..4253511 - 894 114564732 - Sfri_3580 - TonB-dependent receptor, plug 3546 44.66 0 4253596..4256430 - 944 114564733 - Sfri_3581 - putative lipoprotein 3547 37.33 -1 4256648..4257022 - 124 114564734 - Sfri_3582 - hypothetical protein 3548 42.93 0 4257326..4258534 + 402 114564735 - Sfri_3583 - sodium/hydrogen exchanger 3549 41.38 0 4258596..4259813 - 405 114564736 - Sfri_3584 - TonB family protein 3550 42.93 0 4259813..4260187 - 124 114564737 - Sfri_3585 - transcriptional repressor, CopY family protein 3551 47.38 +1 4260376..4263564 - 1062 114564738 - Sfri_3586 - heavy metal efflux pump, CzcA family protein 3552 48.23 +1 4263581..4264540 - 319 114564739 - Sfri_3587 - RND family efflux transporter MFP subunit 3553 44.76 0 4264528..4264947 - 139 114564740 - Sfri_3588 - hypothetical protein 3554 41.61 0 4265053..4265463 - 136 114564741 - Sfri_3589 - hypothetical protein 3555 40.11 0 4265508..4265684 - 58 114564742 - Sfri_3590 - hypothetical protein 3556 45.36 +1 4265855..4266220 - 121 114564743 - Sfri_3591 - hypothetical protein 3557 41.49 0 4266550..4266966 + 138 114564744 - Sfri_3592 - hypothetical protein 3558 43.62 0 4267191..4267637 + 148 114564745 - Sfri_3593 - 3-dehydroquinate dehydratase 3559 41.98 0 4267663..4268055 + 130 114564746 - Sfri_3594 - hypothetical protein 3560 44.25 0 4268147..4269154 + 335 114564747 - Sfri_3595 - hypothetical protein 3561 45.80 +1 4269258..4271021 - 587 114564748 - Sfri_3596 - twin-arginine translocation pathway signal 3562 42.55 0 4271344..4271766 + 140 114564749 - Sfri_3597 - OsmC family protein 3563 46.49 +1 4271900..4272910 - 336 114564750 - Sfri_3598 - luciferase family protein 3564 37.71 -1 4273000..4273524 - 174 114564751 - Sfri_3599 - hypothetical protein 3565 43.62 0 4273718..4274485 - 255 114564752 - Sfri_3600 - short-chain dehydrogenase/reductase SDR 3566 36.31 -1 4274591..4274926 + 111 114564753 - Sfri_3601 - transcriptional regulator, HxlR family protein 3567 43.45 0 4274972..4276444 - 490 114564754 - Sfri_3602 - RNA-metabolising metallo-beta-lactamase 3568 42.35 0 4276814..4278022 + 402 114564755 - Sfri_3603 - porin 3569 43.96 0 4278189..4278734 - 181 114564756 - Sfri_3604 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 3570 47.43 +1 4279047..4280387 - 446 114564757 - Sfri_3605 - amidohydrolase 3571 40.38 0 4280546..4281070 + 174 114564758 - Sfri_3606 - GCN5-related N-acetyltransferase 3572 39.45 0 4281646..4283508 + 620 114564759 - Sfri_3607 - diguanylate cyclase/phosphodiesterase with GAF sensor 3573 43.48 0 4283613..4284824 - 403 114564760 - Sfri_3608 - oxidoreductase FAD-binding subunit 3574 42.98 0 4284938..4286596 - 552 114564761 - Sfri_3609 - hydroxylamine reductase 3575 43.36 0 4286968..4287954 - 328 114564762 - Sfri_3610 - hypothetical protein 3576 44.35 0 4288242..4288931 + 229 114564763 - Sfri_3611 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0