version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3149 45.50 +1 3802590..3803378 - 262 114564336 - Sfri_3175 - ribonuclease H 3150 41.92 0 3803553..3804356 - 267 114564337 - Sfri_3176 - putative lipoprotein 3151 43.46 0 3804634..3805206 + 190 114564338 - Sfri_3177 - NTPase 3152 44.83 0 3805199..3805720 + 173 114564339 - Sfri_3178 - GCN5-related N-acetyltransferase 3153 39.37 0 3805792..3807747 - 651 114564340 - Sfri_3179 - ankyrin 3154 42.75 0 3807928..3808968 + 346 114564341 - Sfri_3180 - aldo/keto reductase 3155 46.59 +1 3809081..3810370 + 429 114564342 - Sfri_3181 - SufS subfamily cysteine desulfurase 3156 43.42 0 3810436..3810891 + 151 114564343 - Sfri_3182 - Fe-S metabolism associated SufE 3157 43.96 0 3810919..3812085 + 388 114564344 - Sfri_3183 - twin-arginine translocation pathway signal 3158 44.55 0 3812235..3812858 - 207 114564345 - Sfri_3184 - adenylyl-sulfate kinase 3159 44.00 0 3812904..3814628 - 574 114564346 - Sfri_3185 - TrkA domain-containing protein 3160 42.27 0 3814632..3816074 - 480 114564347 cysN Sfri_3186 - sulfate adenylyltransferase subunit 1 3161 44.33 0 3816135..3817043 - 302 114564348 - Sfri_3187 - sulfate adenylyltransferase subunit 2 3162 45.91 +1 3817097..3817915 - 272 114564349 - Sfri_3188 - uroporphyrin-III C-methyltransferase 3163 38.50 -1 3818182..3819090 + 302 114564350 - Sfri_3189 - phospholipase A(1) 3164 40.06 0 3819254..3820978 - 574 114564351 - Sfri_3190 - hypothetical protein 3165 46.59 +1 3821859..3822650 - 263 114564352 - Sfri_3191 - phosphoadenosine phosphosulfate reductase 3166 45.09 0 3822643..3824334 - 563 114564353 - Sfri_3192 - sulfite reductase subunit beta 3167 44.11 0 3824413..3826203 - 596 114564354 - Sfri_3193 - sulfite reductase (NADPH) flavoprotein, alpha chain 3168 48.37 +2 3826670..3828199 + 509 114564355 pntA Sfri_3194 - NAD(P) transhydrogenase subunit alpha 3169 44.44 0 3828211..3829695 + 494 114564356 pntB Sfri_3195 - pyridine nucleotide transhydrogenase 3170 41.89 0 3829799..3830815 + 338 114564357 - Sfri_3196 - diguanylate cyclase with PAS/PAC sensor 3171 40.63 0 3831570..3832268 + 232 114564358 - Sfri_3197 - hypothetical protein 3172 41.09 0 3832492..3832968 - 158 114564359 - Sfri_3198 - transcriptional regulator, TetR family protein 3173 43.05 0 3833203..3834036 - 277 114564360 - Sfri_3199 - hypothetical protein 3174 45.56 +1 3834187..3835617 - 476 114564361 - Sfri_3200 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3175 46.09 +1 3835717..3836649 + 310 114564362 - Sfri_3201 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3176 41.99 0 3836815..3837195 - 126 114564363 - Sfri_3202 - hypothetical protein 3177 43.45 0 3837327..3837998 - 223 114564364 - Sfri_3203 - nitroreductase 3178 40.97 0 3838190..3838870 + 226 114564365 - Sfri_3204 - nucleoside-diphosphate-sugar epimerase 3179 35.63 -2 3838982..3839155 + 57 114564366 - Sfri_3205 - hypothetical protein 3180 41.38 0 3839332..3840549 - 405 114564367 - Sfri_3206 - Na(+)-translocating NADH-quinone reductase subunit F 3181 42.53 0 3840574..3841182 - 202 114564368 - Sfri_3207 - Na(+)-translocating NADH-quinone reductase subunit E 3182 41.87 0 3841192..3841812 - 206 114564369 - Sfri_3208 - Na(+)-translocating NADH-quinone reductase subunit D 3183 42.58 0 3841813..3842580 - 255 114564370 - Sfri_3209 - Na(+)-translocating NADH-quinone reductase subunit C 3184 45.19 0 3842570..3843784 - 404 114564371 - Sfri_3210 - Na(+)-translocating NADH-quinone reductase subunit B 3185 47.17 +1 3843784..3845163 - 459 114564372 - Sfri_3211 - Na(+)-translocating NADH-quinone reductase subunit A 3186 46.13 +1 3845509..3847212 - 567 162139116 - Sfri_3212 - cysteine/glutathione ABC transporter membrane/ATP-binding component 3187 44.17 0 3847254..3849044 - 596 114564374 - Sfri_3213 - cysteine/glutathione ABC transporter membrane/ATP-binding component 3188 43.15 0 3849366..3850424 - 352 114564375 - Sfri_3214 - hypothetical protein 3189 44.42 0 3850761..3852194 + 477 114564376 - Sfri_3215 - DEAD/DEAH box helicase domain-containing protein 3190 43.30 0 3852309..3853712 - 467 114564377 - Sfri_3216 - ATP-dependent RNA helicase DbpA 3191 43.60 0 3854038..3854904 - 288 114564378 - Sfri_3217 - pirin domain-containing protein 3192 39.58 0 3855126..3856022 + 298 114564379 - Sfri_3218 - hypothetical protein 3193 40.10 0 3856208..3857758 - 516 114564380 - Sfri_3219 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3194 37.27 -1 3858219..3858701 - 160 114564381 - Sfri_3220 - hypothetical protein 3195 35.34 -2 3858726..3858974 - 82 114564382 - Sfri_3221 - hypothetical protein 3196 37.92 -1 3859382..3860971 - 529 114564383 - Sfri_3222 - PepSY-associated TM helix domain-containing protein 3197 38.28 -1 3860968..3861270 - 100 114564384 - Sfri_3223 - hypothetical protein 3198 31.50 -2 3861267..3861539 - 90 114564385 - Sfri_3224 - hypothetical protein 3199 39.06 0 3861727..3863874 - 715 114564386 - Sfri_3225 - TonB-dependent siderophore receptor 3200 40.53 0 3864443..3864817 + 124 114564387 - Sfri_3226 - hypothetical protein 3201 39.07 0 3864994..3866073 - 359 114564388 - Sfri_3227 - diguanylate cyclase 3202 44.84 0 3866399..3866650 + 83 114564389 - Sfri_3228 - hypothetical protein 3203 35.81 -2 3866987..3867631 - 214 114564390 - Sfri_3229 - hypothetical protein 3204 38.50 -1 3868214..3869065 - 283 114564391 - Sfri_3230 - hypothetical protein 3205 41.25 0 3869706..3870476 - 256 114564392 - Sfri_3231 - ABC-2 type transporter 3206 43.27 0 3870476..3871411 - 311 114564393 - Sfri_3232 - ABC transporter related 3207 41.24 0 3871562..3872092 - 176 114564394 - Sfri_3233 - hypoxanthine phosphoribosyltransferase 3208 45.76 +1 3872100..3872759 - 219 114564395 - Sfri_3234 - aromatic acid decarboxylase 3209 44.51 0 3872786..3874225 - 479 114564396 - Sfri_3235 - UDP-N-acetylmuramate 3210 40.59 0 3874323..3874625 - 100 114564397 - Sfri_3236 - branched-chain amino acid transport 3211 47.39 +1 3874622..3875482 - 286 114564398 - Sfri_3237 - AzlC family protein 3212 40.24 0 3875779..3876531 - 250 114564399 - Sfri_3238 - peptidylprolyl isomerase, FKBP-type 3213 44.17 0 3876700..3877668 + 322 114564400 - Sfri_3239 - WD-40 repeat-containing protein 3214 37.56 -1 3877704..3877916 + 70 114564401 - Sfri_3240 - SlyX family protein 3215 46.00 +1 3878141..3878653 + 170 114564402 - Sfri_3241 - peptide deformylase 3216 42.60 0 3878647..3880017 + 456 114564403 - Sfri_3242 - TPR repeat-containing protein 3217 38.78 -1 3880055..3880660 + 201 114564404 - Sfri_3243 - hypothetical protein 3218 42.38 0 3880737..3883400 + 887 114564405 - Sfri_3244 - aminopeptidase N 3219 44.44 0 3883559..3884692 - 377 114564406 - Sfri_3245 - endonuclease/exonuclease/phosphatase 3220 40.59 0 3885036..3885641 + 201 114564407 - Sfri_3246 - hypothetical protein 3221 40.43 0 3885667..3886272 + 201 114564408 - Sfri_3247 - HAD family hydrolase 3222 37.39 -1 3886313..3886534 + 73 114564409 - Sfri_3248 - hypothetical protein 3223 38.97 -1 3886670..3887539 - 289 114564410 - Sfri_3249 - Sel1 domain-containing protein 3224 43.27 0 3887776..3888801 - 341 114564411 - Sfri_3250 - hypothetical protein 3225 45.10 0 3888922..3889992 - 356 114564412 - Sfri_3251 - secretion protein HlyD family protein 3226 43.42 0 3889989..3890474 - 161 114564413 - Sfri_3252 - transcriptional regulator, MarR family protein 3227 44.69 0 3890768..3893056 + 762 114564414 - Sfri_3253 - putative nitric oxide reductase (subunit B) transmembrane protein 3228 42.36 0 3893198..3894748 + 516 114564415 - Sfri_3254 - anaerobic nitric oxide reductase transcription regulator 3229 41.83 0 3894913..3895830 + 305 114564416 - Sfri_3255 - ErfK/YbiS/YcfS/YnhG family protein 3230 43.61 0 3895976..3896773 - 265 114564417 - Sfri_3256 - hypothetical protein 3231 43.02 0 3896876..3898093 + 405 114564418 - Sfri_3257 - AFG1 family ATPase 3232 38.25 -1 3898147..3898431 - 94 114564419 - Sfri_3258 - hypothetical protein 3233 45.39 +1 3898659..3899612 + 317 114564420 - Sfri_3259 - hypothetical protein 3234 41.77 0 3899835..3900818 - 327 114564421 - Sfri_3260 - diguanylate cyclase with GAF sensor 3235 44.35 0 3900905..3903754 - 949 114564422 - Sfri_3261 - (glutamate--ammonia-ligase) adenylyltransferase 3236 47.25 +1 3903918..3904880 + 320 114564423 - Sfri_3262 - hypothetical protein 3237 42.00 0 3904894..3905793 + 299 114564424 - Sfri_3263 - hypothetical protein 3238 44.75 0 3905797..3907557 + 586 114564425 - Sfri_3264 - spermidine synthase 3239 39.86 0 3907637..3908050 + 137 114564426 - Sfri_3265 - hypothetical protein 3240 41.30 0 3908061..3908750 + 229 114564427 - Sfri_3266 - phage shock protein A, PspA 3241 43.88 0 3908757..3909410 + 217 114564428 - Sfri_3267 - hypothetical protein 3242 40.48 0 3909434..3909769 + 111 114564429 - Sfri_3268 - hypothetical protein 3243 42.35 0 3909899..3910708 + 269 114564430 - Sfri_3269 - Ion transport 2 domain-containing protein 3244 44.98 0 3910920..3913220 - 766 114564431 - Sfri_3270 - penicillin-binding protein 1B 3245 46.64 +1 3913289..3915835 - 848 114564432 - Sfri_3271 - ATP-dependent helicase HrpB 3246 40.63 0 3916025..3918286 - 753 114564433 - Sfri_3272 - diguanylate cyclase/phosphodiesterase 3247 37.04 -1 3918420..3919040 + 206 114564434 - Sfri_3273 - putative 2'-5' RNA ligase 3248 45.88 +1 3919095..3920369 - 424 114564435 - Sfri_3274 - aminopeptidase B 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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