version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3106 34.02 -2 3748558..3748992 + 144 114564293 - Sfri_3131 - hypothetical protein 3107 38.45 -1 3749009..3750160 + 383 114564294 - Sfri_3132 - lipase, class 3 3108 36.76 -1 3750495..3750932 + 145 114564295 - Sfri_3133 - hypothetical protein 3109 34.22 -2 3751405..3751857 + 150 114564296 - Sfri_3134 - hypothetical protein 3110 43.90 0 3751933..3752358 - 141 114564297 - Sfri_3135 - CBS domain-containing protein 3111 43.67 0 3752448..3753182 - 244 114564298 - Sfri_3136 - hypothetical protein 3112 44.90 0 3753450..3755645 - 731 114564299 - Sfri_3137 - malate synthase G 3113 43.64 0 3755917..3756867 - 316 114564300 - Sfri_3138 - transcriptional regulator, LysR family protein 3114 42.13 0 3756977..3758557 + 526 114564301 - Sfri_3139 - isocitrate lyase 3115 46.73 +1 3759074..3759976 + 300 114564302 - Sfri_3140 - hypothetical protein 3116 30.04 -2 3760091..3760789 + 232 114564303 - Sfri_3141 - hypothetical protein 3117 31.61 -2 3760767..3761753 + 328 114564304 - Sfri_3142 - beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein 3118 32.81 -2 3761746..3762897 + 383 114564305 - Sfri_3143 - hypothetical protein 3119 42.95 0 3762942..3763253 + 103 114564306 - Sfri_3144 - transposase IS3/IS911 family protein 3120 42.31 0 3763307..3764119 + 270 114564307 - Sfri_3145 - integrase catalytic subunit 3121 39.53 0 3765462..3766655 + 397 114564308 - Sfri_3147 - transposase, IS4 family protein 3122 45.27 +1 3766755..3766997 + 80 114564309 - Sfri_3148 - hypothetical protein 3123 47.53 +1 3767594..3770482 - 962 114564310 - Sfri_3149 - glycine dehydrogenase 3124 44.36 0 3770722..3771111 - 129 114564311 - Sfri_3150 - glycine cleavage system protein H 3125 48.40 +2 3771194..3772288 - 364 114564312 gcvT Sfri_3151 - glycine cleavage system aminomethyltransferase T 3126 51.23 +2 3772508..3773731 - 407 114564313 - Sfri_3152 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein 3127 49.49 +2 3773756..3775030 - 424 114564314 - Sfri_3153 - 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3128 42.71 0 3775059..3775634 - 191 114564315 - Sfri_3154 - yecA family protein 3129 41.67 0 3775847..3776146 + 99 114564316 - Sfri_3155 - hypothetical protein 3130 41.15 0 3776712..3778169 + 485 114564317 - Sfri_3156 - glycerophosphoryl diester phosphodiesterase-like protein 3131 41.86 0 3778220..3780682 + 820 114564318 - Sfri_3157 - hypothetical protein 3132 39.88 0 3780786..3782678 + 630 114564319 - Sfri_3158 - hypothetical protein 3133 47.41 +1 3782848..3783543 + 231 114564320 - Sfri_3159 - 5-formyltetrahydrofolate cyclo-ligase 3134 46.94 +1 3783911..3785218 - 435 114564321 - Sfri_3160 - O-acetylhomoserine/O-acetylserine sulfhydrylase 3135 44.01 0 3785348..3786106 - 252 114564322 - Sfri_3161 - short chain dehydrogenase 3136 44.39 0 3786334..3787002 - 222 114564323 folE Sfri_3162 - GTP cyclohydrolase I 3137 42.98 0 3787029..3787391 - 120 114564324 folX Sfri_3163 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3138 41.54 0 3787581..3787970 + 129 114564325 - Sfri_3164 - putative thiol-disulphide oxidoreductase DCC 3139 43.28 0 3787982..3788866 + 294 114564326 - Sfri_3165 - hypothetical protein 3140 45.57 +1 3789174..3789974 + 266 114564327 - Sfri_3166 - short-chain dehydrogenase/reductase SDR 3141 44.16 0 3790089..3791021 - 310 114564328 - Sfri_3167 - alpha/beta hydrolase domain-containing protein 3142 42.03 0 3791021..3792193 - 390 114564329 - Sfri_3168 - major facilitator transporter 3143 43.23 0 3792362..3795868 + 1168 114564330 - Sfri_3169 - multi-sensor hybrid histidine kinase 3144 42.69 0 3795996..3796679 - 227 114564331 - Sfri_3170 - two component transcriptional regulator, LuxR family protein 3145 44.04 0 3796793..3799072 - 759 114564332 - Sfri_3171 - TonB-dependent receptor 3146 43.41 0 3799290..3800192 - 300 114564333 - Sfri_3172 - esterase, PHB depolymerase family protein 3147 44.98 0 3800557..3801492 - 311 114564334 - Sfri_3173 - malate dehydrogenase 3148 42.00 0 3802023..3802472 + 149 114564335 - Sfri_3174 - GCN5-related N-acetyltransferase 3149 45.50 +1 3802590..3803378 - 262 114564336 - Sfri_3175 - ribonuclease H 3150 41.92 0 3803553..3804356 - 267 114564337 - Sfri_3176 - putative lipoprotein 3151 43.46 0 3804634..3805206 + 190 114564338 - Sfri_3177 - NTPase 3152 44.83 0 3805199..3805720 + 173 114564339 - Sfri_3178 - GCN5-related N-acetyltransferase 3153 39.37 0 3805792..3807747 - 651 114564340 - Sfri_3179 - ankyrin 3154 42.75 0 3807928..3808968 + 346 114564341 - Sfri_3180 - aldo/keto reductase 3155 46.59 +1 3809081..3810370 + 429 114564342 - Sfri_3181 - SufS subfamily cysteine desulfurase 3156 43.42 0 3810436..3810891 + 151 114564343 - Sfri_3182 - Fe-S metabolism associated SufE 3157 43.96 0 3810919..3812085 + 388 114564344 - Sfri_3183 - twin-arginine translocation pathway signal 3158 44.55 0 3812235..3812858 - 207 114564345 - Sfri_3184 - adenylyl-sulfate kinase 3159 44.00 0 3812904..3814628 - 574 114564346 - Sfri_3185 - TrkA domain-containing protein 3160 42.27 0 3814632..3816074 - 480 114564347 cysN Sfri_3186 - sulfate adenylyltransferase subunit 1 3161 44.33 0 3816135..3817043 - 302 114564348 - Sfri_3187 - sulfate adenylyltransferase subunit 2 3162 45.91 +1 3817097..3817915 - 272 114564349 - Sfri_3188 - uroporphyrin-III C-methyltransferase 3163 38.50 -1 3818182..3819090 + 302 114564350 - Sfri_3189 - phospholipase A(1) 3164 40.06 0 3819254..3820978 - 574 114564351 - Sfri_3190 - hypothetical protein 3165 46.59 +1 3821859..3822650 - 263 114564352 - Sfri_3191 - phosphoadenosine phosphosulfate reductase 3166 45.09 0 3822643..3824334 - 563 114564353 - Sfri_3192 - sulfite reductase subunit beta 3167 44.11 0 3824413..3826203 - 596 114564354 - Sfri_3193 - sulfite reductase (NADPH) flavoprotein, alpha chain 3168 48.37 +2 3826670..3828199 + 509 114564355 pntA Sfri_3194 - NAD(P) transhydrogenase subunit alpha 3169 44.44 0 3828211..3829695 + 494 114564356 pntB Sfri_3195 - pyridine nucleotide transhydrogenase 3170 41.89 0 3829799..3830815 + 338 114564357 - Sfri_3196 - diguanylate cyclase with PAS/PAC sensor 3171 40.63 0 3831570..3832268 + 232 114564358 - Sfri_3197 - hypothetical protein 3172 41.09 0 3832492..3832968 - 158 114564359 - Sfri_3198 - transcriptional regulator, TetR family protein 3173 43.05 0 3833203..3834036 - 277 114564360 - Sfri_3199 - hypothetical protein 3174 45.56 +1 3834187..3835617 - 476 114564361 - Sfri_3200 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3175 46.09 +1 3835717..3836649 + 310 114564362 - Sfri_3201 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3176 41.99 0 3836815..3837195 - 126 114564363 - Sfri_3202 - hypothetical protein 3177 43.45 0 3837327..3837998 - 223 114564364 - Sfri_3203 - nitroreductase 3178 40.97 0 3838190..3838870 + 226 114564365 - Sfri_3204 - nucleoside-diphosphate-sugar epimerase 3179 35.63 -2 3838982..3839155 + 57 114564366 - Sfri_3205 - hypothetical protein 3180 41.38 0 3839332..3840549 - 405 114564367 - Sfri_3206 - Na(+)-translocating NADH-quinone reductase subunit F 3181 42.53 0 3840574..3841182 - 202 114564368 - Sfri_3207 - Na(+)-translocating NADH-quinone reductase subunit E 3182 41.87 0 3841192..3841812 - 206 114564369 - Sfri_3208 - Na(+)-translocating NADH-quinone reductase subunit D 3183 42.58 0 3841813..3842580 - 255 114564370 - Sfri_3209 - Na(+)-translocating NADH-quinone reductase subunit C 3184 45.19 0 3842570..3843784 - 404 114564371 - Sfri_3210 - Na(+)-translocating NADH-quinone reductase subunit B 3185 47.17 +1 3843784..3845163 - 459 114564372 - Sfri_3211 - Na(+)-translocating NADH-quinone reductase subunit A 3186 46.13 +1 3845509..3847212 - 567 162139116 - Sfri_3212 - cysteine/glutathione ABC transporter membrane/ATP-binding component 3187 44.17 0 3847254..3849044 - 596 114564374 - Sfri_3213 - cysteine/glutathione ABC transporter membrane/ATP-binding component 3188 43.15 0 3849366..3850424 - 352 114564375 - Sfri_3214 - hypothetical protein 3189 44.42 0 3850761..3852194 + 477 114564376 - Sfri_3215 - DEAD/DEAH box helicase domain-containing protein 3190 43.30 0 3852309..3853712 - 467 114564377 - Sfri_3216 - ATP-dependent RNA helicase DbpA 3191 43.60 0 3854038..3854904 - 288 114564378 - Sfri_3217 - pirin domain-containing protein 3192 39.58 0 3855126..3856022 + 298 114564379 - Sfri_3218 - hypothetical protein 3193 40.10 0 3856208..3857758 - 516 114564380 - Sfri_3219 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3194 37.27 -1 3858219..3858701 - 160 114564381 - Sfri_3220 - hypothetical protein 3195 35.34 -2 3858726..3858974 - 82 114564382 - Sfri_3221 - hypothetical protein 3196 37.92 -1 3859382..3860971 - 529 114564383 - Sfri_3222 - PepSY-associated TM helix domain-containing protein 3197 38.28 -1 3860968..3861270 - 100 114564384 - Sfri_3223 - hypothetical protein 3198 31.50 -2 3861267..3861539 - 90 114564385 - Sfri_3224 - hypothetical protein 3199 39.06 0 3861727..3863874 - 715 114564386 - Sfri_3225 - TonB-dependent siderophore receptor 3200 40.53 0 3864443..3864817 + 124 114564387 - Sfri_3226 - hypothetical protein 3201 39.07 0 3864994..3866073 - 359 114564388 - Sfri_3227 - diguanylate cyclase 3202 44.84 0 3866399..3866650 + 83 114564389 - Sfri_3228 - hypothetical protein 3203 35.81 -2 3866987..3867631 - 214 114564390 - Sfri_3229 - hypothetical protein 3204 38.50 -1 3868214..3869065 - 283 114564391 - Sfri_3230 - hypothetical protein 3205 41.25 0 3869706..3870476 - 256 114564392 - Sfri_3231 - ABC-2 type transporter 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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