version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3049 43.35 0 3680350..3681048 - 232 114564236 - Sfri_3074 - nucleotidyl transferase 3050 41.50 0 3681045..3682073 - 342 114564237 - Sfri_3075 - aminoglycoside phosphotransferase 3051 40.72 0 3682217..3684517 + 766 114564238 - Sfri_3076 - organic solvent tolerance protein 3052 41.92 0 3684662..3685966 + 434 114564239 - Sfri_3077 - PpiC-type peptidyl-prolyl cis-trans isomerase 3053 45.43 +1 3685976..3686959 + 327 114564240 - Sfri_3078 - 4-hydroxythreonine-4-phosphate dehydrogenase 3054 40.27 0 3686969..3687775 + 268 114564241 ksgA Sfri_3079 - dimethyladenosine transferase 3055 42.52 0 3687824..3688204 + 126 114564242 apaG Sfri_3080 - ApaG 3056 42.98 0 3688208..3689026 + 272 114564243 apaH Sfri_3081 - diadenosine tetraphosphatase 3057 41.89 0 3689181..3691202 + 673 114564244 - Sfri_3082 - methyl-accepting chemotaxis sensory transducer 3058 42.12 0 3691675..3692061 - 128 114564245 - Sfri_3083 - hypothetical protein 3059 40.37 0 3692159..3692641 - 160 114564246 - Sfri_3084 - dihydrofolate reductase 3060 42.25 0 3692661..3693131 - 156 114564247 - Sfri_3085 - hypothetical protein 3061 43.21 0 3693131..3693889 - 252 114564248 - Sfri_3086 - hypothetical protein 3062 42.33 0 3693910..3695076 - 388 114564249 obgE Sfri_3087 - GTPase ObgE 3063 41.57 0 3695277..3695531 - 84 114564250 rpmA Sfri_3088 - 50S ribosomal protein L27 3064 44.55 0 3695548..3695859 - 103 114564251 rplU Sfri_3089 - 50S ribosomal protein L21 3065 43.31 0 3696263..3697234 + 323 114564252 - Sfri_3090 - trans-hexaprenyltranstransferase 3066 41.33 0 3697343..3698005 - 220 114564253 - Sfri_3091 - uracil-DNA glycosylase 3067 42.60 0 3698085..3698645 + 186 114564254 - Sfri_3092 - methylation site containing protein 3068 39.14 0 3698716..3699042 + 108 114564255 - Sfri_3093 - hypothetical protein 3069 42.07 0 3699238..3699855 - 205 114564256 - Sfri_3094 - lysine exporter protein LysE/YggA 3070 41.39 0 3699992..3700525 + 177 114564257 - Sfri_3095 - thiol:disulfide interchange protein, putative 3071 42.88 0 3700647..3703202 - 851 114564258 - Sfri_3096 - TonB-dependent receptor 3072 42.15 0 3703662..3705260 + 532 114564259 - Sfri_3097 - AMP-dependent synthetase and ligase 3073 43.77 0 3705496..3707316 - 606 114564260 - Sfri_3098 - lipid ABC transporter ATPase/inner membrane protein 3074 41.43 0 3707442..3707960 + 172 114564261 - Sfri_3099 - methylation site containing protein 3075 40.88 0 3707989..3708399 - 136 114564262 - Sfri_3100 - hypothetical protein 3076 41.31 0 3708731..3709909 + 392 114564263 - Sfri_3101 - rRNA (guanine-N(2)-)-methyltransferase 3077 39.68 0 3710884..3711624 - 246 114564264 - Sfri_3102 - GntR domain-containing protein 3078 41.84 0 3712472..3714763 + 763 114564265 - Sfri_3103 - Poly(beta-D-mannuronate) lyase 3079 42.71 0 3714760..3717042 + 760 114564266 - Sfri_3104 - heparinase II/III family protein 3080 43.97 0 3717074..3717421 + 115 114564267 - Sfri_3105 - cupin 2 domain-containing protein 3081 43.67 0 3717418..3718704 + 428 114564268 - Sfri_3106 - major facilitator transporter 3082 42.46 0 3718707..3719648 + 313 114564269 - Sfri_3107 - ribokinase-like domain-containing protein 3083 43.80 0 3719835..3720608 + 257 114564270 - Sfri_3108 - methyltransferase type 12 3084 43.12 0 3720639..3721517 - 292 114564271 - Sfri_3109 - sterol desaturase family protein 3085 40.45 0 3721753..3722820 - 355 114564272 - Sfri_3110 - hypothetical protein 3086 42.33 0 3723050..3723616 + 188 114564273 - Sfri_3111 - putative lipoprotein 3087 42.22 0 3723676..3724260 + 194 114564274 - Sfri_3112 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 3088 37.80 -1 3724588..3724923 + 111 114564275 - Sfri_3113 - hypothetical protein 3089 44.82 0 3725052..3726479 + 475 114564276 - Sfri_3114 - major facilitator transporter 3090 46.87 +1 3726903..3727604 + 233 114564277 - Sfri_3115 - tRNA guanosine-2'-O-methyltransferase 3091 41.42 0 3727802..3728605 - 267 114564278 - Sfri_3116 - polysaccharide deacetylase 3092 42.90 0 3728931..3729557 + 208 114564279 - Sfri_3117 - hypothetical protein 3093 41.95 0 3729673..3730380 - 235 114564280 - Sfri_3118 - lysine exporter protein LysE/YggA 3094 45.38 +1 3730607..3730855 - 82 114564281 - Sfri_3119 - hypothetical protein 3095 39.35 0 3731139..3733397 - 752 114564282 - Sfri_3120 - multi-sensor hybrid histidine kinase 3096 41.85 0 3733384..3734193 - 269 114564283 - Sfri_3121 - ABC-type phosphate/phosphonate transport system 3097 44.64 0 3734625..3736898 + 757 114564284 - Sfri_3122 - catalase/peroxidase HPI 3098 40.13 0 3737317..3738066 - 249 114564285 - Sfri_3123 - hypothetical protein 3099 41.75 0 3738593..3739840 + 415 114564286 - Sfri_3124 - 6-aminohexanoate-dimer hydrolase 3100 47.90 +1 3740059..3740511 - 150 114564287 - Sfri_3125 - hypothetical protein 3101 45.45 +1 3740574..3741233 - 219 114564288 - Sfri_3126 - cytoplasmic chaperone TorD family protein 3102 47.96 +1 3741318..3741953 - 211 114564289 - Sfri_3127 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3103 48.40 +2 3741966..3744395 - 809 114564290 - Sfri_3128 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 3104 48.18 +1 3744436..3746442 - 668 114564291 - Sfri_3129 - outer membrane protein 3105 49.37 +2 3746458..3747411 - 317 114564292 - Sfri_3130 - cytochrome C family protein 3106 34.02 -2 3748558..3748992 + 144 114564293 - Sfri_3131 - hypothetical protein 3107 38.45 -1 3749009..3750160 + 383 114564294 - Sfri_3132 - lipase, class 3 3108 36.76 -1 3750495..3750932 + 145 114564295 - Sfri_3133 - hypothetical protein 3109 34.22 -2 3751405..3751857 + 150 114564296 - Sfri_3134 - hypothetical protein 3110 43.90 0 3751933..3752358 - 141 114564297 - Sfri_3135 - CBS domain-containing protein 3111 43.67 0 3752448..3753182 - 244 114564298 - Sfri_3136 - hypothetical protein 3112 44.90 0 3753450..3755645 - 731 114564299 - Sfri_3137 - malate synthase G 3113 43.64 0 3755917..3756867 - 316 114564300 - Sfri_3138 - transcriptional regulator, LysR family protein 3114 42.13 0 3756977..3758557 + 526 114564301 - Sfri_3139 - isocitrate lyase 3115 46.73 +1 3759074..3759976 + 300 114564302 - Sfri_3140 - hypothetical protein 3116 30.04 -2 3760091..3760789 + 232 114564303 - Sfri_3141 - hypothetical protein 3117 31.61 -2 3760767..3761753 + 328 114564304 - Sfri_3142 - beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein 3118 32.81 -2 3761746..3762897 + 383 114564305 - Sfri_3143 - hypothetical protein 3119 42.95 0 3762942..3763253 + 103 114564306 - Sfri_3144 - transposase IS3/IS911 family protein 3120 42.31 0 3763307..3764119 + 270 114564307 - Sfri_3145 - integrase catalytic subunit 3121 39.53 0 3765462..3766655 + 397 114564308 - Sfri_3147 - transposase, IS4 family protein 3122 45.27 +1 3766755..3766997 + 80 114564309 - Sfri_3148 - hypothetical protein 3123 47.53 +1 3767594..3770482 - 962 114564310 - Sfri_3149 - glycine dehydrogenase 3124 44.36 0 3770722..3771111 - 129 114564311 - Sfri_3150 - glycine cleavage system protein H 3125 48.40 +2 3771194..3772288 - 364 114564312 gcvT Sfri_3151 - glycine cleavage system aminomethyltransferase T 3126 51.23 +2 3772508..3773731 - 407 114564313 - Sfri_3152 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein 3127 49.49 +2 3773756..3775030 - 424 114564314 - Sfri_3153 - 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3128 42.71 0 3775059..3775634 - 191 114564315 - Sfri_3154 - yecA family protein 3129 41.67 0 3775847..3776146 + 99 114564316 - Sfri_3155 - hypothetical protein 3130 41.15 0 3776712..3778169 + 485 114564317 - Sfri_3156 - glycerophosphoryl diester phosphodiesterase-like protein 3131 41.86 0 3778220..3780682 + 820 114564318 - Sfri_3157 - hypothetical protein 3132 39.88 0 3780786..3782678 + 630 114564319 - Sfri_3158 - hypothetical protein 3133 47.41 +1 3782848..3783543 + 231 114564320 - Sfri_3159 - 5-formyltetrahydrofolate cyclo-ligase 3134 46.94 +1 3783911..3785218 - 435 114564321 - Sfri_3160 - O-acetylhomoserine/O-acetylserine sulfhydrylase 3135 44.01 0 3785348..3786106 - 252 114564322 - Sfri_3161 - short chain dehydrogenase 3136 44.39 0 3786334..3787002 - 222 114564323 folE Sfri_3162 - GTP cyclohydrolase I 3137 42.98 0 3787029..3787391 - 120 114564324 folX Sfri_3163 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3138 41.54 0 3787581..3787970 + 129 114564325 - Sfri_3164 - putative thiol-disulphide oxidoreductase DCC 3139 43.28 0 3787982..3788866 + 294 114564326 - Sfri_3165 - hypothetical protein 3140 45.57 +1 3789174..3789974 + 266 114564327 - Sfri_3166 - short-chain dehydrogenase/reductase SDR 3141 44.16 0 3790089..3791021 - 310 114564328 - Sfri_3167 - alpha/beta hydrolase domain-containing protein 3142 42.03 0 3791021..3792193 - 390 114564329 - Sfri_3168 - major facilitator transporter 3143 43.23 0 3792362..3795868 + 1168 114564330 - Sfri_3169 - multi-sensor hybrid histidine kinase 3144 42.69 0 3795996..3796679 - 227 114564331 - Sfri_3170 - two component transcriptional regulator, LuxR family protein 3145 44.04 0 3796793..3799072 - 759 114564332 - Sfri_3171 - TonB-dependent receptor 3146 43.41 0 3799290..3800192 - 300 114564333 - Sfri_3172 - esterase, PHB depolymerase family protein 3147 44.98 0 3800557..3801492 - 311 114564334 - Sfri_3173 - malate dehydrogenase 3148 42.00 0 3802023..3802472 + 149 114564335 - Sfri_3174 - GCN5-related N-acetyltransferase 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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