version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3018 42.45 0 3649284..3650171 + 295 114564205 - Sfri_3042 - band 7 protein 3019 41.25 0 3650389..3651537 + 382 114564206 - Sfri_3043 - hypothetical protein 3020 43.02 0 3651657..3652007 + 116 114564207 - Sfri_3044 - hypothetical protein 3021 41.08 0 3652116..3652580 + 154 114564208 - Sfri_3045 - peptidylprolyl isomerase, FKBP-type 3022 45.43 +1 3652701..3653915 - 404 114564209 - Sfri_3046 - peptidase M24 3023 45.47 +1 3654187..3655974 + 595 114564210 - Sfri_3047 - peptidase M24 3024 46.24 +1 3656744..3658099 + 451 114564211 - Sfri_3048 - xanthine/uracil/vitamin C permease 3025 47.13 +1 3658718..3660181 + 487 114564212 - Sfri_3049 - F0F1 ATP synthase subunit beta 3026 45.26 +1 3660218..3660628 + 136 114564213 - Sfri_3050 - F0F1 ATP synthase subunit epsilon 3027 44.44 0 3660829..3661206 + 125 114564214 - Sfri_3051 - F0F1-ATPase subunit, putative 3028 44.93 0 3661313..3661657 + 114 114564215 - Sfri_3052 - hypothetical protein 3029 45.88 +1 3661654..3662394 + 246 114564216 - Sfri_3053 - F0F1 ATP synthase subunit A 3030 46.81 +1 3662426..3662707 + 93 114564217 - Sfri_3054 - F0F1 ATP synthase subunit C 3031 40.74 0 3662711..3663547 + 278 114564218 - Sfri_3055 - H(+)-transporting ATP synthase, subunit B 3032 48.13 +1 3663531..3665084 + 517 114564219 - Sfri_3056 - F0F1 ATP synthase subunit alpha 3033 45.39 +1 3665081..3665959 + 292 114564220 - Sfri_3057 - H+transporting two-sector ATPase, gamma subunit 3034 44.06 0 3666276..3667049 + 257 114564221 - Sfri_3058 - MltA-interacting MipA family protein 3035 44.01 0 3667069..3667527 + 152 114564222 - Sfri_3059 - hypothetical protein 3036 38.74 -1 3667715..3668713 + 332 114564223 - Sfri_3060 - hypothetical protein 3037 43.10 0 3668852..3670162 - 436 114564224 - Sfri_3061 - periplasmic sensor signal transduction histidine kinase 3038 46.81 +1 3670159..3670863 - 234 114564225 - Sfri_3062 - two component transcriptional regulator, winged helix family protein 3039 43.10 0 3670866..3671285 - 139 114564226 - Sfri_3063 - hypothetical protein 3040 42.74 0 3671294..3672154 - 286 114564227 - Sfri_3064 - MltA-interacting MipA family protein 3041 33.33 -2 3672397..3672819 - 140 114564228 - Sfri_3065 - transcriptional regulator, MarR family protein 3042 37.36 -1 3672919..3673365 + 148 114564229 - Sfri_3066 - hypothetical protein 3043 36.99 -1 3673410..3673847 + 145 114564230 - Sfri_3067 - cupin 2 domain-containing protein 3044 44.39 0 3674357..3675658 + 433 114564231 - Sfri_3068 - DEAD/DEAH box helicase domain-containing protein 3045 43.08 0 3675784..3676419 + 211 114564232 - Sfri_3069 - redoxin domain-containing protein 3046 45.93 +1 3676745..3677935 + 396 114564233 purT Sfri_3070 - phosphoribosylglycinamide formyltransferase 2 3047 43.40 0 3678517..3679470 - 317 114564234 - Sfri_3072 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 3048 44.57 0 3679517..3680290 - 257 114564235 djlA Sfri_3073 - DNA-J like membrane chaperone protein 3049 43.35 0 3680350..3681048 - 232 114564236 - Sfri_3074 - nucleotidyl transferase 3050 41.50 0 3681045..3682073 - 342 114564237 - Sfri_3075 - aminoglycoside phosphotransferase 3051 40.72 0 3682217..3684517 + 766 114564238 - Sfri_3076 - organic solvent tolerance protein 3052 41.92 0 3684662..3685966 + 434 114564239 - Sfri_3077 - PpiC-type peptidyl-prolyl cis-trans isomerase 3053 45.43 +1 3685976..3686959 + 327 114564240 - Sfri_3078 - 4-hydroxythreonine-4-phosphate dehydrogenase 3054 40.27 0 3686969..3687775 + 268 114564241 ksgA Sfri_3079 - dimethyladenosine transferase 3055 42.52 0 3687824..3688204 + 126 114564242 apaG Sfri_3080 - ApaG 3056 42.98 0 3688208..3689026 + 272 114564243 apaH Sfri_3081 - diadenosine tetraphosphatase 3057 41.89 0 3689181..3691202 + 673 114564244 - Sfri_3082 - methyl-accepting chemotaxis sensory transducer 3058 42.12 0 3691675..3692061 - 128 114564245 - Sfri_3083 - hypothetical protein 3059 40.37 0 3692159..3692641 - 160 114564246 - Sfri_3084 - dihydrofolate reductase 3060 42.25 0 3692661..3693131 - 156 114564247 - Sfri_3085 - hypothetical protein 3061 43.21 0 3693131..3693889 - 252 114564248 - Sfri_3086 - hypothetical protein 3062 42.33 0 3693910..3695076 - 388 114564249 obgE Sfri_3087 - GTPase ObgE 3063 41.57 0 3695277..3695531 - 84 114564250 rpmA Sfri_3088 - 50S ribosomal protein L27 3064 44.55 0 3695548..3695859 - 103 114564251 rplU Sfri_3089 - 50S ribosomal protein L21 3065 43.31 0 3696263..3697234 + 323 114564252 - Sfri_3090 - trans-hexaprenyltranstransferase 3066 41.33 0 3697343..3698005 - 220 114564253 - Sfri_3091 - uracil-DNA glycosylase 3067 42.60 0 3698085..3698645 + 186 114564254 - Sfri_3092 - methylation site containing protein 3068 39.14 0 3698716..3699042 + 108 114564255 - Sfri_3093 - hypothetical protein 3069 42.07 0 3699238..3699855 - 205 114564256 - Sfri_3094 - lysine exporter protein LysE/YggA 3070 41.39 0 3699992..3700525 + 177 114564257 - Sfri_3095 - thiol:disulfide interchange protein, putative 3071 42.88 0 3700647..3703202 - 851 114564258 - Sfri_3096 - TonB-dependent receptor 3072 42.15 0 3703662..3705260 + 532 114564259 - Sfri_3097 - AMP-dependent synthetase and ligase 3073 43.77 0 3705496..3707316 - 606 114564260 - Sfri_3098 - lipid ABC transporter ATPase/inner membrane protein 3074 41.43 0 3707442..3707960 + 172 114564261 - Sfri_3099 - methylation site containing protein 3075 40.88 0 3707989..3708399 - 136 114564262 - Sfri_3100 - hypothetical protein 3076 41.31 0 3708731..3709909 + 392 114564263 - Sfri_3101 - rRNA (guanine-N(2)-)-methyltransferase 3077 39.68 0 3710884..3711624 - 246 114564264 - Sfri_3102 - GntR domain-containing protein 3078 41.84 0 3712472..3714763 + 763 114564265 - Sfri_3103 - Poly(beta-D-mannuronate) lyase 3079 42.71 0 3714760..3717042 + 760 114564266 - Sfri_3104 - heparinase II/III family protein 3080 43.97 0 3717074..3717421 + 115 114564267 - Sfri_3105 - cupin 2 domain-containing protein 3081 43.67 0 3717418..3718704 + 428 114564268 - Sfri_3106 - major facilitator transporter 3082 42.46 0 3718707..3719648 + 313 114564269 - Sfri_3107 - ribokinase-like domain-containing protein 3083 43.80 0 3719835..3720608 + 257 114564270 - Sfri_3108 - methyltransferase type 12 3084 43.12 0 3720639..3721517 - 292 114564271 - Sfri_3109 - sterol desaturase family protein 3085 40.45 0 3721753..3722820 - 355 114564272 - Sfri_3110 - hypothetical protein 3086 42.33 0 3723050..3723616 + 188 114564273 - Sfri_3111 - putative lipoprotein 3087 42.22 0 3723676..3724260 + 194 114564274 - Sfri_3112 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 3088 37.80 -1 3724588..3724923 + 111 114564275 - Sfri_3113 - hypothetical protein 3089 44.82 0 3725052..3726479 + 475 114564276 - Sfri_3114 - major facilitator transporter 3090 46.87 +1 3726903..3727604 + 233 114564277 - Sfri_3115 - tRNA guanosine-2'-O-methyltransferase 3091 41.42 0 3727802..3728605 - 267 114564278 - Sfri_3116 - polysaccharide deacetylase 3092 42.90 0 3728931..3729557 + 208 114564279 - Sfri_3117 - hypothetical protein 3093 41.95 0 3729673..3730380 - 235 114564280 - Sfri_3118 - lysine exporter protein LysE/YggA 3094 45.38 +1 3730607..3730855 - 82 114564281 - Sfri_3119 - hypothetical protein 3095 39.35 0 3731139..3733397 - 752 114564282 - Sfri_3120 - multi-sensor hybrid histidine kinase 3096 41.85 0 3733384..3734193 - 269 114564283 - Sfri_3121 - ABC-type phosphate/phosphonate transport system 3097 44.64 0 3734625..3736898 + 757 114564284 - Sfri_3122 - catalase/peroxidase HPI 3098 40.13 0 3737317..3738066 - 249 114564285 - Sfri_3123 - hypothetical protein 3099 41.75 0 3738593..3739840 + 415 114564286 - Sfri_3124 - 6-aminohexanoate-dimer hydrolase 3100 47.90 +1 3740059..3740511 - 150 114564287 - Sfri_3125 - hypothetical protein 3101 45.45 +1 3740574..3741233 - 219 114564288 - Sfri_3126 - cytoplasmic chaperone TorD family protein 3102 47.96 +1 3741318..3741953 - 211 114564289 - Sfri_3127 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3103 48.40 +2 3741966..3744395 - 809 114564290 - Sfri_3128 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 3104 48.18 +1 3744436..3746442 - 668 114564291 - Sfri_3129 - outer membrane protein 3105 49.37 +2 3746458..3747411 - 317 114564292 - Sfri_3130 - cytochrome C family protein 3106 34.02 -2 3748558..3748992 + 144 114564293 - Sfri_3131 - hypothetical protein 3107 38.45 -1 3749009..3750160 + 383 114564294 - Sfri_3132 - lipase, class 3 3108 36.76 -1 3750495..3750932 + 145 114564295 - Sfri_3133 - hypothetical protein 3109 34.22 -2 3751405..3751857 + 150 114564296 - Sfri_3134 - hypothetical protein 3110 43.90 0 3751933..3752358 - 141 114564297 - Sfri_3135 - CBS domain-containing protein 3111 43.67 0 3752448..3753182 - 244 114564298 - Sfri_3136 - hypothetical protein 3112 44.90 0 3753450..3755645 - 731 114564299 - Sfri_3137 - malate synthase G 3113 43.64 0 3755917..3756867 - 316 114564300 - Sfri_3138 - transcriptional regulator, LysR family protein 3114 42.13 0 3756977..3758557 + 526 114564301 - Sfri_3139 - isocitrate lyase 3115 46.73 +1 3759074..3759976 + 300 114564302 - Sfri_3140 - hypothetical protein 3116 30.04 -2 3760091..3760789 + 232 114564303 - Sfri_3141 - hypothetical protein 3117 31.61 -2 3760767..3761753 + 328 114564304 - Sfri_3142 - beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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