version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2972 42.82 0 3593898..3595625 + 575 114564159 - Sfri_2995 - DNA primase 2973 43.09 0 3595767..3597611 + 614 114564160 - Sfri_2996 - RNA polymerase, sigma 70 subunit, RpoD 2974 38.35 -1 3599501..3600457 + 318 114564161 - Sfri_2998 - hypothetical protein 2975 37.10 -1 3600502..3602148 - 548 114564162 - Sfri_2999 - diguanylate cyclase 2976 42.46 0 3602336..3603058 - 240 114564163 - Sfri_3000 - hypothetical protein 2977 42.73 0 3603144..3603803 - 219 114564164 - Sfri_3001 - pseudouridine synthase 2978 41.97 0 3603898..3606015 - 705 114564165 - Sfri_3002 - methyl-accepting chemotaxis sensory transducer 2979 45.65 +1 3606150..3607424 - 424 114564166 - Sfri_3003 - 4-aminobutyrate aminotransferase 2980 44.93 0 3607436..3608884 - 482 114564167 - Sfri_3004 - succinic semialdehyde dehydrogenase 2981 44.44 0 3608965..3610251 - 428 114564168 - Sfri_3005 - FAD dependent oxidoreductase 2982 42.77 0 3610459..3611274 - 271 114564169 - Sfri_3006 - binding-protein-dependent transport systems inner membrane component 2983 42.33 0 3611271..3612170 - 299 114564170 - Sfri_3007 - binding-protein-dependent transport systems inner membrane component 2984 43.71 0 3612167..3613303 - 378 114564171 - Sfri_3008 - spermidine/putrescine ABC transporter ATPase subunit 2985 41.60 0 3613463..3614563 - 366 114564172 - Sfri_3009 - extracellular solute-binding protein 2986 45.18 0 3614822..3616222 - 466 114564173 - Sfri_3010 - putative aminotransferase 2987 42.40 0 3616320..3617675 - 451 114564174 - Sfri_3011 - glutamate--ammonia ligase 2988 45.10 0 3617678..3618442 - 254 114564175 - Sfri_3012 - peptidase C26 2989 42.08 0 3618887..3619435 - 182 114564176 - Sfri_3013 - XRE family transcriptional regulator 2990 45.03 0 3619669..3620976 + 435 114564177 - Sfri_3014 - FAD dependent oxidoreductase 2991 34.66 -2 3621622..3623058 - 478 114564178 - Sfri_3015 - hypothetical protein 2992 42.95 0 3623223..3623534 + 103 114564179 - Sfri_3016 - transposase IS3/IS911 family protein 2993 42.31 0 3623588..3624400 + 270 114564180 - Sfri_3017 - integrase catalytic subunit 2994 40.45 0 3624789..3625505 - 238 114564181 - Sfri_3018 - hypothetical protein 2995 44.84 0 3626410..3627243 - 277 114564182 - Sfri_3019 - 3-mercaptopyruvate sulfurtransferase 2996 38.77 -1 3627294..3627716 - 140 114564183 - Sfri_3020 - hypothetical protein 2997 44.82 0 3627953..3629449 - 498 114564184 - Sfri_3021 - aldehyde dehydrogenase 2998 45.97 +1 3629762..3631114 + 450 114564185 - Sfri_3022 - beta alanine--pyruvate transaminase 2999 46.33 +1 3631168..3632667 + 499 114564186 - Sfri_3023 - methylmalonate-semialdehyde dehydrogenase 3000 41.07 0 3632680..3633054 + 124 114564187 - Sfri_3024 - protein of unknown function DUF861, cupin_3 3001 42.32 0 3633175..3633897 + 240 114564188 - Sfri_3025 - hypothetical protein 3002 42.78 0 3634028..3634207 - 59 114564189 - Sfri_3026 - hypothetical protein 3003 37.97 -1 3634615..3634959 + 114 114564190 - Sfri_3027 - hypothetical protein 3004 43.57 0 3635049..3635693 - 214 114564191 - Sfri_3028 - hypothetical protein 3005 42.65 0 3635693..3636304 - 203 114564192 - Sfri_3029 - hypothetical protein 3006 42.81 0 3636391..3636981 - 196 114564193 - Sfri_3030 - hypothetical protein 3007 42.13 0 3637002..3638240 - 412 114564194 - Sfri_3031 - cyclopropane-fatty-acyl-phospholipid synthase 3008 39.54 0 3638341..3639162 - 273 114564195 - Sfri_3032 - hypothetical protein 3009 40.98 0 3639159..3640427 - 422 114564196 - Sfri_3033 - amine oxidase 3010 45.33 +1 3640482..3641231 - 249 114564197 - Sfri_3034 - short-chain dehydrogenase/reductase SDR 3011 37.90 -1 3641231..3641734 - 167 114564198 - Sfri_3035 - hypothetical protein 3012 43.48 0 3641962..3643371 - 469 114564199 - Sfri_3036 - nitrite reductase (cytochrome; ammonia-forming) 3013 42.16 0 3643502..3644713 - 403 114564200 - Sfri_3037 - NnrS family protein 3014 44.70 0 3645027..3646460 - 477 114564201 - Sfri_3038 - deoxyribodipyrimidine photo-lyase 3015 40.19 0 3646472..3647434 - 320 114564202 - Sfri_3039 - hypothetical protein 3016 40.65 0 3647694..3648623 - 309 114564203 - Sfri_3040 - hypothetical protein 3017 42.98 0 3648763..3649239 + 158 114564204 - Sfri_3041 - hypothetical protein 3018 42.45 0 3649284..3650171 + 295 114564205 - Sfri_3042 - band 7 protein 3019 41.25 0 3650389..3651537 + 382 114564206 - Sfri_3043 - hypothetical protein 3020 43.02 0 3651657..3652007 + 116 114564207 - Sfri_3044 - hypothetical protein 3021 41.08 0 3652116..3652580 + 154 114564208 - Sfri_3045 - peptidylprolyl isomerase, FKBP-type 3022 45.43 +1 3652701..3653915 - 404 114564209 - Sfri_3046 - peptidase M24 3023 45.47 +1 3654187..3655974 + 595 114564210 - Sfri_3047 - peptidase M24 3024 46.24 +1 3656744..3658099 + 451 114564211 - Sfri_3048 - xanthine/uracil/vitamin C permease 3025 47.13 +1 3658718..3660181 + 487 114564212 - Sfri_3049 - F0F1 ATP synthase subunit beta 3026 45.26 +1 3660218..3660628 + 136 114564213 - Sfri_3050 - F0F1 ATP synthase subunit epsilon 3027 44.44 0 3660829..3661206 + 125 114564214 - Sfri_3051 - F0F1-ATPase subunit, putative 3028 44.93 0 3661313..3661657 + 114 114564215 - Sfri_3052 - hypothetical protein 3029 45.88 +1 3661654..3662394 + 246 114564216 - Sfri_3053 - F0F1 ATP synthase subunit A 3030 46.81 +1 3662426..3662707 + 93 114564217 - Sfri_3054 - F0F1 ATP synthase subunit C 3031 40.74 0 3662711..3663547 + 278 114564218 - Sfri_3055 - H(+)-transporting ATP synthase, subunit B 3032 48.13 +1 3663531..3665084 + 517 114564219 - Sfri_3056 - F0F1 ATP synthase subunit alpha 3033 45.39 +1 3665081..3665959 + 292 114564220 - Sfri_3057 - H+transporting two-sector ATPase, gamma subunit 3034 44.06 0 3666276..3667049 + 257 114564221 - Sfri_3058 - MltA-interacting MipA family protein 3035 44.01 0 3667069..3667527 + 152 114564222 - Sfri_3059 - hypothetical protein 3036 38.74 -1 3667715..3668713 + 332 114564223 - Sfri_3060 - hypothetical protein 3037 43.10 0 3668852..3670162 - 436 114564224 - Sfri_3061 - periplasmic sensor signal transduction histidine kinase 3038 46.81 +1 3670159..3670863 - 234 114564225 - Sfri_3062 - two component transcriptional regulator, winged helix family protein 3039 43.10 0 3670866..3671285 - 139 114564226 - Sfri_3063 - hypothetical protein 3040 42.74 0 3671294..3672154 - 286 114564227 - Sfri_3064 - MltA-interacting MipA family protein 3041 33.33 -2 3672397..3672819 - 140 114564228 - Sfri_3065 - transcriptional regulator, MarR family protein 3042 37.36 -1 3672919..3673365 + 148 114564229 - Sfri_3066 - hypothetical protein 3043 36.99 -1 3673410..3673847 + 145 114564230 - Sfri_3067 - cupin 2 domain-containing protein 3044 44.39 0 3674357..3675658 + 433 114564231 - Sfri_3068 - DEAD/DEAH box helicase domain-containing protein 3045 43.08 0 3675784..3676419 + 211 114564232 - Sfri_3069 - redoxin domain-containing protein 3046 45.93 +1 3676745..3677935 + 396 114564233 purT Sfri_3070 - phosphoribosylglycinamide formyltransferase 2 3047 43.40 0 3678517..3679470 - 317 114564234 - Sfri_3072 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 3048 44.57 0 3679517..3680290 - 257 114564235 djlA Sfri_3073 - DNA-J like membrane chaperone protein 3049 43.35 0 3680350..3681048 - 232 114564236 - Sfri_3074 - nucleotidyl transferase 3050 41.50 0 3681045..3682073 - 342 114564237 - Sfri_3075 - aminoglycoside phosphotransferase 3051 40.72 0 3682217..3684517 + 766 114564238 - Sfri_3076 - organic solvent tolerance protein 3052 41.92 0 3684662..3685966 + 434 114564239 - Sfri_3077 - PpiC-type peptidyl-prolyl cis-trans isomerase 3053 45.43 +1 3685976..3686959 + 327 114564240 - Sfri_3078 - 4-hydroxythreonine-4-phosphate dehydrogenase 3054 40.27 0 3686969..3687775 + 268 114564241 ksgA Sfri_3079 - dimethyladenosine transferase 3055 42.52 0 3687824..3688204 + 126 114564242 apaG Sfri_3080 - ApaG 3056 42.98 0 3688208..3689026 + 272 114564243 apaH Sfri_3081 - diadenosine tetraphosphatase 3057 41.89 0 3689181..3691202 + 673 114564244 - Sfri_3082 - methyl-accepting chemotaxis sensory transducer 3058 42.12 0 3691675..3692061 - 128 114564245 - Sfri_3083 - hypothetical protein 3059 40.37 0 3692159..3692641 - 160 114564246 - Sfri_3084 - dihydrofolate reductase 3060 42.25 0 3692661..3693131 - 156 114564247 - Sfri_3085 - hypothetical protein 3061 43.21 0 3693131..3693889 - 252 114564248 - Sfri_3086 - hypothetical protein 3062 42.33 0 3693910..3695076 - 388 114564249 obgE Sfri_3087 - GTPase ObgE 3063 41.57 0 3695277..3695531 - 84 114564250 rpmA Sfri_3088 - 50S ribosomal protein L27 3064 44.55 0 3695548..3695859 - 103 114564251 rplU Sfri_3089 - 50S ribosomal protein L21 3065 43.31 0 3696263..3697234 + 323 114564252 - Sfri_3090 - trans-hexaprenyltranstransferase 3066 41.33 0 3697343..3698005 - 220 114564253 - Sfri_3091 - uracil-DNA glycosylase 3067 42.60 0 3698085..3698645 + 186 114564254 - Sfri_3092 - methylation site containing protein 3068 39.14 0 3698716..3699042 + 108 114564255 - Sfri_3093 - hypothetical protein 3069 42.07 0 3699238..3699855 - 205 114564256 - Sfri_3094 - lysine exporter protein LysE/YggA 3070 41.39 0 3699992..3700525 + 177 114564257 - Sfri_3095 - thiol:disulfide interchange protein, putative 3071 42.88 0 3700647..3703202 - 851 114564258 - Sfri_3096 - TonB-dependent receptor 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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