version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2599 37.42 -1 3136860..3138107 - 415 114563787 - Sfri_2621 - tetratricopeptide domain-containing protein 2600 45.41 +1 3138107..3138727 - 206 114563788 - Sfri_2622 - TonB family protein 2601 42.22 0 3138729..3139133 - 134 114563789 - Sfri_2623 - biopolymer transport protein ExbD/TolR 2602 45.27 +1 3139147..3139674 - 175 114563790 - Sfri_2624 - MotA/TolQ/ExbB proton channel 2603 40.04 0 3139674..3141029 - 451 114563791 - Sfri_2625 - MotA/TolQ/ExbB proton channel 2604 40.74 0 3141029..3141811 - 260 114563792 - Sfri_2626 - hypothetical protein 2605 33.85 -2 3142196..3143155 - 319 114563793 - Sfri_2627 - methyltransferase type 11 2606 40.62 0 3143255..3145861 - 868 114563794 - Sfri_2628 - TonB-dependent receptor 2607 39.47 0 3146439..3148817 - 792 114563795 - Sfri_2629 - DNA polymerase II 2608 40.94 0 3148953..3151028 + 691 114563796 dinG Sfri_2630 - ATP-dependent DNA helicase DinG 2609 41.34 0 3151037..3151810 + 257 114563797 - Sfri_2631 - hypothetical protein 2610 39.52 0 3151807..3152469 + 220 114563798 - Sfri_2632 - primosomal replication protein N'', putative 2611 39.97 0 3152479..3153201 + 240 114563799 - Sfri_2633 - hypothetical protein 2612 42.86 0 3153201..3154124 + 307 114563800 - Sfri_2634 - histone deacetylase superfamily protein 2613 38.28 -1 3154223..3154525 + 100 114563801 - Sfri_2635 - hypothetical protein 2614 44.09 0 3155410..3157584 + 724 114563802 - Sfri_2636 - decaheme cytochrome c 2615 41.64 0 3157872..3159833 + 653 114563803 - Sfri_2637 - decaheme cytochrome c 2616 46.06 +1 3159931..3160920 + 329 114563804 - Sfri_2638 - cytochrome C family protein 2617 41.00 0 3160933..3163020 + 695 114563805 - Sfri_2639 - outer membrane protein precursor MtrB 2618 40.18 0 3163305..3164546 + 413 114563806 - Sfri_2640 - transcriptional regulator, CdaR 2619 44.30 0 3164676..3166034 + 452 114563807 - Sfri_2641 - gluconate transporter 2620 45.56 +1 3166055..3167224 + 389 114563808 - Sfri_2642 - glycerate kinase 2621 44.73 0 3167455..3169095 + 546 114563809 - Sfri_2643 - pyridoxal-dependent decarboxylase 2622 42.62 0 3169816..3170859 - 347 114563810 - Sfri_2644 - transposase IS116/IS110/IS902 family protein 2623 41.86 0 3171108..3171365 + 85 114563811 - Sfri_2645 - hypothetical protein 2624 41.31 0 3171384..3173051 - 555 114563812 - Sfri_2646 - hypothetical protein 2625 42.26 0 3174808..3175356 - 182 114563813 - Sfri_2647 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2626 42.66 0 3175401..3177233 - 610 114563814 uvrC Sfri_2648 - excinuclease ABC subunit C 2627 42.48 0 3177278..3177922 - 214 114563815 - Sfri_2649 - response regulator 2628 42.86 0 3178173..3178592 - 139 114563816 - Sfri_2650 - hypothetical protein 2629 40.74 0 3179103..3180938 - 611 114563817 - Sfri_2651 - PKD domain-containing protein 2630 45.55 +1 3181360..3183111 - 583 114563818 - Sfri_2652 - PTS system, glucose-specific IIBC subunit 2631 45.24 +1 3183149..3184198 - 349 114563819 - Sfri_2653 - PEP-utilizing enzyme 2632 37.25 -1 3184412..3186556 - 714 114563820 - Sfri_2654 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2633 39.14 0 3188023..3189813 + 596 114563821 - Sfri_2655 - ATP-dependent protease 2634 39.15 0 3189889..3190404 + 171 114563822 - Sfri_2656 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 2635 44.07 0 3190501..3190677 - 58 114563823 - Sfri_2657 - ribosome modulation factor 2636 40.05 0 3190929..3192818 - 629 114563824 - Sfri_2658 - hypothetical protein 2637 40.58 0 3192844..3194760 - 638 114563825 - Sfri_2659 - ABC transporter ATPase component 2638 40.51 0 3194762..3194998 - 78 114563826 - Sfri_2660 - glutaredoxin 2 2639 40.53 0 3194985..3197123 - 712 114563827 - Sfri_2661 - 23S rRNA m(2)G2445 methyltransferase 2640 39.12 0 3198655..3199017 - 120 114563828 - Sfri_2662 - rhodanese domain-containing protein 2641 42.36 0 3199399..3199941 - 180 114563829 - Sfri_2663 - tRNA/rRNA methyltransferase (SpoU) 2642 43.01 0 3199965..3200243 - 92 114563830 - Sfri_2664 - hypothetical protein 2643 42.19 0 3200247..3201398 - 383 114563831 - Sfri_2665 - ATP-NAD/AcoX kinase 2644 42.03 0 3201469..3202641 - 390 114563832 - Sfri_2666 - major facilitator transporter 2645 44.75 0 3202641..3203735 - 364 114563833 - Sfri_2667 - chorismate synthase 2646 40.21 0 3203792..3204736 - 314 114563834 - Sfri_2668 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2647 43.56 0 3204816..3205343 + 175 114563835 - Sfri_2669 - hypothetical protein 2648 43.67 0 3205436..3205909 - 157 114563836 - Sfri_2670 - phosphohistidine phosphatase, SixA 2649 40.00 0 3206098..3208887 + 929 114563837 - Sfri_2671 - peptidase M16 domain-containing protein 2650 33.36 -2 3209135..3213490 + 1451 114563838 - Sfri_2672 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2651 41.84 0 3213513..3214394 + 293 114563839 - Sfri_2673 - hypothetical protein 2652 35.90 -1 3214405..3214521 + 38 114565217 - Sfri_4067 - hypothetical protein 2653 39.91 0 3214631..3214843 - 70 114563840 - Sfri_2675 - hypothetical protein 2654 42.19 0 3215158..3217290 - 710 114563841 fadJ Sfri_2676 - multifunctional fatty acid oxidation complex subunit alpha 2655 44.47 0 3217290..3218600 - 436 114563842 fadI Sfri_2677 - 3-ketoacyl-CoA thiolase 2656 45.04 0 3218850..3219806 + 318 114563843 - Sfri_2678 - ATPase 2657 44.55 0 3219848..3220783 + 311 114563844 - Sfri_2679 - hypothetical protein 2658 41.17 0 3220784..3221332 + 182 114563845 - Sfri_2680 - hypothetical protein 2659 41.49 0 3221326..3222330 + 334 114563846 - Sfri_2681 - von Willebrand factor, type A 2660 41.88 0 3222330..3224435 + 701 114563847 - Sfri_2682 - TPR repeat-containing protein 2661 42.75 0 3224429..3226063 + 544 114563848 - Sfri_2683 - hypothetical protein 2662 42.20 0 3226165..3226728 + 187 114563849 - Sfri_2684 - RNA polymerase sigma factor 2663 39.55 0 3226721..3227428 + 235 114563850 - Sfri_2685 - hypothetical protein 2664 42.44 0 3227563..3229023 + 486 114563851 - Sfri_2686 - sodium/proline symporter 2665 42.37 0 3229445..3230728 + 427 114563852 - Sfri_2687 - membrane protein involved in aromatic hydrocarbon degradation 2666 40.96 0 3230929..3231990 + 353 114563853 - Sfri_2688 - RND family efflux transporter MFP subunit 2667 42.56 0 3231996..3235256 + 1086 114563854 - Sfri_2689 - acriflavin resistance protein 2668 38.03 -1 3235301..3235513 + 70 114563855 - Sfri_2690 - hypothetical protein 2669 44.18 0 3235527..3235904 + 125 114563856 - Sfri_2691 - rhodanese domain-containing protein 2670 44.49 0 3236368..3238824 + 818 114563857 - Sfri_2692 - peptidase S8 and S53, subtilisin, kexin, sedolisin 2671 38.89 -1 3238906..3239553 - 215 114563858 - Sfri_2693 - CBS domain-containing protein 2672 41.34 0 3239741..3240277 - 178 114563859 - Sfri_2694 - YaeQ family protein 2673 42.87 0 3240357..3241268 - 303 114563860 - Sfri_2695 - siroheme synthase 2674 42.50 0 3241277..3241636 - 119 114563861 - Sfri_2696 - rhodanese domain-containing protein 2675 44.24 0 3242024..3242344 - 106 114563862 - Sfri_2697 - hypothetical protein 2676 39.30 0 3242551..3242952 + 133 114563863 - Sfri_2698 - hypothetical protein 2677 41.98 0 3243220..3244167 - 315 114563864 secF Sfri_2699 - preprotein translocase subunit SecF 2678 44.46 0 3244182..3246032 - 616 114563865 secD Sfri_2700 - preprotein translocase subunit SecD 2679 38.74 -1 3246050..3246382 - 110 114563866 yajC Sfri_2701 - preprotein translocase subunit YajC 2680 42.31 0 3246408..3247532 - 374 114563867 tgt Sfri_2702 - queuine tRNA-ribosyltransferase 2681 43.23 0 3247675..3248715 - 346 114563868 - Sfri_2703 - S-adenosylmethionine--tRNA-ribosyltransferase-isomerase 2682 38.69 -1 3249167..3249763 + 198 114563869 - Sfri_2704 - hypothetical protein 2683 42.10 0 3249793..3250374 + 193 114563870 - Sfri_2705 - redoxin domain-containing protein 2684 40.98 0 3250526..3251179 + 217 114563871 - Sfri_2706 - pseudouridine synthase 2685 41.63 0 3251637..3252878 - 413 114563872 - Sfri_2707 - serine/threonine transporter SstT 2686 40.42 0 3253383..3254285 - 300 114563873 - Sfri_2708 - response regulator receiver modulated CheW protein 2687 42.08 0 3254784..3255263 - 159 114563874 - Sfri_2709 - dual specificity protein phosphatase 2688 43.59 0 3255275..3256561 - 428 114563875 - Sfri_2710 - DEAD/DEAH box helicase domain-containing protein 2689 45.11 0 3256634..3257185 - 183 114563876 - Sfri_2711 - methylated-DNA--protein-cysteine methyltransferase 2690 40.95 0 3257190..3258725 - 511 114563877 - Sfri_2712 - transcriptional regulator, AraC family protein 2691 42.02 0 3258938..3260767 + 609 114563878 - Sfri_2713 - ABC transporter related 2692 40.57 0 3261885..3263294 + 469 114563879 - Sfri_2714 - glutamyl-tRNA synthetase 2693 38.53 -1 3265560..3266579 + 339 114563880 - Sfri_2715 - TRAP dicarboxylate transporter, DctP subunit 2694 38.03 -1 3266603..3267304 + 233 114563881 - Sfri_2716 - tripartite ATP-independent periplasmic transporter DctQ 2695 41.06 0 3267304..3268701 + 465 114563882 - Sfri_2717 - TRAP dicarboxylate transporter, DctM subunit 2696 40.18 0 3268802..3270598 + 598 114563883 - Sfri_2718 - periplasmic sensor signal transduction histidine kinase 2697 42.14 0 3270601..3271974 + 457 114563884 - Sfri_2719 - two component, sigma54 specific, transcriptional regulator, Fis family protein 2698 41.83 0 3271971..3273206 - 411 114563885 - Sfri_2720 - major facilitator transporter 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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