version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2511 44.41 0 3026159..3027277 + 372 114563699 - Sfri_2531 - hypothetical protein 2512 44.94 0 3027274..3029349 + 691 114563700 - Sfri_2532 - transglutaminase domain-containing protein 2513 45.58 +1 3029453..3033265 + 1270 114563701 - Sfri_2533 - exodeoxyribonuclease V, gamma subunit 2514 44.71 0 3033265..3037095 + 1276 114563702 - Sfri_2534 - exodeoxyribonuclease V, beta subunit 2515 44.82 0 3037089..3039152 + 687 114563703 - Sfri_2535 - exodeoxyribonuclease V, alpha subunit 2516 36.23 -1 3039991..3040749 - 252 114563704 - Sfri_2536 - hypothetical protein 2517 33.81 -2 3041450..3042700 - 416 114563705 - Sfri_2538 - hypothetical protein 2518 35.61 -2 3043041..3043304 - 87 114563706 - Sfri_2539 - hypothetical protein 2519 38.21 -1 3043502..3043891 - 129 114563707 - Sfri_2540 - hypothetical protein 2520 35.59 -2 3044167..3044388 - 73 114563708 - Sfri_2541 - putative orphan protein 2521 44.40 0 3044848..3046446 + 532 114563709 - Sfri_2542 - alkaline phosphatase 2522 43.32 0 3046463..3048385 + 640 114563710 - Sfri_2543 - alkaline phosphatase 2523 36.84 -1 3048477..3049217 + 246 114563711 - Sfri_2544 - hypothetical protein 2524 41.33 0 3049763..3050212 + 149 114563712 - Sfri_2545 - excinuclease ATPase subunit 2525 46.84 +1 3050341..3050688 + 115 114563713 - Sfri_2546 - hypothetical protein 2526 38.89 -1 3050791..3051258 - 155 114563714 - Sfri_2547 - hypothetical protein 2527 41.86 0 3051258..3052430 - 390 114563715 - Sfri_2548 - PepSY-associated TM helix domain-containing protein 2528 42.56 0 3052685..3054787 + 700 114563716 - Sfri_2549 - TonB-dependent siderophore receptor 2529 40.75 0 3055342..3056352 + 336 114563717 ddl Sfri_2550 - D-alanyl-alanine synthetase A 2530 44.33 0 3056433..3057032 - 199 114563718 - Sfri_2551 - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein 2531 42.46 0 3057041..3057511 - 156 114563719 - Sfri_2552 - nitrate reductase cytochrome c-type subunit (NapB) 2532 43.41 0 3057523..3060012 - 829 114563720 - Sfri_2553 - nitrate reductase 2533 41.47 0 3060015..3060272 - 85 114563721 - Sfri_2554 - NapD family protein 2534 37.11 -1 3060306..3060464 - 52 114563722 - Sfri_2555 - periplasmic nitrate reductase NapE 2535 42.13 0 3060857..3061765 - 302 114563723 - Sfri_2556 - hypothetical protein 2536 40.91 0 3061806..3063020 - 404 114563724 - Sfri_2557 - hypothetical protein 2537 37.67 -1 3063179..3063547 + 122 114563725 folX Sfri_2558 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2538 42.11 0 3063629..3064528 + 299 114563726 - Sfri_2559 - hypothetical protein 2539 43.11 0 3064587..3065486 - 299 114563727 - Sfri_2560 - transcriptional regulator, LysR family protein 2540 41.27 0 3065802..3066305 + 167 114563728 - Sfri_2561 - glyoxalase/bleomycin resistance protein/dioxygenase 2541 41.88 0 3066395..3067084 - 229 114563729 - Sfri_2562 - pseudouridine synthase, Rsu 2542 35.65 -2 3067233..3068096 - 287 114563730 - Sfri_2563 - hypothetical protein 2543 38.82 -1 3068536..3068790 + 84 114563731 - Sfri_2565 - hypothetical protein 2544 45.05 0 3068857..3071340 - 827 114563732 - Sfri_2566 - hypothetical protein 2545 42.67 0 3071340..3072089 - 249 114563733 - Sfri_2567 - ABC transporter related 2546 42.18 0 3072121..3072708 + 195 114563734 - Sfri_2568 - arylesterase 2547 38.67 -1 3072884..3073951 + 355 114563735 - Sfri_2569 - hypothetical protein 2548 40.57 0 3074039..3075061 - 340 114563736 - Sfri_2570 - putative periplasmic protease 2549 44.46 0 3075172..3077661 - 829 114563737 - Sfri_2571 - hypothetical protein 2550 40.92 0 3077921..3078658 + 245 114563738 - Sfri_2572 - short chain dehydrogenase 2551 38.64 -1 3078748..3079086 - 112 114563739 - Sfri_2573 - helix-hairpin-helix repeat-containing competence protein ComEA 2552 40.57 0 3079227..3080318 - 363 114563740 - Sfri_2574 - hypothetical protein 2553 42.55 0 3080354..3081796 - 480 114563741 - Sfri_2575 - protein of unknown function DUF463, YcjX family protein 2554 37.88 -1 3081850..3082245 - 131 114563742 - Sfri_2576 - phage shock protein C, PspC 2555 42.74 0 3082232..3082465 - 77 114563743 pspB Sfri_2577 - phage shock protein B 2556 38.89 -1 3082491..3083174 - 227 114563744 - Sfri_2578 - phage shock protein A, PspA 2557 41.20 0 3083367..3084446 + 359 114563745 - Sfri_2579 - sigma54 specific transcriptional regulator, Fis family protein 2558 40.96 0 3084530..3086155 + 541 114563746 - Sfri_2580 - extracellular solute-binding protein 2559 42.15 0 3086156..3087187 + 343 114563747 - Sfri_2581 - binding-protein-dependent transport systems inner membrane component 2560 44.33 0 3087174..3088064 + 296 114563748 - Sfri_2582 - binding-protein-dependent transport systems inner membrane component 2561 44.05 0 3088068..3089075 + 335 114563749 - Sfri_2583 - oligopeptide/dipeptide ABC transporter, ATPase subunit 2562 38.80 -1 3089056..3089841 + 261 114563750 - Sfri_2584 - ABC transporter related 2563 42.23 0 3089947..3091149 + 400 114563751 - Sfri_2585 - trans-2-enoyl-CoA reductase 2564 43.29 0 3091321..3093087 - 588 114563752 - Sfri_2586 - flavocytochrome c 2565 38.07 -1 3093358..3094413 + 351 114563753 - Sfri_2587 - porin 2566 41.72 0 3094626..3095507 + 293 114563754 - Sfri_2588 - transcriptional regulator, LysR family protein 2567 39.90 0 3095604..3096836 + 410 114563755 - Sfri_2589 - hypothetical protein 2568 41.61 0 3096964..3097869 - 301 114563756 - Sfri_2590 - transcription activator, effector binding 2569 36.59 -1 3097993..3098607 - 204 114563757 - Sfri_2591 - pentapeptide repeat-containing protein 2570 41.59 0 3098688..3100565 - 625 114563758 - Sfri_2592 - PpiC-type peptidyl-prolyl cis-trans isomerase 2571 43.48 0 3100782..3101057 - 91 114563759 - Sfri_2593 - histone family protein DNA-binding protein 2572 42.43 0 3101319..3103670 - 783 114563760 - Sfri_2594 - ATP-dependent protease La 2573 41.84 0 3103802..3105082 - 426 114563761 clpX Sfri_2595 - ATP-dependent protease ATP-binding subunit 2574 41.01 0 3105213..3105824 - 203 114563762 clpP Sfri_2596 - ATP-dependent Clp protease proteolytic subunit 2575 41.76 0 3105915..3107219 - 434 114563763 tig Sfri_2597 - trigger factor 2576 43.51 0 3108228..3109082 + 284 114563764 - Sfri_2598 - methylenetetrahydrofolate dehydrogenase (NADP(+)) 2577 43.24 0 3109182..3110564 - 460 114563765 cysS Sfri_2599 - cysteinyl-tRNA synthetase 2578 37.98 -1 3110708..3111202 + 164 114563766 - Sfri_2600 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 2579 40.77 0 3111205..3111930 + 241 114563767 - Sfri_2601 - UDP-2,3-diacylglucosamine hydrolase 2580 36.92 -1 3111996..3112664 - 222 114563768 - Sfri_2602 - tRNA hydroxylase 2581 39.96 0 3112786..3114339 + 517 114563769 - Sfri_2603 - hypothetical protein 2582 38.38 -1 3114622..3115611 - 329 114563770 - Sfri_2604 - hypothetical protein 2583 40.20 0 3115621..3118884 - 1087 114563771 - Sfri_2605 - type III restriction enzyme, res subunit 2584 34.12 -2 3118894..3120039 - 381 114563772 - Sfri_2606 - hypothetical protein 2585 37.15 -1 3120040..3121428 - 462 114563773 - Sfri_2607 - restriction modification system DNA specificity subunit 2586 39.91 0 3121428..3123479 - 683 114563774 - Sfri_2608 - N-6 DNA methylase 2587 35.17 -2 3123719..3124207 + 162 114563775 - Sfri_2609 - hypothetical protein 2588 41.43 0 3124210..3125061 + 283 114563776 - Sfri_2610 - plasmid recombination enzyme 2589 38.71 -1 3125182..3125943 - 253 114563777 - Sfri_2611 - tRNA hydroxylase 2590 37.38 -1 3125945..3127750 - 601 114563778 - Sfri_2612 - recombinase 2591 40.38 0 3127722..3127877 - 51 114563779 - Sfri_2613 - putative tRNA-(MSA)-hydroxylase 2592 41.54 0 3128237..3128833 + 198 114563780 - Sfri_2614 - hypothetical protein 2593 39.80 0 3128902..3130572 - 556 114563781 - Sfri_2615 - glutaminyl-tRNA synthetase 2594 41.89 0 3130731..3133043 - 770 114563782 - Sfri_2616 - ferrous iron transport protein B 2595 40.00 0 3133036..3133275 - 79 114563783 - Sfri_2617 - FeoA family protein 2596 39.85 0 3133476..3134012 - 178 114563784 - Sfri_2618 - GCN5-related N-acetyltransferase 2597 42.29 0 3134082..3134360 - 92 114563785 - Sfri_2619 - PpiC-type peptidyl-prolyl cis-trans isomerase 2598 39.89 0 3134454..3136283 - 609 114563786 - Sfri_2620 - hypothetical protein 2599 37.42 -1 3136860..3138107 - 415 114563787 - Sfri_2621 - tetratricopeptide domain-containing protein 2600 45.41 +1 3138107..3138727 - 206 114563788 - Sfri_2622 - TonB family protein 2601 42.22 0 3138729..3139133 - 134 114563789 - Sfri_2623 - biopolymer transport protein ExbD/TolR 2602 45.27 +1 3139147..3139674 - 175 114563790 - Sfri_2624 - MotA/TolQ/ExbB proton channel 2603 40.04 0 3139674..3141029 - 451 114563791 - Sfri_2625 - MotA/TolQ/ExbB proton channel 2604 40.74 0 3141029..3141811 - 260 114563792 - Sfri_2626 - hypothetical protein 2605 33.85 -2 3142196..3143155 - 319 114563793 - Sfri_2627 - methyltransferase type 11 2606 40.62 0 3143255..3145861 - 868 114563794 - Sfri_2628 - TonB-dependent receptor 2607 39.47 0 3146439..3148817 - 792 114563795 - Sfri_2629 - DNA polymerase II 2608 40.94 0 3148953..3151028 + 691 114563796 dinG Sfri_2630 - ATP-dependent DNA helicase DinG 2609 41.34 0 3151037..3151810 + 257 114563797 - Sfri_2631 - hypothetical protein 2610 39.52 0 3151807..3152469 + 220 114563798 - Sfri_2632 - primosomal replication protein N'', putative 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0