version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2447 42.16 0 2935264..2937675 + 803 114563635 - Sfri_2465 - hypothetical protein 2448 38.82 -1 2937789..2939009 - 406 114563636 - Sfri_2466 - diguanylate cyclase 2449 41.18 0 2939052..2940173 - 373 114563637 - Sfri_2467 - 3-oxoacyl-(acyl carrier protein) synthase III 2450 42.44 0 2940560..2941525 + 321 114563638 - Sfri_2468 - cysteine synthase A 2451 42.62 0 2941840..2942733 + 297 114563639 - Sfri_2469 - transcriptional regulator, LysR family protein 2452 41.50 0 2942800..2944476 - 558 114563640 - Sfri_2470 - formate/nitrite transporter 2453 41.30 0 2945933..2948806 + 957 114563641 - Sfri_2471 - TonB-dependent receptor 2454 45.08 0 2949493..2951025 + 510 114563642 - Sfri_2472 - hypothetical protein 2455 41.70 0 2951431..2953713 + 760 114563643 - Sfri_2473 - formate acetyltransferase 2456 43.09 0 2953792..2954529 + 245 114563644 pflA Sfri_2474 - pyruvate formate lyase-activating enzyme 1 2457 42.69 0 2954583..2955020 - 145 114563645 - Sfri_2475 - hypothetical protein 2458 41.90 0 2955250..2956452 + 400 114563646 - Sfri_2476 - acetate kinase 2459 44.74 0 2956515..2958662 + 715 114563647 - Sfri_2477 - phosphate acetyltransferase 2460 43.38 0 2958949..2961636 - 895 114563648 - Sfri_2478 - DNA topoisomerase I 2461 41.20 0 2961980..2963314 + 444 114563649 - Sfri_2479 - succinylarginine dihydrolase 2462 42.83 0 2963473..2965935 - 820 114563650 - Sfri_2480 - Ig domain-containing protein 2463 42.26 0 2966159..2967469 + 436 114563651 - Sfri_2481 - sodium:dicarboxylate symporter 2464 40.30 0 2967657..2968331 + 224 114563652 - Sfri_2482 - lysine exporter protein LysE/YggA 2465 42.95 0 2968444..2969961 - 505 114563653 - Sfri_2483 - binding-protein-dependent transport systems inner membrane component 2466 41.59 0 2970019..2970696 - 225 114563654 - Sfri_2484 - ABC transporter related 2467 38.83 -1 2970696..2971550 - 284 114563655 - Sfri_2485 - phosphonate ABC transporter, periplasmic phosphonate-binding protein 2468 43.26 0 2971790..2972464 + 224 114563656 - Sfri_2486 - two component transcriptional regulator, winged helix family protein 2469 43.02 0 2972455..2973807 + 450 114563657 - Sfri_2487 - periplasmic sensor signal transduction histidine kinase 2470 42.24 0 2973878..2974573 - 231 114563658 - Sfri_2488 - 2OG-Fe(II) oxygenase 2471 40.53 0 2974689..2975939 + 416 114563659 - Sfri_2489 - metal dependent phosphohydrolase 2472 39.66 0 2976116..2977063 - 315 114563660 - Sfri_2490 - magnesium and cobalt transport protein CorA 2473 43.15 0 2977515..2978543 - 342 114563661 - Sfri_2491 - nucleoid-associated protein NdpA 2474 41.31 0 2978727..2978939 + 70 114563662 - Sfri_2492 - hypothetical protein 2475 43.33 0 2979025..2980815 + 596 114563663 - Sfri_2493 - sulfatase 2476 35.60 -2 2981546..2981986 - 146 114563664 - Sfri_2494 - hypothetical protein 2477 37.43 -1 2982841..2983548 - 235 114563665 - Sfri_2495 - hypothetical protein 2478 34.19 -2 2984943..2985872 - 309 114563666 - Sfri_2497 - HNH endonuclease 2479 46.18 +1 2986532..2987971 - 479 114563667 - Sfri_2498 - ankyrin 2480 45.98 +1 2988088..2990166 - 692 114563668 - Sfri_2499 - hypothetical protein 2481 40.94 0 2991322..2991978 + 218 114563669 - Sfri_2500 - glutathione S-transferase domain-containing protein 2482 41.11 0 2992131..2992889 - 252 114563670 - Sfri_2501 - hypothetical protein 2483 44.29 0 2993350..2994207 - 285 114563671 - Sfri_2502 - hypothetical protein 2484 44.58 0 2994580..2996286 - 568 114563672 - Sfri_2503 - acyl-CoA synthetase 2485 42.84 0 2996780..3000178 + 1132 114563673 - Sfri_2504 - multi-sensor hybrid histidine kinase 2486 44.68 0 3000193..3001188 + 331 114563674 - Sfri_2505 - response regulator receiver modulated metal dependent phosphohydrolase 2487 43.20 0 3001314..3002519 + 401 114563675 - Sfri_2506 - major facilitator transporter 2488 43.22 0 3002769..3003962 - 397 114563676 - Sfri_2507 - NADH:flavin oxidoreductase/NADH oxidase 2489 35.72 -2 3004749..3005627 + 292 114563677 - Sfri_2509 - transcriptional regulator, LysR family protein 2490 40.38 0 3005760..3006128 - 122 114563678 - Sfri_2510 - tetraheme cytochrome c 2491 45.14 0 3006139..3007662 - 507 114563679 - Sfri_2511 - flavocytochrome c 2492 40.11 0 3008292..3009191 + 299 114563680 - Sfri_2512 - transcriptional regulator, LysR family protein 2493 45.90 +1 3009313..3010800 - 495 114563681 - Sfri_2513 - glutathione synthase 2494 44.07 0 3010993..3011532 - 179 114563682 - Sfri_2514 - RNA polymerase sigma factor SigZ 2495 40.82 0 3011634..3011927 - 97 114563683 - Sfri_2515 - putative transcriptional regulator, ArsR family protein 2496 39.85 0 3012019..3012969 + 316 114563684 - Sfri_2516 - permease 2497 43.21 0 3013249..3014412 + 387 114563685 - Sfri_2517 - cation diffusion facilitator family transporter 2498 39.71 0 3014421..3014828 + 135 114563686 - Sfri_2518 - transcriptional regulator, MarR family protein 2499 38.99 0 3015000..3015335 - 111 114563687 - Sfri_2519 - hypothetical protein 2500 42.72 0 3015363..3015884 - 173 114563688 - Sfri_2520 - hypothetical protein 2501 39.06 0 3015898..3016596 - 232 114563689 - Sfri_2521 - hypothetical protein 2502 38.43 -1 3016753..3017733 - 326 114563690 - Sfri_2522 - peptidase M56, BlaR1 2503 41.93 0 3017735..3018118 - 127 114563691 - Sfri_2523 - transcriptional repressor, CopY family protein 2504 37.36 -1 3018529..3018702 + 57 114563692 - Sfri_2524 - hypothetical protein 2505 41.21 0 3018943..3019272 + 109 114563693 - Sfri_2525 - hypothetical protein 2506 42.57 0 3019285..3019890 - 201 114563694 - Sfri_2526 - putative sulfite oxidase subunit YedZ 2507 44.51 0 3019890..3020927 - 345 114563695 - Sfri_2527 - putative sulfite oxidase subunit YedY 2508 41.08 0 3021235..3022731 + 498 114563696 - Sfri_2528 - hypothetical protein 2509 43.29 0 3022888..3024816 + 642 114563697 - Sfri_2529 - lytic transglycosylase, catalytic 2510 45.83 +1 3025235..3026146 + 303 114563698 - Sfri_2530 - ATPase 2511 44.41 0 3026159..3027277 + 372 114563699 - Sfri_2531 - hypothetical protein 2512 44.94 0 3027274..3029349 + 691 114563700 - Sfri_2532 - transglutaminase domain-containing protein 2513 45.58 +1 3029453..3033265 + 1270 114563701 - Sfri_2533 - exodeoxyribonuclease V, gamma subunit 2514 44.71 0 3033265..3037095 + 1276 114563702 - Sfri_2534 - exodeoxyribonuclease V, beta subunit 2515 44.82 0 3037089..3039152 + 687 114563703 - Sfri_2535 - exodeoxyribonuclease V, alpha subunit 2516 36.23 -1 3039991..3040749 - 252 114563704 - Sfri_2536 - hypothetical protein 2517 33.81 -2 3041450..3042700 - 416 114563705 - Sfri_2538 - hypothetical protein 2518 35.61 -2 3043041..3043304 - 87 114563706 - Sfri_2539 - hypothetical protein 2519 38.21 -1 3043502..3043891 - 129 114563707 - Sfri_2540 - hypothetical protein 2520 35.59 -2 3044167..3044388 - 73 114563708 - Sfri_2541 - putative orphan protein 2521 44.40 0 3044848..3046446 + 532 114563709 - Sfri_2542 - alkaline phosphatase 2522 43.32 0 3046463..3048385 + 640 114563710 - Sfri_2543 - alkaline phosphatase 2523 36.84 -1 3048477..3049217 + 246 114563711 - Sfri_2544 - hypothetical protein 2524 41.33 0 3049763..3050212 + 149 114563712 - Sfri_2545 - excinuclease ATPase subunit 2525 46.84 +1 3050341..3050688 + 115 114563713 - Sfri_2546 - hypothetical protein 2526 38.89 -1 3050791..3051258 - 155 114563714 - Sfri_2547 - hypothetical protein 2527 41.86 0 3051258..3052430 - 390 114563715 - Sfri_2548 - PepSY-associated TM helix domain-containing protein 2528 42.56 0 3052685..3054787 + 700 114563716 - Sfri_2549 - TonB-dependent siderophore receptor 2529 40.75 0 3055342..3056352 + 336 114563717 ddl Sfri_2550 - D-alanyl-alanine synthetase A 2530 44.33 0 3056433..3057032 - 199 114563718 - Sfri_2551 - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein 2531 42.46 0 3057041..3057511 - 156 114563719 - Sfri_2552 - nitrate reductase cytochrome c-type subunit (NapB) 2532 43.41 0 3057523..3060012 - 829 114563720 - Sfri_2553 - nitrate reductase 2533 41.47 0 3060015..3060272 - 85 114563721 - Sfri_2554 - NapD family protein 2534 37.11 -1 3060306..3060464 - 52 114563722 - Sfri_2555 - periplasmic nitrate reductase NapE 2535 42.13 0 3060857..3061765 - 302 114563723 - Sfri_2556 - hypothetical protein 2536 40.91 0 3061806..3063020 - 404 114563724 - Sfri_2557 - hypothetical protein 2537 37.67 -1 3063179..3063547 + 122 114563725 folX Sfri_2558 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2538 42.11 0 3063629..3064528 + 299 114563726 - Sfri_2559 - hypothetical protein 2539 43.11 0 3064587..3065486 - 299 114563727 - Sfri_2560 - transcriptional regulator, LysR family protein 2540 41.27 0 3065802..3066305 + 167 114563728 - Sfri_2561 - glyoxalase/bleomycin resistance protein/dioxygenase 2541 41.88 0 3066395..3067084 - 229 114563729 - Sfri_2562 - pseudouridine synthase, Rsu 2542 35.65 -2 3067233..3068096 - 287 114563730 - Sfri_2563 - hypothetical protein 2543 38.82 -1 3068536..3068790 + 84 114563731 - Sfri_2565 - hypothetical protein 2544 45.05 0 3068857..3071340 - 827 114563732 - Sfri_2566 - hypothetical protein 2545 42.67 0 3071340..3072089 - 249 114563733 - Sfri_2567 - ABC transporter related 2546 42.18 0 3072121..3072708 + 195 114563734 - Sfri_2568 - arylesterase 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0