version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 189 45.11 0 206187..208835 - 882 114561377 - Sfri_0189 - phosphoenolpyruvate carboxylase 190 44.62 0 208988..210139 - 383 114561378 - Sfri_0190 - acetylornithine deacetylase 191 44.75 0 210403..211383 + 326 114561379 argC Sfri_0191 - N-acetyl-gamma-glutamyl-phosphate reductase 192 43.33 0 211414..212193 + 259 114561380 - Sfri_0192 - acetylglutamate kinase 193 43.05 0 212208..213113 + 301 114561381 - Sfri_0193 - ornithine carbamoyltransferase 194 44.85 0 213206..214429 + 407 114561382 - Sfri_0194 - argininosuccinate synthase 195 45.63 +1 214516..215946 + 476 114561383 - Sfri_0195 - argininosuccinate lyase 196 45.90 +1 216592..217641 + 349 114561384 - Sfri_0196 - hypothetical protein 197 46.59 +1 217648..218703 + 351 114561385 - Sfri_0197 - hypothetical protein 198 41.53 0 219013..219951 - 312 114561386 - Sfri_0198 - diguanylate cyclase 199 47.87 +1 220210..222513 - 767 114561387 - Sfri_0199 - twin-arginine translocation pathway signal 200 46.25 +1 222497..222976 - 159 114561388 - Sfri_0200 - 2Fe-2S iron-sulfur cluster binding domain-containing protein 201 47.58 +1 222995..224293 - 432 114561389 - Sfri_0201 - cytochrome c, class I 202 42.77 0 224961..225278 + 105 114561390 - Sfri_0202 - hypothetical protein 203 41.86 0 225281..225538 + 85 114561391 - Sfri_0203 - hypothetical protein 204 43.20 0 225563..227164 + 533 114561392 - Sfri_0204 - PepSY-associated TM helix domain-containing protein 205 45.11 0 227239..227934 - 231 114561393 - Sfri_0205 - pirin domain-containing protein 206 45.64 +1 228017..228463 - 148 114561394 - Sfri_0206 - DoxX family protein 207 43.51 0 228610..229503 + 297 114561395 - Sfri_0207 - transcriptional regulator, LysR family protein 208 45.80 +1 229640..230842 - 400 114561396 - Sfri_0208 - major facilitator transporter 209 46.37 +1 231035..231916 + 293 114561397 - Sfri_0209 - transcriptional regulator, LysR family protein 210 43.62 0 232046..232852 + 268 114561398 - Sfri_0210 - aldo/keto reductase 211 43.18 0 233105..233551 + 148 114561399 - Sfri_0211 - transcriptional regulator, MerR family protein 212 46.85 +1 233551..235791 + 746 114561400 - Sfri_0212 - copper-translocating P-type ATPase 213 43.30 0 235801..236151 + 116 114561401 - Sfri_0213 - plastocyanin domain-containing protein 214 41.52 0 236331..236843 + 170 114561402 - Sfri_0214 - hypothetical protein 215 44.73 0 236893..237366 + 157 114561403 - Sfri_0215 - redoxin domain-containing protein 216 44.07 0 237477..239423 - 648 114561404 - Sfri_0216 - methyl-accepting chemotaxis sensory transducer 217 44.82 0 239540..240880 - 446 114561405 envZ Sfri_0217 - osmolarity sensor protein 218 45.45 +1 240884..241609 - 241 114561406 ompR Sfri_0218 - osmolarity response regulator 219 42.98 0 241727..242524 - 265 114561407 - Sfri_0219 - hypothetical protein 220 46.49 +1 242736..243647 - 303 114561408 - Sfri_0220 - protoheme IX farnesyltransferase 221 42.42 0 243681..244010 - 109 114561409 - Sfri_0221 - cytochrome C oxidase subunit IV 222 42.77 0 244010..244645 - 211 114561410 - Sfri_0222 - cytochrome c oxidase, subunit III 223 45.74 +1 244645..246627 - 660 114561411 - Sfri_0223 - cytochrome-c oxidase 224 44.00 0 246630..247670 - 346 114561412 - Sfri_0224 - ubiquinol oxidase, subunit II 225 42.98 0 247848..248303 - 151 114561413 - Sfri_0225 - hypothetical protein 226 43.56 0 248689..249216 + 175 114561414 - Sfri_0226 - transcriptional regulator, TetR family protein 227 46.86 +1 249219..250268 + 349 114561415 - Sfri_0227 - alcohol dehydrogenase 228 42.07 0 250509..251321 + 270 114561416 - Sfri_0228 - regulatory protein RecX 229 45.92 +1 251511..252884 - 457 114561417 - Sfri_0229 - fumarate lyase 230 47.67 +1 252977..255703 + 908 114561418 - Sfri_0230 - aconitate hydratase 1 231 37.15 -1 256270..256950 + 226 114561419 - Sfri_0231 - putative integral membrane protein 232 43.97 0 257187..257966 - 259 114561420 - Sfri_0232 - acetoin reductases 233 41.18 0 258460..259071 - 203 114561421 - Sfri_0233 - hypothetical protein 234 43.42 0 259285..259770 - 161 114561422 - Sfri_0234 - transcription elongation factor GreB 235 44.58 0 259984..262356 + 790 114561423 - Sfri_0235 - RNA-binding S1 domain-containing protein 236 41.29 0 262621..264228 + 535 114561424 - Sfri_0236 - sulfatase 237 41.89 0 264239..264682 + 147 114561425 - Sfri_0237 - diacylglycerol kinase 238 37.19 -1 264859..265533 + 224 114561426 - Sfri_0238 - two component transcriptional regulator, winged helix family protein 239 39.74 0 265533..266969 + 478 114561427 - Sfri_0239 - periplasmic sensor signal transduction histidine kinase 240 42.51 0 267322..269358 + 678 114561428 - Sfri_0240 - sulfatase 241 43.79 0 269350..269856 - 168 114561429 - Sfri_0241 - hypothetical protein 242 44.86 0 269934..270740 - 268 114561430 - Sfri_0242 - bioH protein 243 43.99 0 270784..271590 + 268 114561431 - Sfri_0243 - competence protein ComF 244 44.91 0 271862..272440 + 192 114561432 - Sfri_0244 - putative DNA uptake protein 245 44.55 0 272549..272878 - 109 114561433 - Sfri_0245 - peptidylprolyl isomerase, FKBP-type 246 40.88 0 272915..274849 - 644 114561434 - Sfri_0246 - peptidase S9 prolyl oligopeptidase 247 43.53 0 274921..276264 - 447 114561435 - Sfri_0247 - MATE efflux family protein 248 43.44 0 276279..277337 + 352 114561436 - Sfri_0248 - polysaccharide deacetylase 249 44.23 0 277356..277970 - 204 114561437 - Sfri_0249 - electron transport protein SCO1/SenC 250 42.65 0 277998..278909 - 303 114561438 - Sfri_0250 - protoheme IX farnesyltransferase 251 44.55 0 278923..279903 - 326 114561439 - Sfri_0251 - cytochrome oxidase assembly 252 42.75 0 279903..280454 - 183 114561440 - Sfri_0252 - hypothetical protein 253 42.15 0 280512..281339 - 275 114561441 - Sfri_0253 - hypothetical protein 254 41.67 0 281326..281505 + 59 114561442 - Sfri_0254 - hypothetical protein 255 41.21 0 281522..282397 - 291 114561443 - Sfri_0255 - cytochrome c oxidase, subunit III 256 43.97 0 282394..282957 - 187 114561444 - Sfri_0256 - cytochrome C oxidase assembly protein 257 45.93 +1 282959..284554 - 531 114561445 - Sfri_0257 - cytochrome-c oxidase 258 46.94 +1 284564..286150 - 528 114561446 - Sfri_0258 - cytochrome c oxidase, subunit II 259 44.58 0 286546..287052 - 168 114561447 - Sfri_0259 - hypothetical protein 260 43.58 0 287049..287663 - 204 114561448 - Sfri_0260 - LexA repressor 261 41.17 0 287928..290351 + 807 114561449 - Sfri_0261 - glycerol-3-phosphate acyltransferase 262 44.15 0 290351..291607 + 418 114561450 - Sfri_0262 - aromatic amino acid transporter 263 45.69 +1 291753..292529 + 258 114561451 - Sfri_0263 - glyoxalase/bleomycin resistance protein/dioxygenase 264 39.77 0 292779..293042 + 87 114561452 - Sfri_0264 - hypothetical protein 265 37.45 -1 293039..293305 + 88 114561453 - Sfri_0265 - hypothetical protein 266 44.50 0 293402..296545 - 1047 114561454 - Sfri_0266 - heavy metal efflux pump, CzcA family protein 267 45.20 0 296557..298065 - 502 114561455 - Sfri_0267 - RND family efflux transporter MFP subunit 268 46.86 +1 298161..298478 - 105 114561456 - Sfri_0268 - hypothetical protein 269 45.64 +1 298584..299030 - 148 114561457 - Sfri_0269 - hypothetical protein 270 39.39 0 299214..299939 - 241 114561458 - Sfri_0270 - hypothetical protein 271 41.63 0 299939..300697 - 252 114561459 - Sfri_0271 - hypothetical protein 272 41.31 0 301407..301970 + 187 114561460 - Sfri_0272 - NapC/NirT cytochrome c domain-containing protein 273 40.92 0 302050..302352 - 100 114561461 - Sfri_0273 - hypothetical protein 274 42.83 0 302357..302956 - 199 114561462 - Sfri_0274 - putative methyltransferase 275 44.95 0 303137..304900 + 587 114561463 - Sfri_0275 - signal recognition particle-docking protein FtsY 276 45.22 +1 304904..305593 + 229 114561464 - Sfri_0276 - cell division ATP-binding protein FtsE 277 40.89 0 305590..306555 + 321 114561465 - Sfri_0277 - hypothetical protein 278 42.31 0 306788..307645 + 285 114561466 - Sfri_0278 - RNA polymerase factor sigma-32 279 42.25 0 307891..309438 - 515 114561467 - Sfri_0279 - O-succinylbenzoate-CoA ligase 280 40.91 0 309438..310532 - 364 114561468 - Sfri_0280 - O-succinylbenzoate synthase 281 44.77 0 310535..311347 - 270 114561469 - Sfri_0281 - alpha/beta hydrolase fold 282 45.17 0 311347..313086 - 579 114561470 - Sfri_0282 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 283 43.41 0 313307..314140 + 277 114561471 - Sfri_0283 - putative signal transduction protein 284 40.30 0 314189..314662 - 157 114561472 - Sfri_0284 - transcriptional regulator, AsnC family protein 285 43.22 0 314791..316074 + 427 114561473 - Sfri_0285 - inner membrane protein YjeH 286 40.44 0 316086..316535 - 149 114561474 - Sfri_0286 - hypothetical protein 287 41.13 0 316665..317228 - 187 114561475 - Sfri_0287 - hypothetical protein 288 40.39 0 317399..318121 + 240 114561476 - Sfri_0288 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0