version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2317 40.16 0 2778764..2780947 + 727 114563505 - Sfri_2334 - peptidyl-dipeptidase Dcp 2318 41.10 0 2781380..2783479 + 699 114563506 cpdB Sfri_2335 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 2319 41.77 0 2783606..2784091 - 161 114563507 - Sfri_2336 - hypothetical protein 2320 45.37 +1 2784084..2784806 - 240 114563508 - Sfri_2337 - NAD-dependent deacetylase 2321 39.41 0 2785087..2785596 + 169 114563509 fur Sfri_2338 - ferric uptake regulator 2322 41.10 0 2785678..2786604 - 308 114563510 - Sfri_2339 - auxin efflux carrier 2323 44.79 0 2786728..2787600 - 290 114563511 - Sfri_2340 - succinyl-CoA synthetase, alpha subunit 2324 44.04 0 2787600..2788766 - 388 114563512 sucC Sfri_2341 - succinyl-CoA synthetase subunit beta 2325 43.44 0 2788842..2790038 - 398 114563513 - Sfri_2342 - 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2326 44.17 0 2790067..2792889 - 940 114563514 kgd Sfri_2343 - alpha-ketoglutarate decarboxylase 2327 39.97 0 2793092..2793799 - 235 114563515 sdhB Sfri_2344 - succinate dehydrogenase iron-sulfur subunit 2328 43.41 0 2793816..2795582 - 588 114563516 sdhA Sfri_2345 - succinate dehydrogenase flavoprotein subunit 2329 39.37 0 2795583..2795930 - 115 114563517 - Sfri_2346 - succinate dehydrogenase, cytochrome b subunit 2330 44.44 0 2795924..2796319 - 131 114563518 - Sfri_2347 - succinate dehydrogenase, cytochrome b subunit 2331 42.35 0 2796729..2798015 + 428 114563519 gltA Sfri_2348 - type II citrate synthase 2332 35.84 -2 2798694..2799131 - 145 114563520 - Sfri_2349 - hypothetical protein 2333 38.08 -1 2799118..2799960 - 280 114563521 - Sfri_2350 - hypothetical protein 2334 34.97 -2 2800994..2801359 - 121 114563522 - Sfri_2352 - hypothetical protein 2335 35.29 -2 2801437..2801793 - 118 114563523 - Sfri_2353 - hypothetical protein 2336 33.33 -2 2801936..2802295 - 119 114563524 - Sfri_2354 - hypothetical protein 2337 42.72 0 2802296..2806780 - 1494 114563525 - Sfri_2355 - YD repeat-containing protein 2338 41.06 0 2806787..2807731 - 314 114563526 - Sfri_2356 - hypothetical protein 2339 38.42 -1 2807728..2808828 - 366 114563527 - Sfri_2357 - hypothetical protein 2340 48.80 +2 2808850..2809140 - 96 114563528 - Sfri_2358 - PAAR repeat-containing protein 2341 43.22 0 2809183..2809536 - 117 114563529 - Sfri_2359 - hypothetical protein 2342 40.28 0 2809539..2811395 - 618 114563530 - Sfri_2360 - Rhs element Vgr protein 2343 39.38 0 2811466..2811945 - 159 114563531 - Sfri_2361 - hypothetical protein 2344 39.39 0 2812315..2814921 - 868 114563532 - Sfri_2362 - ATPase 2345 41.07 0 2814941..2815948 - 335 114563533 - Sfri_2363 - hypothetical protein 2346 39.62 0 2815945..2817774 - 609 114563534 - Sfri_2364 - hypothetical protein 2347 38.71 -1 2817771..2818235 - 154 114563535 - Sfri_2365 - hypothetical protein 2348 39.16 0 2818268..2819056 - 262 114563536 - Sfri_2366 - virulence protein, SciE type 2349 39.71 0 2819071..2820606 - 511 114563537 - Sfri_2367 - hypothetical protein 2350 41.97 0 2820658..2822151 - 497 114563538 - Sfri_2368 - hypothetical protein 2351 38.72 -1 2822151..2822651 - 166 114563539 - Sfri_2369 - hypothetical protein 2352 40.20 0 2822693..2823799 - 368 114563540 - Sfri_2370 - ImpA domain-containing protein 2353 38.67 -1 2824086..2824853 - 255 114563541 - Sfri_2371 - protein serine/threonine phosphatase 2354 41.53 0 2824844..2825575 - 243 114563542 - Sfri_2372 - hypothetical protein 2355 37.90 -1 2825557..2829105 - 1182 114563543 - Sfri_2373 - ImcF domain-containing protein 2356 40.16 0 2829129..2830418 - 429 114563544 - Sfri_2374 - OmpA/MotB domain-containing protein 2357 40.63 0 2830443..2831771 - 442 114563545 - Sfri_2375 - hypothetical protein 2358 37.37 -1 2831796..2832266 - 156 114563546 - Sfri_2376 - hypothetical protein 2359 40.67 0 2832285..2833661 - 458 114563547 - Sfri_2377 - FHA domain-containing protein 2360 37.21 -1 2833694..2835679 - 661 114563548 - Sfri_2378 - serine/threonine protein kinase 2361 36.38 -1 2835999..2836490 + 163 114563549 - Sfri_2379 - OmpA/MotB domain-containing protein 2362 39.98 0 2836885..2837727 - 280 114563550 - Sfri_2380 - hypothetical protein 2363 41.71 0 2838049..2839122 + 357 114563551 - Sfri_2381 - RND family efflux transporter MFP subunit 2364 42.99 0 2839135..2842386 + 1083 114563552 - Sfri_2382 - acriflavin resistance protein 2365 44.03 0 2842383..2845448 + 1021 114563553 - Sfri_2383 - acriflavin resistance protein 2366 41.92 0 2845678..2846562 + 294 114563554 - Sfri_2384 - beta-lactamase domain-containing protein 2367 42.08 0 2846678..2847409 - 243 114563555 - Sfri_2385 - Mn2+-dependent serine/threonine protein kinase 2368 37.85 -1 2847796..2847972 - 58 114563556 - Sfri_2386 - hypothetical protein 2369 41.57 0 2847962..2848969 - 335 114563557 - Sfri_2387 - tetraacyldisaccharide 4'-kinase 2370 43.21 0 2848986..2850788 - 600 114563558 - Sfri_2388 - lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 2371 41.75 0 2850826..2853321 - 831 114563559 - Sfri_2389 - DNA internalization-related competence protein ComEC/Rec2 2372 42.75 0 2853353..2853862 + 169 114563560 - Sfri_2390 - hypothetical protein 2373 34.72 -2 2853923..2854354 - 143 114563561 - Sfri_2391 - transcriptional regulator, MarR family protein 2374 42.14 0 2854552..2855346 + 264 114563562 - Sfri_2392 - FAD-binding 9, siderophore-interacting domain-containing protein 2375 42.15 0 2855547..2855807 - 86 114563563 - Sfri_2393 - hypothetical protein 2376 40.87 0 2855804..2856400 - 198 114563564 - Sfri_2394 - GCN5-related N-acetyltransferase 2377 43.32 0 2856410..2857651 - 413 114563565 - Sfri_2395 - lipoprotein releasing system, transmembrane protein, LolC/E family protein 2378 44.58 0 2857648..2858367 - 239 114563566 - Sfri_2396 - lipoprotein releasing system, ATP-binding protein 2379 42.89 0 2858367..2859611 - 414 114563567 - Sfri_2397 - lipoprotein releasing system, transmembrane protein, LolC/E family protein 2380 38.83 -1 2859769..2860368 + 199 114563568 - Sfri_2398 - hypothetical protein 2381 44.16 0 2860423..2863959 + 1178 114563569 - Sfri_2399 - transcription-repair coupling factor 2382 42.90 0 2863949..2864941 + 330 114563570 - Sfri_2400 - hypothetical protein 2383 43.37 0 2865078..2866103 - 341 114563571 - Sfri_2401 - beta-hexosaminidase 2384 44.73 0 2866337..2867713 + 458 114563572 - Sfri_2402 - L-serine dehydratase 1 2385 35.90 -1 2867923..2868390 - 155 114563573 - Sfri_2403 - CreA family protein 2386 44.21 0 2868723..2870129 - 468 114563574 - Sfri_2404 - putative chaperone 2387 31.87 -2 2870490..2870762 + 90 114563575 - Sfri_2405 - hypothetical protein 2388 42.94 0 2870824..2871156 - 110 114563576 - Sfri_2406 - hypothetical protein 2389 44.54 0 2871300..2874119 - 939 114563577 - Sfri_2407 - DNA polymerase III, subunits gamma and tau 2390 40.98 0 2874270..2874818 - 182 114563578 - Sfri_2408 - adenine phosphoribosyltransferase 2391 40.71 0 2874956..2875321 - 121 114563579 - Sfri_2409 - hypothetical protein 2392 34.17 -2 2875405..2875524 - 39 114563580 - Sfri_2410 - hypothetical protein 2393 40.94 0 2875698..2876459 - 253 114563581 - Sfri_2411 - hypothetical protein 2394 42.13 0 2876459..2877322 - 287 114563582 - Sfri_2412 - hypothetical protein 2395 46.39 +1 2877423..2877851 - 142 114563583 - Sfri_2413 - hypothetical protein 2396 43.49 0 2878179..2879123 + 314 114563584 - Sfri_2414 - dihydrouridine synthase, DuS 2397 38.44 -1 2879456..2879827 + 123 114563585 - Sfri_2415 - transcriptional regulators, TraR/DksA family protein 2398 42.78 0 2879956..2882484 - 842 114563586 - Sfri_2416 - TonB-dependent receptor 2399 43.23 0 2883277..2883771 - 164 114563587 - Sfri_2417 - nucleoside-diphosphate kinase 2400 42.59 0 2883874..2884770 - 298 114563588 - Sfri_2418 - alpha-L-glutamate ligases, RimK family protein 2401 42.26 0 2884943..2885278 - 111 114563589 - Sfri_2419 - ferredoxin, 2Fe-2S type, ISC system 2402 44.46 0 2885287..2887146 - 619 114563590 hscA Sfri_2420 - chaperone protein HscA 2403 41.14 0 2887219..2887743 - 174 114563591 hscB Sfri_2421 - co-chaperone HscB 2404 42.59 0 2887800..2888123 - 107 114563592 - Sfri_2422 - iron-sulfur cluster assembly protein IscA 2405 39.32 0 2888138..2888521 - 127 114563593 - Sfri_2423 - scaffold protein 2406 42.80 0 2888594..2889808 - 404 114563594 - Sfri_2424 - cysteine desulfurase IscS 2407 41.77 0 2889890..2890351 - 153 114563595 - Sfri_2425 - transcriptional regulator, BadM/Rrf2 family protein 2408 45.50 +1 2890584..2891405 - 273 114563596 - Sfri_2426 - serine O-acetyltransferase 2409 42.05 0 2891424..2892146 - 240 114563597 - Sfri_2427 - RNA methyltransferase 2410 42.91 0 2892297..2893100 + 267 114563598 - Sfri_2428 - inositol monophosphatase 2411 38.13 -1 2893359..2893775 + 138 114563599 - Sfri_2429 - phosphate-starvation-inducible E 2412 41.58 0 2894035..2894337 + 100 114563600 - Sfri_2430 - type IV pilus assembly PilZ 2413 43.35 0 2894440..2895108 + 222 114563601 - Sfri_2431 - hypothetical protein 2414 37.04 -1 2895095..2895445 + 116 114563602 - Sfri_2432 - RepA domain-containing protein 2415 40.85 0 2895846..2897522 + 558 114563603 - Sfri_2433 - signal transduction histidine kinase, LytS 2416 40.79 0 2897519..2898229 + 236 114563604 - Sfri_2434 - putative two-component response-regulatory protein YehT 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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