version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2258 41.03 0 2720265..2721134 - 289 114563446 - Sfri_2275 - transcriptional regulator, LysR family protein 2259 41.67 0 2721375..2721578 + 67 114563447 - Sfri_2276 - hypothetical protein 2260 42.10 0 2721582..2722619 + 345 114563448 - Sfri_2277 - oxidoreductase domain-containing protein 2261 44.44 0 2722581..2722985 - 134 114563449 - Sfri_2278 - NUDIX hydrolase 2262 43.22 0 2723034..2723468 - 144 114563450 - Sfri_2279 - hypothetical protein 2263 46.54 +1 2723994..2724470 + 158 114563451 - Sfri_2280 - hypothetical protein 2264 47.13 +1 2724467..2724988 + 173 114563452 - Sfri_2281 - cation antiporter 2265 42.20 0 2724991..2725272 + 93 114563453 - Sfri_2282 - multiple resistance and pH regulation protein F 2266 48.89 +2 2725265..2725624 + 119 114563454 - Sfri_2283 - monovalent cation/proton antiporter, MnhG/PhaG subunit 2267 49.85 +2 2725621..2726601 + 326 114563455 - Sfri_2284 - putative monovalent cation/H+ antiporter subunit B 2268 40.28 0 2726598..2726957 + 119 114563456 - Sfri_2285 - NADH-ubiquinone oxidoreductase, chain 4L 2269 47.41 +1 2726963..2728276 + 437 114563457 - Sfri_2286 - NADH dehydrogenase (quinone) 2270 44.76 0 2728245..2728454 + 69 114563458 - Sfri_2287 - putative multicomponent Na+:H+ antiporter subunit D 2271 44.51 0 2728451..2729917 + 488 114563459 - Sfri_2288 - NADH dehydrogenase (quinone) 2272 41.27 0 2729919..2730233 + 104 114563460 - Sfri_2289 - hypothetical protein 2273 45.44 +1 2730223..2731932 + 569 114563461 - Sfri_2290 - putative monovalent cation/H+ antiporter subunit D 2274 46.66 +1 2732799..2735417 - 872 114563462 - Sfri_2291 - ATPase, P-type (transporting), HAD superfamily, subfamily IC 2275 46.67 +1 2735419..2736003 - 194 114563463 - Sfri_2292 - hypothetical protein 2276 38.52 -1 2736010..2736279 - 89 114563464 - Sfri_2293 - hypothetical protein 2277 41.43 0 2736878..2737297 - 139 114563465 - Sfri_2294 - transcriptional regulator, MarR family protein 2278 40.98 0 2737576..2738046 - 156 114563466 - Sfri_2295 - hypothetical protein 2279 44.04 0 2738056..2741127 - 1023 114563467 - Sfri_2296 - FAD linked oxidase domain-containing protein 2280 43.51 0 2741234..2743660 - 808 114563468 - Sfri_2297 - phosphoenolpyruvate synthase 2281 39.61 0 2743730..2744542 + 270 114563469 - Sfri_2298 - hypothetical protein 2282 43.19 0 2744749..2745813 + 354 114563470 - Sfri_2299 - phospho-2-dehydro-3-deoxyheptonate aldolase 2283 41.01 0 2745958..2747181 - 407 114563471 - Sfri_2300 - metal dependent phosphohydrolase 2284 39.61 0 2747574..2748290 + 238 114563472 - Sfri_2301 - hypothetical protein 2285 40.68 0 2748295..2748852 + 185 114563473 - Sfri_2302 - putative phosphohistidine phosphatase, SixA 2286 35.58 -2 2748934..2749200 + 88 114563474 - Sfri_2303 - transcriptional antiterminator, Rof 2287 42.24 0 2749369..2749806 + 145 114563475 - Sfri_2304 - thioesterase superfamily protein 2288 43.14 0 2749990..2750652 + 220 114563476 - Sfri_2305 - two component transcriptional regulator, LuxR family protein 2289 42.11 0 2750652..2751266 + 204 114563477 - Sfri_2306 - hypothetical protein 2290 43.50 0 2751550..2752395 + 281 114563478 - Sfri_2307 - aldose 1-epimerase 2291 36.78 -1 2752590..2752763 - 57 114563479 - Sfri_2308 - hypothetical protein 2292 42.18 0 2752962..2754680 - 572 114563480 ushA Sfri_2309 - bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 2293 42.15 0 2754992..2755660 - 222 114563481 - Sfri_2310 - carboxylesterase 2294 43.42 0 2755791..2756018 - 75 114563482 - Sfri_2311 - hypothetical protein 2295 45.34 +1 2756118..2756600 - 160 114563483 - Sfri_2312 - peptidylprolyl isomerase, FKBP-type 2296 42.71 0 2756685..2757932 - 415 114563484 - Sfri_2313 - lytic murein transglycosylase 2297 38.73 -1 2758384..2758791 + 135 114563485 - Sfri_2314 - hypothetical protein 2298 40.15 0 2758856..2759515 + 219 114563486 - Sfri_2315 - hypothetical protein 2299 39.17 0 2759541..2760482 - 313 114563487 - Sfri_2316 - response regulator receiver modulated CheW protein 2300 38.07 -1 2760998..2761588 + 196 114563488 - Sfri_2317 - peptidase S16, lon domain-containing protein 2301 39.22 0 2761726..2762388 + 220 114563489 - Sfri_2318 - ECF subfamily RNA polymerase sigma-24 factor 2302 42.21 0 2762381..2763067 + 228 114563490 - Sfri_2319 - anti-ECFsigma factor, ChrR 2303 32.76 -2 2763749..2763922 + 57 114563491 - Sfri_2320 - hypothetical protein 2304 37.45 -1 2764165..2765136 - 323 114563492 - Sfri_2321 - hypothetical protein 2305 42.03 0 2765334..2765747 + 137 114563493 - Sfri_2322 - hypothetical protein 2306 39.74 0 2765904..2766371 + 155 114563494 - Sfri_2323 - hypothetical protein 2307 43.47 0 2766553..2767341 - 262 114563495 - Sfri_2324 - hypothetical protein 2308 41.83 0 2767518..2768447 - 309 114563496 - Sfri_2325 - transcriptional regulator, LysR family protein 2309 41.52 0 2768667..2769827 + 386 114563497 - Sfri_2326 - homogentisate 1,2-dioxygenase 2310 39.77 0 2769898..2770938 + 346 114563498 - Sfri_2327 - 4-hydroxyphenylpyruvate dioxygenase 2311 45.63 +1 2771042..2771659 + 205 114563499 - Sfri_2328 - lysine exporter protein LysE/YggA 2312 39.69 0 2771701..2772879 - 392 114563500 - Sfri_2329 - hypothetical protein 2313 43.49 0 2772992..2774743 + 583 114563501 - Sfri_2330 - gamma-glutamyltransferase 2314 40.20 0 2775201..2776817 + 538 114563502 - Sfri_2331 - methyl-accepting chemotaxis sensory transducer 2315 41.67 0 2776896..2778119 + 407 114563503 - Sfri_2332 - hypothetical protein 2316 40.15 0 2778131..2778526 + 131 114563504 - Sfri_2333 - hypothetical protein 2317 40.16 0 2778764..2780947 + 727 114563505 - Sfri_2334 - peptidyl-dipeptidase Dcp 2318 41.10 0 2781380..2783479 + 699 114563506 cpdB Sfri_2335 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 2319 41.77 0 2783606..2784091 - 161 114563507 - Sfri_2336 - hypothetical protein 2320 45.37 +1 2784084..2784806 - 240 114563508 - Sfri_2337 - NAD-dependent deacetylase 2321 39.41 0 2785087..2785596 + 169 114563509 fur Sfri_2338 - ferric uptake regulator 2322 41.10 0 2785678..2786604 - 308 114563510 - Sfri_2339 - auxin efflux carrier 2323 44.79 0 2786728..2787600 - 290 114563511 - Sfri_2340 - succinyl-CoA synthetase, alpha subunit 2324 44.04 0 2787600..2788766 - 388 114563512 sucC Sfri_2341 - succinyl-CoA synthetase subunit beta 2325 43.44 0 2788842..2790038 - 398 114563513 - Sfri_2342 - 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2326 44.17 0 2790067..2792889 - 940 114563514 kgd Sfri_2343 - alpha-ketoglutarate decarboxylase 2327 39.97 0 2793092..2793799 - 235 114563515 sdhB Sfri_2344 - succinate dehydrogenase iron-sulfur subunit 2328 43.41 0 2793816..2795582 - 588 114563516 sdhA Sfri_2345 - succinate dehydrogenase flavoprotein subunit 2329 39.37 0 2795583..2795930 - 115 114563517 - Sfri_2346 - succinate dehydrogenase, cytochrome b subunit 2330 44.44 0 2795924..2796319 - 131 114563518 - Sfri_2347 - succinate dehydrogenase, cytochrome b subunit 2331 42.35 0 2796729..2798015 + 428 114563519 gltA Sfri_2348 - type II citrate synthase 2332 35.84 -2 2798694..2799131 - 145 114563520 - Sfri_2349 - hypothetical protein 2333 38.08 -1 2799118..2799960 - 280 114563521 - Sfri_2350 - hypothetical protein 2334 34.97 -2 2800994..2801359 - 121 114563522 - Sfri_2352 - hypothetical protein 2335 35.29 -2 2801437..2801793 - 118 114563523 - Sfri_2353 - hypothetical protein 2336 33.33 -2 2801936..2802295 - 119 114563524 - Sfri_2354 - hypothetical protein 2337 42.72 0 2802296..2806780 - 1494 114563525 - Sfri_2355 - YD repeat-containing protein 2338 41.06 0 2806787..2807731 - 314 114563526 - Sfri_2356 - hypothetical protein 2339 38.42 -1 2807728..2808828 - 366 114563527 - Sfri_2357 - hypothetical protein 2340 48.80 +2 2808850..2809140 - 96 114563528 - Sfri_2358 - PAAR repeat-containing protein 2341 43.22 0 2809183..2809536 - 117 114563529 - Sfri_2359 - hypothetical protein 2342 40.28 0 2809539..2811395 - 618 114563530 - Sfri_2360 - Rhs element Vgr protein 2343 39.38 0 2811466..2811945 - 159 114563531 - Sfri_2361 - hypothetical protein 2344 39.39 0 2812315..2814921 - 868 114563532 - Sfri_2362 - ATPase 2345 41.07 0 2814941..2815948 - 335 114563533 - Sfri_2363 - hypothetical protein 2346 39.62 0 2815945..2817774 - 609 114563534 - Sfri_2364 - hypothetical protein 2347 38.71 -1 2817771..2818235 - 154 114563535 - Sfri_2365 - hypothetical protein 2348 39.16 0 2818268..2819056 - 262 114563536 - Sfri_2366 - virulence protein, SciE type 2349 39.71 0 2819071..2820606 - 511 114563537 - Sfri_2367 - hypothetical protein 2350 41.97 0 2820658..2822151 - 497 114563538 - Sfri_2368 - hypothetical protein 2351 38.72 -1 2822151..2822651 - 166 114563539 - Sfri_2369 - hypothetical protein 2352 40.20 0 2822693..2823799 - 368 114563540 - Sfri_2370 - ImpA domain-containing protein 2353 38.67 -1 2824086..2824853 - 255 114563541 - Sfri_2371 - protein serine/threonine phosphatase 2354 41.53 0 2824844..2825575 - 243 114563542 - Sfri_2372 - hypothetical protein 2355 37.90 -1 2825557..2829105 - 1182 114563543 - Sfri_2373 - ImcF domain-containing protein 2356 40.16 0 2829129..2830418 - 429 114563544 - Sfri_2374 - OmpA/MotB domain-containing protein 2357 40.63 0 2830443..2831771 - 442 114563545 - Sfri_2375 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0