version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2153 42.48 0 2592524..2594545 - 673 114563341 - Sfri_2170 - excinuclease ABC subunit B 2154 39.07 0 2596956..2598854 + 632 114563342 - Sfri_2171 - diguanylate cyclase/phosphodiesterase 2155 41.63 0 2598910..2599572 + 220 114563343 - Sfri_2172 - Na(+)-translocating NADH-quinone reductase subunit E 2156 42.78 0 2599572..2600153 + 193 114563344 - Sfri_2173 - electron transport complex protein RnfB 2157 44.79 0 2600147..2602687 + 846 114563345 - Sfri_2174 - electron transport complex protein RnfC 2158 43.68 0 2602690..2603742 + 350 114563346 - Sfri_2175 - electron transport complex, RnfABCDGE type, D subunit 2159 41.20 0 2603745..2604392 + 215 114563347 - Sfri_2176 - electron transport complex, RnfABCDGE type, G subunit 2160 42.96 0 2604385..2605080 + 231 114563348 - Sfri_2177 - SoxR-reducing system protein RsxE 2161 40.81 0 2605139..2605780 + 213 114563349 - Sfri_2178 - endonuclease III 2162 45.01 0 2606159..2606569 + 136 114563350 - Sfri_2179 - lactoylglutathione lyase 2163 42.93 0 2606748..2607758 - 336 114563351 ruvB Sfri_2180 - Holliday junction DNA helicase B 2164 41.26 0 2607789..2608406 - 205 114563352 - Sfri_2181 - Holliday junction DNA helicase RuvA 2165 44.44 0 2608403..2608924 - 173 114563353 - Sfri_2182 - crossover junction endodeoxyribonuclease RuvC 2166 42.90 0 2608932..2609684 - 250 114563354 - Sfri_2183 - hypothetical protein 2167 41.16 0 2609808..2611583 - 591 114563355 aspS Sfri_2184 - aspartyl-tRNA synthetase 2168 38.75 -1 2611755..2614580 - 941 114563356 - Sfri_2185 - diguanylate cyclase 2169 39.62 0 2614968..2615699 + 243 114563357 - Sfri_2186 - putative methyltransferase 2170 40.89 0 2615696..2616688 + 330 114563358 - Sfri_2187 - putative methyltransferase 2171 41.76 0 2616714..2617484 + 256 114563359 - Sfri_2188 - hypothetical protein 2172 40.03 0 2617493..2619001 + 502 114563360 - Sfri_2189 - gonadoliberin III-related protein 2173 42.22 0 2619001..2619957 + 318 114563361 - Sfri_2190 - alpha-L-glutamate ligase-like protein 2174 39.38 0 2619920..2621722 + 600 114563362 - Sfri_2191 - hypothetical protein 2175 37.67 -1 2621700..2622830 + 376 114563363 - Sfri_2192 - hypothetical protein 2176 40.89 0 2622937..2623836 + 299 114563364 - Sfri_2193 - transcriptional regulator, LysR family protein 2177 41.36 0 2624398..2625681 - 427 114563365 - Sfri_2194 - hypothetical protein 2178 44.79 0 2625684..2625971 - 95 114563366 - Sfri_2195 - methyl-accepting chemotaxis protein 2179 42.92 0 2626048..2627163 - 371 114563367 thiH Sfri_2196 - thiamine biosynthesis protein ThiH 2180 45.68 +1 2627165..2627974 - 269 114563368 thiG Sfri_2197 - thiazole synthase 2181 46.93 +1 2627977..2628204 - 75 114563369 - Sfri_2198 - thiamine biosynthesis protein ThiS 2182 43.00 0 2628191..2628997 - 268 114563370 - Sfri_2199 - UBA/THIF-type NAD/FAD binding protein 2183 44.76 0 2628994..2630673 - 559 114563371 - Sfri_2200 - thiamine-phosphate pyrophosphorylase 2184 45.63 +1 2630679..2632679 - 666 114563372 - Sfri_2201 - thiamine biosynthesis protein ThiC 2185 43.22 0 2633243..2635387 + 714 114563373 - Sfri_2202 - TonB-dependent receptor 2186 42.15 0 2636489..2637826 - 445 114563374 - Sfri_2203 - hypothetical protein 2187 42.11 0 2637837..2638565 - 242 114563375 - Sfri_2204 - DNA polymerase III, epsilon subunit 2188 41.14 0 2638643..2639116 + 157 114563376 - Sfri_2205 - ribonuclease H 2189 41.67 0 2639330..2640109 - 259 114563377 - Sfri_2206 - methyltransferase type 11 2190 39.36 0 2640286..2641065 + 259 114563378 - Sfri_2207 - hydroxyacylglutathione hydrolase 2191 40.54 0 2641216..2642769 + 517 114563379 - Sfri_2208 - lytic transglycosylase, catalytic 2192 40.03 0 2643293..2645113 - 606 114563380 - Sfri_2209 - AsmA family protein 2193 40.00 0 2645139..2645633 - 164 114563381 - Sfri_2210 - ribonuclease activity regulator protein RraA 2194 33.97 -2 2645827..2646141 + 104 114563382 - Sfri_2211 - hypothetical protein 2195 40.06 0 2646401..2648050 - 549 114563383 - Sfri_2212 - methyl-accepting chemotaxis sensory transducer 2196 41.39 0 2648356..2649336 - 326 114563384 - Sfri_2213 - transcriptional regulator, LysR family protein 2197 44.80 0 2649457..2650677 + 406 114563385 - Sfri_2214 - acyl-CoA dehydrogenase domain-containing protein 2198 42.48 0 2650689..2651519 + 276 114563386 - Sfri_2215 - short chain dehydrogenase 2199 42.70 0 2651525..2652592 + 355 114563387 - Sfri_2216 - aminoglycoside phosphotransferase 2200 41.38 0 2652595..2653302 + 235 114563388 - Sfri_2217 - phosphoglycerate mutase 2201 42.00 0 2653387..2654136 + 249 114563389 - Sfri_2218 - short chain dehydrogenase 2202 38.39 -1 2654221..2654754 - 177 114563390 - Sfri_2219 - hypothetical protein 2203 40.69 0 2654923..2655942 - 339 114563391 - Sfri_2220 - dihydroorotate dehydrogenase 2 2204 41.17 0 2656004..2660851 - 1615 114563392 - Sfri_2221 - NAD-glutamate dehydrogenase 2205 40.18 0 2661180..2663486 - 768 114563393 - Sfri_2222 - hypothetical protein 2206 41.05 0 2663536..2664546 - 336 114563394 - Sfri_2223 - BNR repeat-containing protein 2207 41.17 0 2664605..2665969 - 454 114563395 - Sfri_2224 - hypothetical protein 2208 42.51 0 2665983..2668031 - 682 114563396 - Sfri_2225 - hypothetical protein 2209 35.62 -2 2668347..2668565 - 72 114563397 - Sfri_2226 - hypothetical protein 2210 39.58 0 2668653..2671214 - 853 114563398 - Sfri_2227 - aminopeptidase N 2211 41.67 0 2671345..2673396 - 683 114563399 - Sfri_2228 - carboxy-terminal protease 2212 40.20 0 2673418..2674029 - 203 114563400 - Sfri_2229 - putative solute/DNA competence effector 2213 39.78 0 2674307..2674771 - 154 114563401 - Sfri_2230 - putative GAF sensor protein 2214 38.44 -1 2674815..2675108 - 97 114563402 - Sfri_2231 - YebG family protein 2215 39.55 0 2675322..2675948 + 208 114563403 - Sfri_2232 - paraquat-inducible protein A 2216 39.50 0 2675941..2676654 + 237 114563404 - Sfri_2233 - paraquat-inducible protein A 2217 41.08 0 2676641..2679286 + 881 114563405 - Sfri_2234 - hypothetical protein 2218 44.15 0 2679381..2680619 - 412 114563406 - Sfri_2235 - nucleoside recognition domain-containing protein 2219 40.82 0 2680732..2682186 + 484 114563407 yebU Sfri_2236 - rRNA (cytosine-C(5)-)-methyltransferase RsmF 2220 41.06 0 2683056..2683844 - 262 114563408 - Sfri_2237 - hydrolase, TatD family protein 2221 39.76 0 2683900..2684226 - 108 114563409 - Sfri_2238 - type IV pilus biogenesis protein pilZ 2222 43.60 0 2684278..2685261 - 327 114563410 - Sfri_2239 - DNA polymerase III, delta prime subunit 2223 43.98 0 2685290..2685937 - 215 114563411 - Sfri_2240 - dTMP kinase 2224 39.35 0 2685934..2686947 - 337 114563412 - Sfri_2241 - aminodeoxychorismate lyase 2225 43.17 0 2686944..2687777 - 277 114563413 - Sfri_2242 - aminotransferase, class IV 2226 43.25 0 2687777..2688361 - 194 114563414 dcd Sfri_2243 - deoxycytidine triphosphate deaminase 2227 38.34 -1 2688385..2689023 - 212 114563415 - Sfri_2244 - uridine kinase 2228 43.10 0 2689033..2690148 - 371 114563416 - Sfri_2245 - ATP-binding protein, Mrp/Nbp35 family protein 2229 41.18 0 2690305..2692356 + 683 114563417 metG Sfri_2246 - methionyl-tRNA synthetase 2230 41.02 0 2692494..2694419 - 641 114563418 - Sfri_2247 - potassium efflux system protein 2231 41.63 0 2694515..2695297 - 260 114563419 - Sfri_2248 - hypothetical protein 2232 44.08 0 2695694..2696056 + 120 114563420 - Sfri_2249 - hypothetical protein 2233 42.83 0 2696180..2696674 - 164 114563421 - Sfri_2250 - 17 kDa surface antigen 2234 43.93 0 2696721..2697428 + 235 114563422 aat Sfri_2251 - leucyl/phenylalanyl-tRNA--protein transferase 2235 38.47 -1 2697418..2698137 + 239 114563423 - Sfri_2252 - arginyl-tRNA-protein transferase 2236 44.29 0 2698217..2698435 + 72 114563424 - Sfri_2253 - translation initiation factor IF-1 2237 43.65 0 2698834..2701092 - 752 114563425 - Sfri_2254 - ATP-dependent Clp protease, ATP-binding subunit clpA 2238 35.92 -1 2701136..2701444 - 102 114563426 - Sfri_2255 - ATP-dependent Clp protease adaptor protein ClpS 2239 43.96 0 2701641..2701847 + 68 114563427 - Sfri_2256 - cold-shock DNA-binding domain-containing protein 2240 42.90 0 2702003..2704228 - 741 114563428 - Sfri_2257 - isocitrate dehydrogenase, NADP-dependent 2241 43.50 0 2704610..2705317 + 235 114563429 - Sfri_2258 - pseudouridine synthase, Rsu 2242 41.77 0 2705350..2705823 + 157 114563430 - Sfri_2259 - NUDIX hydrolase 2243 43.97 0 2706082..2707200 + 372 114563431 trmU Sfri_2260 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2244 44.08 0 2707204..2707836 + 210 114563432 - Sfri_2261 - hypothetical protein 2245 42.52 0 2707876..2709246 + 456 114563433 - Sfri_2262 - adenylosuccinate lyase 2246 44.01 0 2709340..2710482 + 380 114563434 - Sfri_2263 - cupin 4 family protein 2247 42.63 0 2710628..2711068 - 146 114563435 - Sfri_2264 - hypothetical protein 2248 44.28 0 2711353..2712384 + 343 114563436 - Sfri_2265 - Glu/Leu/Phe/Val dehydrogenase, dimerisation region 2249 41.20 0 2712645..2713547 + 300 114563437 - Sfri_2266 - metallophosphoesterase 2250 41.15 0 2713561..2715300 + 579 114563438 - Sfri_2267 - phospholipid/glycerol acyltransferase 2251 41.18 0 2715407..2715865 + 152 114563439 - Sfri_2268 - signal transduction protein 2252 35.65 -2 2716224..2716568 + 114 114563440 - Sfri_2269 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0