version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1912 41.81 0 2286144..2289329 - 1061 114563100 - Sfri_1929 - acriflavin resistance protein 1913 42.93 0 2289335..2290522 - 395 114563101 - Sfri_1930 - RND family efflux transporter MFP subunit 1914 44.39 0 2290702..2291262 + 186 114563102 - Sfri_1931 - GCN5-related N-acetyltransferase 1915 42.14 0 2291327..2292280 - 317 114563103 - Sfri_1932 - thioredoxin reductase 1916 42.92 0 2292482..2292961 - 159 114563104 - Sfri_1933 - peptide methionine sulfoxide reductase 1917 42.66 0 2293183..2294211 + 342 114563105 - Sfri_1934 - succinylglutamate desuccinylase 1918 44.70 0 2294368..2295546 + 392 114563106 - Sfri_1935 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) 1919 46.11 +1 2295550..2296527 + 325 114563107 - Sfri_1936 - transketolase, central region 1920 44.67 0 2296537..2298159 + 540 114563108 - Sfri_1937 - dihydrolipoamide acetyltransferase 1921 44.94 0 2298262..2299329 + 355 114563109 - Sfri_1938 - quinolinate synthetase 1922 39.91 0 2299505..2301421 - 638 114563110 - Sfri_1939 - methyl-accepting chemotaxis sensory transducer 1923 40.75 0 2302010..2303020 - 336 114563111 - Sfri_1940 - glyceraldehyde-3-phosphate dehydrogenase, type I 1924 38.99 0 2303251..2304081 - 276 114563112 - Sfri_1941 - hypothetical protein 1925 40.71 0 2304282..2305718 + 478 114563113 - Sfri_1942 - glyceraldehyde-3-phosphate dehydrogenase 1926 38.27 -1 2306879..2307364 - 161 114563114 - Sfri_1943 - transcriptional regulator, MarR family protein 1927 42.80 0 2307490..2308197 - 235 114563115 - Sfri_1944 - hypothetical protein 1928 37.93 -1 2308225..2309442 - 405 114563116 - Sfri_1945 - putative transporter, BCCT family protein 1929 43.02 0 2309678..2311360 - 560 114563117 - Sfri_1946 - choline dehydrogenase 1930 44.44 0 2311375..2312841 - 488 114563118 - Sfri_1947 - betaine aldehyde dehydrogenase 1931 41.37 0 2312841..2313437 - 198 114563119 - Sfri_1948 - transcriptional regulator BetI 1932 43.96 0 2314169..2314375 + 68 114563120 - Sfri_1949 - hypothetical protein 1933 40.91 0 2315241..2315834 + 197 114563121 - Sfri_1950 - phage integrase family protein 1934 47.37 +1 2315997..2317100 + 367 114563122 - Sfri_1951 - helix-turn-helix domain-containing protein 1935 44.44 0 2317081..2317575 + 164 114563123 - Sfri_1952 - hypothetical protein 1936 43.38 0 2317631..2319202 + 523 114563124 - Sfri_1953 - type I restriction-modification system, M subunit 1937 41.52 0 2319199..2320419 + 406 114563125 - Sfri_1954 - restriction modification system DNA specificity subunit 1938 47.80 +1 2320508..2321509 + 333 114563126 - Sfri_1955 - filamentation induced by cAMP protein Fic 1939 44.06 0 2321573..2324686 + 1037 114563127 - Sfri_1956 - type I site-specific deoxyribonuclease, HsdR family protein 1940 33.41 -2 2325190..2326515 + 441 114563128 - Sfri_1957 - hypothetical protein 1941 43.57 0 2326702..2328771 - 689 114563129 - Sfri_1958 - endothelin-converting protein 1 1942 44.00 0 2329255..2329854 - 199 114563130 - Sfri_1959 - hypothetical protein 1943 42.48 0 2329859..2330842 - 327 114563131 - Sfri_1960 - hypothetical protein 1944 46.14 +1 2330839..2331603 - 254 114563132 - Sfri_1961 - ABC transporter related 1945 46.00 +1 2331606..2332718 - 370 114563133 - Sfri_1962 - hypothetical protein 1946 45.41 +1 2333041..2333454 + 137 114563134 - Sfri_1963 - putative prophage repressor 1947 43.99 0 2333461..2334717 + 418 114563135 - Sfri_1964 - DNA-directed DNA polymerase 1948 39.95 0 2334858..2335235 + 125 114563136 - Sfri_1965 - hypothetical protein 1949 35.40 -2 2335339..2335773 + 144 114563137 - Sfri_1966 - hypothetical protein 1950 36.81 -1 2335886..2336317 + 143 114563138 - Sfri_1967 - hypothetical protein 1951 43.60 0 2336453..2336968 + 171 114563139 - Sfri_1968 - hypothetical protein 1952 45.85 +1 2336965..2338938 + 657 114563140 - Sfri_1969 - copper-resistance protein, CopA family protein 1953 44.12 0 2338950..2339663 + 237 114563141 - Sfri_1970 - copper resistance B precursor 1954 46.10 +1 2339779..2340201 + 140 114563142 - Sfri_1971 - copper resistance protein CopC 1955 40.93 0 2340216..2341136 + 306 114563143 - Sfri_1972 - copper resistance D domain-containing protein 1956 42.57 0 2341212..2341655 + 147 114563144 - Sfri_1973 - putative orphan protein 1957 40.18 0 2342040..2342258 + 72 114563145 - Sfri_1974 - putative DNA-binding protein 1958 42.26 0 2342255..2342803 + 182 114563146 - Sfri_1975 - hypothetical protein 1959 41.84 0 2342841..2344157 - 438 114563147 - Sfri_1976 - sigma54 specific transcriptional regulator, Fis family protein 1960 43.57 0 2344469..2345113 + 214 114563148 - Sfri_1977 - hypothetical protein 1961 40.83 0 2345391..2346257 + 288 114563149 - Sfri_1978 - beta-lactamase domain-containing protein 1962 42.96 0 2346376..2346780 - 134 114563150 - Sfri_1979 - rhodanese domain-containing protein 1963 42.23 0 2346796..2347548 - 250 114563151 - Sfri_1980 - hypothetical protein 1964 41.95 0 2347563..2348432 - 289 114563152 - Sfri_1981 - beta-lactamase domain-containing protein 1965 43.93 0 2348489..2349130 - 213 114563153 - Sfri_1982 - peroxidase 1966 43.00 0 2349635..2350555 + 306 114563154 - Sfri_1983 - transcriptional regulator, LysR family protein 1967 44.44 0 2350740..2351702 - 320 114563155 - Sfri_1984 - radical SAM domain-containing protein 1968 42.57 0 2351695..2353263 - 522 114563156 - Sfri_1985 - hypothetical protein 1969 35.17 -2 2353623..2354546 - 307 114563157 - Sfri_1986 - diguanylate cyclase 1970 37.05 -1 2354543..2355349 - 268 114563158 - Sfri_1987 - alpha/beta hydrolase fold 1971 42.81 0 2355843..2357267 + 474 114563159 - Sfri_1988 - lytic transglycosylase, catalytic 1972 41.60 0 2357583..2358332 + 249 114563160 - Sfri_1989 - hypothetical protein 1973 40.50 0 2358532..2359257 + 241 114563161 - Sfri_1990 - DNA-binding transcriptional regulator TorR 1974 40.88 0 2359247..2360320 - 357 114563162 - Sfri_1991 - periplasmic sensory protein associated with the TorRS two-component regulatory system 1975 41.90 0 2360439..2363438 + 999 114563163 - Sfri_1992 - multi-sensor hybrid histidine kinase 1976 42.16 0 2363578..2364234 - 218 114563164 torD Sfri_1993 - chaperone protein TorD 1977 44.00 0 2364320..2366812 - 830 114563165 - Sfri_1994 - trimethylamine-N-oxide reductase TorA 1978 43.00 0 2366825..2368003 - 392 114563166 - Sfri_1995 - trimethylamine-N-oxide reductase c-type cytochrome TorC 1979 39.18 0 2368046..2368216 - 56 114563167 - Sfri_1996 - periplasmic nitrate reductase NapE 1980 36.53 -1 2368615..2369208 - 197 114563168 - Sfri_1997 - two component transcriptional regulator, LuxR family protein 1981 40.35 0 2369410..2371263 + 617 114563169 - Sfri_1998 - histidine kinase 1982 44.24 0 2371517..2373799 + 760 114563170 - Sfri_1999 - twin-arginine translocation pathway signal 1983 43.63 0 2373828..2374400 + 190 114563171 - Sfri_2000 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1984 41.93 0 2374397..2375338 + 313 114563172 - Sfri_2001 - polysulphide reductase, NrfD 1985 33.72 -2 2376415..2376675 + 86 114563173 - Sfri_2002 - hypothetical protein 1986 39.61 0 2377096..2377509 + 137 114563174 - Sfri_2003 - GreA/GreB family elongation factor 1987 41.48 0 2378528..2378797 + 89 114563175 - Sfri_2004 - hypothetical protein 1988 35.74 -2 2379032..2379571 + 179 114563176 - Sfri_2005 - hypothetical protein 1989 43.78 0 2379907..2380155 + 82 114563177 - Sfri_2006 - hypothetical protein 1990 42.13 0 2380574..2381881 - 435 114563178 - Sfri_2007 - phage integrase family protein 1991 39.58 0 2381961..2382248 - 95 114563179 - Sfri_2008 - hypothetical protein 1992 37.09 -1 2382688..2383140 - 150 114563180 - Sfri_2009 - hypothetical protein 1993 43.49 0 2383411..2384838 + 475 114563181 - Sfri_2010 - cytochrome c oxidase, cbb3-type, subunit I 1994 43.22 0 2384851..2385477 + 208 114563182 - Sfri_2011 - cytochrome c oxidase, cbb3-type, subunit II 1995 36.72 -1 2385487..2385663 + 58 114563183 - Sfri_2012 - Cbb3-type cytochrome oxidase component 1996 43.08 0 2385663..2386637 + 324 114563184 - Sfri_2013 - cytochrome c oxidase, cbb3-type, subunit III 1997 39.17 0 2386754..2387233 + 159 114563185 - Sfri_2014 - hypothetical protein 1998 42.02 0 2387291..2389684 + 797 114563186 - Sfri_2015 - heavy metal translocating P-type ATPase 1999 37.78 -1 2389681..2389995 + 104 114563187 - Sfri_2016 - cytochrome oxidase maturation protein, cbb3-type 2000 42.90 0 2390001..2390690 + 229 114563188 - Sfri_2017 - hypothetical protein 2001 41.90 0 2391013..2391771 + 252 114563189 - Sfri_2018 - fumarate/nitrate reduction transcriptional regulator 2002 38.60 -1 2391870..2392799 + 309 114563190 - Sfri_2019 - universal stress protein UspE 2003 39.08 0 2392890..2393828 + 312 114563191 - Sfri_2020 - PP-loop domain-containing protein 2004 36.39 -1 2393909..2394562 - 217 114563192 - Sfri_2021 - hypothetical protein 2005 37.24 -1 2394555..2395373 - 272 114563193 - Sfri_2022 - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 2006 40.44 0 2395643..2396599 + 318 114563194 - Sfri_2023 - hypothetical protein 2007 39.78 0 2396799..2397992 - 397 114563195 - Sfri_2024 - aromatic amino acid aminotransferase 2008 41.67 0 2398541..2398900 - 119 114563196 rplT Sfri_2025 - 50S ribosomal protein L20 2009 42.56 0 2398917..2399111 - 64 114563197 rpmI Sfri_2026 - 50S ribosomal protein L35 2010 41.67 0 2399195..2399530 - 111 114563198 - Sfri_2027 - initiation factor 3 2011 41.89 0 2399741..2401669 - 642 114563199 - Sfri_2028 - threonyl-tRNA synthetase 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.