IslandPathversion 1.0

IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.09 STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1912	 41.81	0	2286144..2289329	-	1061	114563100	-	Sfri_1929	-	acriflavin resistance protein
1913	 42.93	0	2289335..2290522	-	395	114563101	-	Sfri_1930	-	RND family efflux transporter MFP subunit
1914	 44.39	0	2290702..2291262	+	186	114563102	-	Sfri_1931	-	GCN5-related N-acetyltransferase
1915	 42.14	0	2291327..2292280	-	317	114563103	-	Sfri_1932	-	thioredoxin reductase
1916	 42.92	0	2292482..2292961	-	159	114563104	-	Sfri_1933	-	peptide methionine sulfoxide reductase
1917	 42.66	0	2293183..2294211	+	342	114563105	-	Sfri_1934	-	succinylglutamate desuccinylase
1918	 44.70	0	2294368..2295546	+	392	114563106	-	Sfri_1935	-	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
1919	 46.11	+1	2295550..2296527	+	325	114563107	-	Sfri_1936	-	transketolase, central region
1920	 44.67	0	2296537..2298159	+	540	114563108	-	Sfri_1937	-	dihydrolipoamide acetyltransferase
1921	 44.94	0	2298262..2299329	+	355	114563109	-	Sfri_1938	-	quinolinate synthetase
1922	 39.91	0	2299505..2301421	-	638	114563110	-	Sfri_1939	-	methyl-accepting chemotaxis sensory transducer
1923	 40.75	0	2302010..2303020	-	336	114563111	-	Sfri_1940	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1924	 38.99	0	2303251..2304081	-	276	114563112	-	Sfri_1941	-	hypothetical protein
1925	 40.71	0	2304282..2305718	+	478	114563113	-	Sfri_1942	-	glyceraldehyde-3-phosphate dehydrogenase
1926	 38.27	-1	2306879..2307364	-	161	114563114	-	Sfri_1943	-	transcriptional regulator, MarR family protein
1927	 42.80	0	2307490..2308197	-	235	114563115	-	Sfri_1944	-	hypothetical protein
1928	 37.93	-1	2308225..2309442	-	405	114563116	-	Sfri_1945	-	putative transporter, BCCT family protein
1929	 43.02	0	2309678..2311360	-	560	114563117	-	Sfri_1946	-	choline dehydrogenase
1930	 44.44	0	2311375..2312841	-	488	114563118	-	Sfri_1947	-	betaine aldehyde dehydrogenase
1931	 41.37	0	2312841..2313437	-	198	114563119	-	Sfri_1948	-	transcriptional regulator BetI
1932	 43.96	0	2314169..2314375	+	68	114563120	-	Sfri_1949	-	hypothetical protein
1933	 40.91	0	2315241..2315834	+	197	114563121	-	Sfri_1950	-	phage integrase family protein
1934	 47.37	+1	2315997..2317100	+	367	114563122	-	Sfri_1951	-	helix-turn-helix domain-containing protein
1935	 44.44	0	2317081..2317575	+	164	114563123	-	Sfri_1952	-	hypothetical protein
1936	 43.38	0	2317631..2319202	+	523	114563124	-	Sfri_1953	-	type I restriction-modification system, M subunit
1937	 41.52	0	2319199..2320419	+	406	114563125	-	Sfri_1954	-	restriction modification system DNA specificity subunit
1938	 47.80	+1	2320508..2321509	+	333	114563126	-	Sfri_1955	-	filamentation induced by cAMP protein Fic
1939	 44.06	0	2321573..2324686	+	1037	114563127	-	Sfri_1956	-	type I site-specific deoxyribonuclease, HsdR family protein
1940	 33.41	-2	2325190..2326515	+	441	114563128	-	Sfri_1957	-	hypothetical protein
1941	 43.57	0	2326702..2328771	-	689	114563129	-	Sfri_1958	-	endothelin-converting protein 1
1942	 44.00	0	2329255..2329854	-	199	114563130	-	Sfri_1959	-	hypothetical protein
1943	 42.48	0	2329859..2330842	-	327	114563131	-	Sfri_1960	-	hypothetical protein
1944	 46.14	+1	2330839..2331603	-	254	114563132	-	Sfri_1961	-	ABC transporter related
1945	 46.00	+1	2331606..2332718	-	370	114563133	-	Sfri_1962	-	hypothetical protein
1946	 45.41	+1	2333041..2333454	+	137	114563134	-	Sfri_1963	-	putative prophage repressor
1947	 43.99	0	2333461..2334717	+	418	114563135	-	Sfri_1964	-	DNA-directed DNA polymerase
1948	 39.95	0	2334858..2335235	+	125	114563136	-	Sfri_1965	-	hypothetical protein
1949	 35.40	-2	2335339..2335773	+	144	114563137	-	Sfri_1966	-	hypothetical protein
1950	 36.81	-1	2335886..2336317	+	143	114563138	-	Sfri_1967	-	hypothetical protein
1951	 43.60	0	2336453..2336968	+	171	114563139	-	Sfri_1968	-	hypothetical protein
1952	 45.85	+1	2336965..2338938	+	657	114563140	-	Sfri_1969	-	copper-resistance protein, CopA family protein
1953	 44.12	0	2338950..2339663	+	237	114563141	-	Sfri_1970	-	copper resistance B precursor
1954	 46.10	+1	2339779..2340201	+	140	114563142	-	Sfri_1971	-	copper resistance protein CopC
1955	 40.93	0	2340216..2341136	+	306	114563143	-	Sfri_1972	-	copper resistance D domain-containing protein
1956	 42.57	0	2341212..2341655	+	147	114563144	-	Sfri_1973	-	putative orphan protein
1957	 40.18	0	2342040..2342258	+	72	114563145	-	Sfri_1974	-	putative DNA-binding protein
1958	 42.26	0	2342255..2342803	+	182	114563146	-	Sfri_1975	-	hypothetical protein
1959	 41.84	0	2342841..2344157	-	438	114563147	-	Sfri_1976	-	sigma54 specific transcriptional regulator, Fis family protein
1960	 43.57	0	2344469..2345113	+	214	114563148	-	Sfri_1977	-	hypothetical protein
1961	 40.83	0	2345391..2346257	+	288	114563149	-	Sfri_1978	-	beta-lactamase domain-containing protein
1962	 42.96	0	2346376..2346780	-	134	114563150	-	Sfri_1979	-	rhodanese domain-containing protein
1963	 42.23	0	2346796..2347548	-	250	114563151	-	Sfri_1980	-	hypothetical protein
1964	 41.95	0	2347563..2348432	-	289	114563152	-	Sfri_1981	-	beta-lactamase domain-containing protein
1965	 43.93	0	2348489..2349130	-	213	114563153	-	Sfri_1982	-	peroxidase
1966	 43.00	0	2349635..2350555	+	306	114563154	-	Sfri_1983	-	transcriptional regulator, LysR family protein
1967	 44.44	0	2350740..2351702	-	320	114563155	-	Sfri_1984	-	radical SAM domain-containing protein
1968	 42.57	0	2351695..2353263	-	522	114563156	-	Sfri_1985	-	hypothetical protein
1969	 35.17	-2	2353623..2354546	-	307	114563157	-	Sfri_1986	-	diguanylate cyclase
1970	 37.05	-1	2354543..2355349	-	268	114563158	-	Sfri_1987	-	alpha/beta hydrolase fold
1971	 42.81	0	2355843..2357267	+	474	114563159	-	Sfri_1988	-	lytic transglycosylase, catalytic
1972	 41.60	0	2357583..2358332	+	249	114563160	-	Sfri_1989	-	hypothetical protein
1973	 40.50	0	2358532..2359257	+	241	114563161	-	Sfri_1990	-	DNA-binding transcriptional regulator TorR
1974	 40.88	0	2359247..2360320	-	357	114563162	-	Sfri_1991	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
1975	 41.90	0	2360439..2363438	+	999	114563163	-	Sfri_1992	-	multi-sensor hybrid histidine kinase
1976	 42.16	0	2363578..2364234	-	218	114563164	torD	Sfri_1993	-	chaperone protein TorD
1977	 44.00	0	2364320..2366812	-	830	114563165	-	Sfri_1994	-	trimethylamine-N-oxide reductase TorA
1978	 43.00	0	2366825..2368003	-	392	114563166	-	Sfri_1995	-	trimethylamine-N-oxide reductase c-type cytochrome TorC
1979	 39.18	0	2368046..2368216	-	56	114563167	-	Sfri_1996	-	periplasmic nitrate reductase NapE
1980	 36.53	-1	2368615..2369208	-	197	114563168	-	Sfri_1997	-	two component transcriptional regulator, LuxR family protein
1981	 40.35	0	2369410..2371263	+	617	114563169	-	Sfri_1998	-	histidine kinase
1982	 44.24	0	2371517..2373799	+	760	114563170	-	Sfri_1999	-	twin-arginine translocation pathway signal
1983	 43.63	0	2373828..2374400	+	190	114563171	-	Sfri_2000	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1984	 41.93	0	2374397..2375338	+	313	114563172	-	Sfri_2001	-	polysulphide reductase, NrfD
1985	 33.72	-2	2376415..2376675	+	86	114563173	-	Sfri_2002	-	hypothetical protein
1986	 39.61	0	2377096..2377509	+	137	114563174	-	Sfri_2003	-	GreA/GreB family elongation factor
1987	 41.48	0	2378528..2378797	+	89	114563175	-	Sfri_2004	-	hypothetical protein
1988	 35.74	-2	2379032..2379571	+	179	114563176	-	Sfri_2005	-	hypothetical protein
1989	 43.78	0	2379907..2380155	+	82	114563177	-	Sfri_2006	-	hypothetical protein
1990	 42.13	0	2380574..2381881	-	435	114563178	-	Sfri_2007	-	phage integrase family protein
1991	 39.58	0	2381961..2382248	-	95	114563179	-	Sfri_2008	-	hypothetical protein
1992	 37.09	-1	2382688..2383140	-	150	114563180	-	Sfri_2009	-	hypothetical protein
1993	 43.49	0	2383411..2384838	+	475	114563181	-	Sfri_2010	-	cytochrome c oxidase, cbb3-type, subunit I
1994	 43.22	0	2384851..2385477	+	208	114563182	-	Sfri_2011	-	cytochrome c oxidase, cbb3-type, subunit II
1995	 36.72	-1	2385487..2385663	+	58	114563183	-	Sfri_2012	-	Cbb3-type cytochrome oxidase component
1996	 43.08	0	2385663..2386637	+	324	114563184	-	Sfri_2013	-	cytochrome c oxidase, cbb3-type, subunit III
1997	 39.17	0	2386754..2387233	+	159	114563185	-	Sfri_2014	-	hypothetical protein
1998	 42.02	0	2387291..2389684	+	797	114563186	-	Sfri_2015	-	heavy metal translocating P-type ATPase
1999	 37.78	-1	2389681..2389995	+	104	114563187	-	Sfri_2016	-	cytochrome oxidase maturation protein, cbb3-type
2000	 42.90	0	2390001..2390690	+	229	114563188	-	Sfri_2017	-	hypothetical protein
2001	 41.90	0	2391013..2391771	+	252	114563189	-	Sfri_2018	-	fumarate/nitrate reduction transcriptional regulator
2002	 38.60	-1	2391870..2392799	+	309	114563190	-	Sfri_2019	-	universal stress protein UspE
2003	 39.08	0	2392890..2393828	+	312	114563191	-	Sfri_2020	-	PP-loop domain-containing protein
2004	 36.39	-1	2393909..2394562	-	217	114563192	-	Sfri_2021	-	hypothetical protein
2005	 37.24	-1	2394555..2395373	-	272	114563193	-	Sfri_2022	-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
2006	 40.44	0	2395643..2396599	+	318	114563194	-	Sfri_2023	-	hypothetical protein
2007	 39.78	0	2396799..2397992	-	397	114563195	-	Sfri_2024	-	aromatic amino acid aminotransferase
2008	 41.67	0	2398541..2398900	-	119	114563196	rplT	Sfri_2025	-	50S ribosomal protein L20
2009	 42.56	0	2398917..2399111	-	64	114563197	rpmI	Sfri_2026	-	50S ribosomal protein L35
2010	 41.67	0	2399195..2399530	-	111	114563198	-	Sfri_2027	-	initiation factor 3
2011	 41.89	0	2399741..2401669	-	642	114563199	-	Sfri_2028	-	threonyl-tRNA synthetase
42.09	MEAN

3.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.