version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 148 45.23 +1 170896..171534 + 212 114561336 rplC Sfri_0148 - 50S ribosomal protein L3 149 45.87 +1 171552..172157 + 201 114561337 rplD Sfri_0149 - 50S ribosomal protein L4 150 42.90 0 172154..172456 + 100 114561338 rplW Sfri_0150 - 50S ribosomal protein L23 151 48.85 +2 172473..173297 + 274 114561339 rplB Sfri_0151 - 50S ribosomal protein L2 152 47.31 +1 173312..173590 + 92 114561340 rpsS Sfri_0152 - 30S ribosomal protein S19 153 47.75 +1 173606..173938 + 110 114561341 rplV Sfri_0153 - 50S ribosomal protein L22 154 45.36 +1 173951..174640 + 229 114561342 rpsC Sfri_0154 - 30S ribosomal protein S3 155 46.23 +1 174652..175062 + 136 114561343 rplP Sfri_0155 - 50S ribosomal protein L16 156 43.23 0 175062..175253 + 63 114561344 - Sfri_0156 - 50S ribosomal protein L29 157 39.36 0 175253..175501 + 82 114561345 - Sfri_0157 - ribosomal protein S17 158 47.15 +1 175678..176046 + 122 114561346 rplN Sfri_0158 - 50S ribosomal protein L14 159 43.17 0 176057..176371 + 104 114561347 rplX Sfri_0159 - 50S ribosomal protein L24 160 43.33 0 176385..176924 + 179 114561348 rplE Sfri_0160 - 50S ribosomal protein L5 161 47.06 +1 176935..177240 + 101 114561349 rpsN Sfri_0161 - 30S ribosomal protein S14 162 45.29 +1 177265..177657 + 130 114561350 rpsH Sfri_0162 - 30S ribosomal protein S8 163 44.19 0 177668..178201 + 177 114561351 rplF Sfri_0163 - 50S ribosomal protein L6 164 49.29 +2 178212..178562 + 116 114561352 rplR Sfri_0164 - 50S ribosomal protein L18 165 45.63 +1 178575..179078 + 167 114561353 rpsE Sfri_0165 - 30S ribosomal protein S5 166 41.80 0 179085..179273 + 62 114561354 - Sfri_0166 - ribosomal protein L30 167 47.36 +1 179273..179707 + 144 114561355 rplO Sfri_0167 - 50S ribosomal protein L15 168 42.80 0 179715..181055 + 446 114561356 secY Sfri_0168 - preprotein translocase subunit SecY 169 42.11 0 181079..181192 + 37 114561357 rpmJ Sfri_0169 - 50S ribosomal protein L36 170 46.78 +1 181309..181665 + 118 114561358 rpsM Sfri_0170 - 30S ribosomal protein S13 171 48.85 +2 181683..182075 + 130 114561359 - Sfri_0171 - 30S ribosomal protein S11 172 44.61 0 182108..182728 + 206 114561360 rpsD Sfri_0172 - 30S ribosomal protein S4 173 45.66 +1 182753..183742 + 329 114561361 - Sfri_0173 - DNA-directed RNA polymerase subunit alpha 174 46.97 +1 183783..184178 + 131 114561362 rplQ Sfri_0174 - 50S ribosomal protein L17 175 43.42 0 185244..185729 - 161 114561363 - Sfri_0175 - cytochrome c-type biogenesis protein CcmE 176 38.97 -1 185713..185925 - 70 114561364 - Sfri_0176 - Heme exporter protein D (CcmD) 177 42.70 0 185925..186671 - 248 114561365 - Sfri_0177 - heme exporter protein CcmC 178 41.34 0 186671..187357 - 228 114561366 - Sfri_0178 - heme exporter protein CcmB 179 38.40 -1 187367..188017 - 216 114561367 - Sfri_0179 - cytochrome c biogenesis protein CcmA 180 41.84 0 188342..188635 + 97 114561368 - Sfri_0180 - cytochrome c, class I 181 42.82 0 188731..189984 - 417 114561369 - Sfri_0181 - TPR repeat-containing protein 182 42.77 0 190402..192372 + 656 114561370 - Sfri_0182 - cytochrome c-type biogenesis protein CcmF 183 39.10 0 192389..192943 + 184 114561371 - Sfri_0183 - periplasmic protein thiol--disulphide oxidoreductase DsbE 184 39.75 0 192943..193425 + 160 114561372 - Sfri_0184 - cytochrome C biogenesis protein 185 42.22 0 193486..194025 + 179 114561373 - Sfri_0185 - redoxin domain-containing protein 186 41.49 0 201080..202354 + 424 114561374 - Sfri_0186 - competence/damage-inducible protein CinA 187 41.31 0 202404..205463 - 1019 114561375 - Sfri_0187 - hypothetical protein 188 40.93 0 205651..206190 - 179 114561376 - Sfri_0188 - hypothetical protein 189 45.11 0 206187..208835 - 882 114561377 - Sfri_0189 - phosphoenolpyruvate carboxylase 190 44.62 0 208988..210139 - 383 114561378 - Sfri_0190 - acetylornithine deacetylase 191 44.75 0 210403..211383 + 326 114561379 argC Sfri_0191 - N-acetyl-gamma-glutamyl-phosphate reductase 192 43.33 0 211414..212193 + 259 114561380 - Sfri_0192 - acetylglutamate kinase 193 43.05 0 212208..213113 + 301 114561381 - Sfri_0193 - ornithine carbamoyltransferase 194 44.85 0 213206..214429 + 407 114561382 - Sfri_0194 - argininosuccinate synthase 195 45.63 +1 214516..215946 + 476 114561383 - Sfri_0195 - argininosuccinate lyase 196 45.90 +1 216592..217641 + 349 114561384 - Sfri_0196 - hypothetical protein 197 46.59 +1 217648..218703 + 351 114561385 - Sfri_0197 - hypothetical protein 198 41.53 0 219013..219951 - 312 114561386 - Sfri_0198 - diguanylate cyclase 199 47.87 +1 220210..222513 - 767 114561387 - Sfri_0199 - twin-arginine translocation pathway signal 200 46.25 +1 222497..222976 - 159 114561388 - Sfri_0200 - 2Fe-2S iron-sulfur cluster binding domain-containing protein 201 47.58 +1 222995..224293 - 432 114561389 - Sfri_0201 - cytochrome c, class I 202 42.77 0 224961..225278 + 105 114561390 - Sfri_0202 - hypothetical protein 203 41.86 0 225281..225538 + 85 114561391 - Sfri_0203 - hypothetical protein 204 43.20 0 225563..227164 + 533 114561392 - Sfri_0204 - PepSY-associated TM helix domain-containing protein 205 45.11 0 227239..227934 - 231 114561393 - Sfri_0205 - pirin domain-containing protein 206 45.64 +1 228017..228463 - 148 114561394 - Sfri_0206 - DoxX family protein 207 43.51 0 228610..229503 + 297 114561395 - Sfri_0207 - transcriptional regulator, LysR family protein 208 45.80 +1 229640..230842 - 400 114561396 - Sfri_0208 - major facilitator transporter 209 46.37 +1 231035..231916 + 293 114561397 - Sfri_0209 - transcriptional regulator, LysR family protein 210 43.62 0 232046..232852 + 268 114561398 - Sfri_0210 - aldo/keto reductase 211 43.18 0 233105..233551 + 148 114561399 - Sfri_0211 - transcriptional regulator, MerR family protein 212 46.85 +1 233551..235791 + 746 114561400 - Sfri_0212 - copper-translocating P-type ATPase 213 43.30 0 235801..236151 + 116 114561401 - Sfri_0213 - plastocyanin domain-containing protein 214 41.52 0 236331..236843 + 170 114561402 - Sfri_0214 - hypothetical protein 215 44.73 0 236893..237366 + 157 114561403 - Sfri_0215 - redoxin domain-containing protein 216 44.07 0 237477..239423 - 648 114561404 - Sfri_0216 - methyl-accepting chemotaxis sensory transducer 217 44.82 0 239540..240880 - 446 114561405 envZ Sfri_0217 - osmolarity sensor protein 218 45.45 +1 240884..241609 - 241 114561406 ompR Sfri_0218 - osmolarity response regulator 219 42.98 0 241727..242524 - 265 114561407 - Sfri_0219 - hypothetical protein 220 46.49 +1 242736..243647 - 303 114561408 - Sfri_0220 - protoheme IX farnesyltransferase 221 42.42 0 243681..244010 - 109 114561409 - Sfri_0221 - cytochrome C oxidase subunit IV 222 42.77 0 244010..244645 - 211 114561410 - Sfri_0222 - cytochrome c oxidase, subunit III 223 45.74 +1 244645..246627 - 660 114561411 - Sfri_0223 - cytochrome-c oxidase 224 44.00 0 246630..247670 - 346 114561412 - Sfri_0224 - ubiquinol oxidase, subunit II 225 42.98 0 247848..248303 - 151 114561413 - Sfri_0225 - hypothetical protein 226 43.56 0 248689..249216 + 175 114561414 - Sfri_0226 - transcriptional regulator, TetR family protein 227 46.86 +1 249219..250268 + 349 114561415 - Sfri_0227 - alcohol dehydrogenase 228 42.07 0 250509..251321 + 270 114561416 - Sfri_0228 - regulatory protein RecX 229 45.92 +1 251511..252884 - 457 114561417 - Sfri_0229 - fumarate lyase 230 47.67 +1 252977..255703 + 908 114561418 - Sfri_0230 - aconitate hydratase 1 231 37.15 -1 256270..256950 + 226 114561419 - Sfri_0231 - putative integral membrane protein 232 43.97 0 257187..257966 - 259 114561420 - Sfri_0232 - acetoin reductases 233 41.18 0 258460..259071 - 203 114561421 - Sfri_0233 - hypothetical protein 234 43.42 0 259285..259770 - 161 114561422 - Sfri_0234 - transcription elongation factor GreB 235 44.58 0 259984..262356 + 790 114561423 - Sfri_0235 - RNA-binding S1 domain-containing protein 236 41.29 0 262621..264228 + 535 114561424 - Sfri_0236 - sulfatase 237 41.89 0 264239..264682 + 147 114561425 - Sfri_0237 - diacylglycerol kinase 238 37.19 -1 264859..265533 + 224 114561426 - Sfri_0238 - two component transcriptional regulator, winged helix family protein 239 39.74 0 265533..266969 + 478 114561427 - Sfri_0239 - periplasmic sensor signal transduction histidine kinase 240 42.51 0 267322..269358 + 678 114561428 - Sfri_0240 - sulfatase 241 43.79 0 269350..269856 - 168 114561429 - Sfri_0241 - hypothetical protein 242 44.86 0 269934..270740 - 268 114561430 - Sfri_0242 - bioH protein 243 43.99 0 270784..271590 + 268 114561431 - Sfri_0243 - competence protein ComF 244 44.91 0 271862..272440 + 192 114561432 - Sfri_0244 - putative DNA uptake protein 245 44.55 0 272549..272878 - 109 114561433 - Sfri_0245 - peptidylprolyl isomerase, FKBP-type 246 40.88 0 272915..274849 - 644 114561434 - Sfri_0246 - peptidase S9 prolyl oligopeptidase 247 43.53 0 274921..276264 - 447 114561435 - Sfri_0247 - MATE efflux family protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0