version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1853 43.38 0 2211665..2214112 - 815 114563041 fadE Sfri_1869 - acyl-CoA dehydrogenase 1854 41.83 0 2214361..2215137 + 258 114563042 - Sfri_1870 - glutamine amidotransferase, class-II 1855 41.67 0 2215123..2216082 - 319 114563043 - Sfri_1871 - hypothetical protein 1856 40.53 0 2216158..2216574 - 138 114563044 - Sfri_1872 - methylated-DNA-(protein)-cysteine S-methyltransferase 1857 39.62 0 2216619..2217302 - 227 114563045 - Sfri_1873 - channel protein, hemolysin III family protein 1858 38.81 -1 2217557..2218195 + 212 114563046 - Sfri_1874 - hypothetical protein 1859 38.89 -1 2218267..2218896 - 209 114563047 - Sfri_1875 - rhomboid family protein 1860 40.25 0 2219082..2219789 - 235 114563048 - Sfri_1876 - exsB protein 1861 40.66 0 2220000..2220668 + 222 114563049 - Sfri_1877 - radical activating enzyme 1862 42.18 0 2220763..2221824 - 353 114563050 - Sfri_1878 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 1863 37.63 -1 2222670..2223158 + 162 114563051 - Sfri_1879 - hypothetical protein 1864 36.67 -1 2223887..2224846 + 319 114563052 - Sfri_1880 - hypothetical protein 1865 38.19 -1 2225555..2225842 + 95 114563053 - Sfri_1882 - hypothetical protein 1866 38.28 -1 2226182..2228386 + 734 114563054 - Sfri_1883 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1867 40.04 0 2228584..2229075 - 163 114563055 - Sfri_1884 - SecC motif-containing protein 1868 37.97 -1 2229080..2229640 - 186 114563056 - Sfri_1885 - hypothetical protein 1869 40.46 0 2229793..2230395 + 200 114563057 - Sfri_1886 - Smr protein/MutS2 1870 42.78 0 2230607..2232448 - 613 114563058 - Sfri_1887 - peptidyl-dipeptidase A 1871 40.34 0 2232644..2233285 + 213 114563059 - Sfri_1888 - transcriptional regulator, TetR family protein 1872 43.70 0 2233297..2235573 + 758 114563060 - Sfri_1889 - acyl-CoA dehydrogenase 1873 43.19 0 2235850..2237289 - 479 114563061 - Sfri_1890 - pyruvate kinase 1874 42.81 0 2237719..2238573 - 284 114563062 - Sfri_1891 - DNA-binding transcriptional regulator HexR 1875 42.65 0 2238911..2240380 + 489 114563063 - Sfri_1892 - glucose-6-phosphate 1-dehydrogenase 1876 40.92 0 2240390..2241088 + 232 114563064 - Sfri_1893 - 6-phosphogluconolactonase 1877 45.32 +1 2241100..2242926 + 608 114563065 - Sfri_1894 - phosphogluconate dehydratase 1878 45.12 0 2242948..2243592 + 214 114563066 - Sfri_1895 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 1879 39.18 0 2243860..2244372 + 170 114563067 - Sfri_1896 - hypothetical protein 1880 42.53 0 2244642..2245337 + 231 114563068 - Sfri_1897 - aspartate racemase 1881 42.53 0 2245498..2248095 - 865 114563069 - Sfri_1898 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1882 41.74 0 2248823..2249524 + 233 114563070 - Sfri_1899 - HAD family hydrolase 1883 41.43 0 2249526..2250488 + 320 114563071 - Sfri_1900 - transcriptional regulator, DeoR family protein 1884 40.59 0 2250689..2252425 + 578 114563072 - Sfri_1901 - putative nucleoside transport protein 1885 39.53 0 2252400..2253593 - 397 114563073 - Sfri_1902 - transposase, IS4 family protein 1886 39.58 0 2253894..2255414 + 506 114563074 - Sfri_1903 - mannitol dehydrogenase domain-containing protein 1887 40.50 0 2255420..2256340 + 306 114563075 - Sfri_1904 - ribokinase-like domain-containing protein 1888 42.77 0 2256483..2257859 - 458 114563076 - Sfri_1905 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 1889 38.27 -1 2257869..2258456 - 195 114563077 - Sfri_1906 - hypothetical protein 1890 41.56 0 2258569..2259783 - 404 114563078 - Sfri_1907 - aminotransferase AlaT 1891 41.53 0 2260064..2260624 - 186 114563079 - Sfri_1908 - elongation factor P 1892 38.97 -1 2260674..2261861 - 395 114563080 - Sfri_1909 - hypothetical protein 1893 43.75 0 2261955..2262482 - 175 114563081 - Sfri_1910 - flavodoxin FldA 1894 43.59 0 2262533..2262805 - 90 114563082 - Sfri_1911 - LexA regulated protein 1895 39.64 0 2262814..2263035 - 73 114563083 - Sfri_1912 - hypothetical protein 1896 43.28 0 2263134..2263907 - 257 114563084 - Sfri_1913 - alpha/beta hydrolase fold 1897 40.35 0 2264213..2264839 + 208 114563085 - Sfri_1914 - replication initiation regulator SeqA 1898 42.09 0 2264894..2266537 + 547 114563086 - Sfri_1915 - phosphoglucomutase 1899 37.01 -1 2266708..2267115 + 135 114563087 - Sfri_1916 - hypothetical protein 1900 44.47 0 2267196..2269412 - 738 114563088 - Sfri_1917 - catalase/peroxidase HPI 1901 38.20 -1 2269609..2271171 - 520 114563089 - Sfri_1918 - diguanylate cyclase/phosphodiesterase 1902 41.54 0 2271604..2273016 - 470 114563090 - Sfri_1919 - hypothetical protein 1903 41.80 0 2273286..2274950 - 554 114563091 - Sfri_1920 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 1904 39.67 0 2275562..2276902 + 446 114563092 pssA Sfri_1921 - phosphatidylserine synthase 1905 41.79 0 2276974..2277777 + 267 114563093 - Sfri_1922 - DTW domain-containing protein 1906 39.17 0 2277928..2278287 + 119 114563094 - Sfri_1923 - hypothetical protein 1907 40.60 0 2278417..2280426 + 669 114563095 - Sfri_1924 - ATP-dependent DNA helicase, RecQ family protein 1908 42.03 0 2280423..2280698 + 91 114563096 - Sfri_1925 - hypothetical protein 1909 40.74 0 2281014..2281580 - 188 114563097 - Sfri_1926 - ecotin precursor 1910 37.63 -1 2281991..2283013 + 340 114563098 - Sfri_1927 - diguanylate cyclase 1911 43.91 0 2283178..2285880 - 900 114563099 - Sfri_1928 - CoA-binding domain-containing protein 1912 41.81 0 2286144..2289329 - 1061 114563100 - Sfri_1929 - acriflavin resistance protein 1913 42.93 0 2289335..2290522 - 395 114563101 - Sfri_1930 - RND family efflux transporter MFP subunit 1914 44.39 0 2290702..2291262 + 186 114563102 - Sfri_1931 - GCN5-related N-acetyltransferase 1915 42.14 0 2291327..2292280 - 317 114563103 - Sfri_1932 - thioredoxin reductase 1916 42.92 0 2292482..2292961 - 159 114563104 - Sfri_1933 - peptide methionine sulfoxide reductase 1917 42.66 0 2293183..2294211 + 342 114563105 - Sfri_1934 - succinylglutamate desuccinylase 1918 44.70 0 2294368..2295546 + 392 114563106 - Sfri_1935 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) 1919 46.11 +1 2295550..2296527 + 325 114563107 - Sfri_1936 - transketolase, central region 1920 44.67 0 2296537..2298159 + 540 114563108 - Sfri_1937 - dihydrolipoamide acetyltransferase 1921 44.94 0 2298262..2299329 + 355 114563109 - Sfri_1938 - quinolinate synthetase 1922 39.91 0 2299505..2301421 - 638 114563110 - Sfri_1939 - methyl-accepting chemotaxis sensory transducer 1923 40.75 0 2302010..2303020 - 336 114563111 - Sfri_1940 - glyceraldehyde-3-phosphate dehydrogenase, type I 1924 38.99 0 2303251..2304081 - 276 114563112 - Sfri_1941 - hypothetical protein 1925 40.71 0 2304282..2305718 + 478 114563113 - Sfri_1942 - glyceraldehyde-3-phosphate dehydrogenase 1926 38.27 -1 2306879..2307364 - 161 114563114 - Sfri_1943 - transcriptional regulator, MarR family protein 1927 42.80 0 2307490..2308197 - 235 114563115 - Sfri_1944 - hypothetical protein 1928 37.93 -1 2308225..2309442 - 405 114563116 - Sfri_1945 - putative transporter, BCCT family protein 1929 43.02 0 2309678..2311360 - 560 114563117 - Sfri_1946 - choline dehydrogenase 1930 44.44 0 2311375..2312841 - 488 114563118 - Sfri_1947 - betaine aldehyde dehydrogenase 1931 41.37 0 2312841..2313437 - 198 114563119 - Sfri_1948 - transcriptional regulator BetI 1932 43.96 0 2314169..2314375 + 68 114563120 - Sfri_1949 - hypothetical protein 1933 40.91 0 2315241..2315834 + 197 114563121 - Sfri_1950 - phage integrase family protein 1934 47.37 +1 2315997..2317100 + 367 114563122 - Sfri_1951 - helix-turn-helix domain-containing protein 1935 44.44 0 2317081..2317575 + 164 114563123 - Sfri_1952 - hypothetical protein 1936 43.38 0 2317631..2319202 + 523 114563124 - Sfri_1953 - type I restriction-modification system, M subunit 1937 41.52 0 2319199..2320419 + 406 114563125 - Sfri_1954 - restriction modification system DNA specificity subunit 1938 47.80 +1 2320508..2321509 + 333 114563126 - Sfri_1955 - filamentation induced by cAMP protein Fic 1939 44.06 0 2321573..2324686 + 1037 114563127 - Sfri_1956 - type I site-specific deoxyribonuclease, HsdR family protein 1940 33.41 -2 2325190..2326515 + 441 114563128 - Sfri_1957 - hypothetical protein 1941 43.57 0 2326702..2328771 - 689 114563129 - Sfri_1958 - endothelin-converting protein 1 1942 44.00 0 2329255..2329854 - 199 114563130 - Sfri_1959 - hypothetical protein 1943 42.48 0 2329859..2330842 - 327 114563131 - Sfri_1960 - hypothetical protein 1944 46.14 +1 2330839..2331603 - 254 114563132 - Sfri_1961 - ABC transporter related 1945 46.00 +1 2331606..2332718 - 370 114563133 - Sfri_1962 - hypothetical protein 1946 45.41 +1 2333041..2333454 + 137 114563134 - Sfri_1963 - putative prophage repressor 1947 43.99 0 2333461..2334717 + 418 114563135 - Sfri_1964 - DNA-directed DNA polymerase 1948 39.95 0 2334858..2335235 + 125 114563136 - Sfri_1965 - hypothetical protein 1949 35.40 -2 2335339..2335773 + 144 114563137 - Sfri_1966 - hypothetical protein 1950 36.81 -1 2335886..2336317 + 143 114563138 - Sfri_1967 - hypothetical protein 1951 43.60 0 2336453..2336968 + 171 114563139 - Sfri_1968 - hypothetical protein 1952 45.85 +1 2336965..2338938 + 657 114563140 - Sfri_1969 - copper-resistance protein, CopA family protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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