version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1814 45.37 +1 2154866..2155297 + 143 114563002 - Sfri_1827 - hypothetical protein 1815 36.56 -1 2156065..2156715 + 216 114563003 - Sfri_1828 - two component transcriptional regulator, LuxR family protein 1816 37.72 -1 2156724..2160281 - 1185 114563004 - Sfri_1829 - periplasmic sensor hybrid histidine kinase 1817 39.51 0 2161654..2162463 + 269 114563005 - Sfri_1831 - ABC transporter related 1818 40.50 0 2162463..2164430 + 655 114563006 - Sfri_1832 - AMP-dependent synthetase and ligase 1819 37.92 -1 2164427..2165320 + 297 114563007 - Sfri_1833 - inner-membrane translocator 1820 39.66 0 2165417..2166490 + 357 114563008 - Sfri_1834 - inner-membrane translocator 1821 41.43 0 2166579..2167826 + 415 114563009 - Sfri_1835 - putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein 1822 39.42 0 2167927..2168748 + 273 114563010 - Sfri_1836 - ABC transporter related 1823 39.98 0 2168811..2170088 + 425 114563011 - Sfri_1837 - putative phenylacetate-coenzyme A ligase 1824 42.22 0 2170446..2170940 + 164 114563012 - Sfri_1838 - thioesterase superfamily protein 1825 45.10 0 2171480..2171938 + 152 114563013 - Sfri_1839 - hypothetical protein 1826 42.46 0 2172379..2172849 + 156 114563014 - Sfri_1840 - Ferritin, Dps family protein 1827 40.31 0 2173025..2173612 - 195 114563015 - Sfri_1841 - transcriptional regulator, TetR family protein 1828 44.78 0 2174016..2175422 - 468 114563016 - Sfri_1842 - amino acid carrier protein 1829 43.30 0 2175813..2177186 + 457 114563017 - Sfri_1843 - periplasmic sensor signal transduction histidine kinase 1830 46.59 +1 2177207..2177749 + 180 114563018 - Sfri_1844 - response regulator receiver protein 1831 39.53 0 2178319..2179512 + 397 114563019 - Sfri_1845 - transposase, IS4 family protein 1832 31.08 -2 2179865..2182477 - 870 114563020 - Sfri_1847 - hypothetical protein 1833 32.75 -2 2182479..2184032 - 517 114563021 - Sfri_1848 - hypothetical protein 1834 49.06 +2 2184907..2186667 + 586 114563022 - Sfri_1849 - hypothetical protein 1835 44.85 0 2186928..2187578 + 216 114563023 - Sfri_1850 - hypothetical protein 1836 43.83 0 2187571..2188389 + 272 114563024 - Sfri_1851 - hypothetical protein 1837 44.71 0 2189032..2189778 + 248 114563025 - Sfri_1852 - hypothetical protein 1838 45.86 +1 2189787..2191175 + 462 114563026 - Sfri_1853 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1839 44.15 0 2191177..2191740 + 187 114563027 - Sfri_1854 - hypothetical protein 1840 43.11 0 2192051..2192950 - 299 114563028 - Sfri_1855 - transcriptional regulator, LysR family protein 1841 43.26 0 2193304..2193948 + 214 114563029 - Sfri_1856 - transcriptional regulator, GntR family protein 1842 44.94 0 2194005..2194883 + 292 114563030 prpB Sfri_1857 - 2-methylisocitrate lyase 1843 44.36 0 2194988..2196112 + 374 114563031 - Sfri_1858 - 2-methylcitrate synthase/citrate synthase II 1844 46.23 +1 2196179..2198791 + 870 114563032 - Sfri_1859 - aconitate hydratase 1845 45.98 +1 2198881..2200050 + 389 114563033 - Sfri_1860 - putative AcnD-accessory protein PrpF 1846 43.84 0 2200520..2202679 + 719 114563034 - Sfri_1861 - sodium/hydrogen exchanger 1847 44.87 0 2202841..2203308 - 155 114563035 bcp Sfri_1862 - thioredoxin-dependent thiol peroxidase 1848 41.90 0 2203395..2203931 - 178 114563036 - Sfri_1863 - glycine cleavage system transcriptional repressor, putative 1849 41.58 0 2204215..2205099 + 294 114563037 - Sfri_1864 - dihydrodipicolinate synthase 1850 38.71 -1 2205104..2206201 + 365 114563038 - Sfri_1865 - NlpB/DapX family lipoprotein 1851 40.76 0 2206663..2207820 + 385 114563039 - Sfri_1866 - RND family efflux transporter MFP subunit 1852 45.45 +1 2211147..2211575 - 142 114563040 - Sfri_1868 - hypothetical protein 1853 43.38 0 2211665..2214112 - 815 114563041 fadE Sfri_1869 - acyl-CoA dehydrogenase 1854 41.83 0 2214361..2215137 + 258 114563042 - Sfri_1870 - glutamine amidotransferase, class-II 1855 41.67 0 2215123..2216082 - 319 114563043 - Sfri_1871 - hypothetical protein 1856 40.53 0 2216158..2216574 - 138 114563044 - Sfri_1872 - methylated-DNA-(protein)-cysteine S-methyltransferase 1857 39.62 0 2216619..2217302 - 227 114563045 - Sfri_1873 - channel protein, hemolysin III family protein 1858 38.81 -1 2217557..2218195 + 212 114563046 - Sfri_1874 - hypothetical protein 1859 38.89 -1 2218267..2218896 - 209 114563047 - Sfri_1875 - rhomboid family protein 1860 40.25 0 2219082..2219789 - 235 114563048 - Sfri_1876 - exsB protein 1861 40.66 0 2220000..2220668 + 222 114563049 - Sfri_1877 - radical activating enzyme 1862 42.18 0 2220763..2221824 - 353 114563050 - Sfri_1878 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 1863 37.63 -1 2222670..2223158 + 162 114563051 - Sfri_1879 - hypothetical protein 1864 36.67 -1 2223887..2224846 + 319 114563052 - Sfri_1880 - hypothetical protein 1865 38.19 -1 2225555..2225842 + 95 114563053 - Sfri_1882 - hypothetical protein 1866 38.28 -1 2226182..2228386 + 734 114563054 - Sfri_1883 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1867 40.04 0 2228584..2229075 - 163 114563055 - Sfri_1884 - SecC motif-containing protein 1868 37.97 -1 2229080..2229640 - 186 114563056 - Sfri_1885 - hypothetical protein 1869 40.46 0 2229793..2230395 + 200 114563057 - Sfri_1886 - Smr protein/MutS2 1870 42.78 0 2230607..2232448 - 613 114563058 - Sfri_1887 - peptidyl-dipeptidase A 1871 40.34 0 2232644..2233285 + 213 114563059 - Sfri_1888 - transcriptional regulator, TetR family protein 1872 43.70 0 2233297..2235573 + 758 114563060 - Sfri_1889 - acyl-CoA dehydrogenase 1873 43.19 0 2235850..2237289 - 479 114563061 - Sfri_1890 - pyruvate kinase 1874 42.81 0 2237719..2238573 - 284 114563062 - Sfri_1891 - DNA-binding transcriptional regulator HexR 1875 42.65 0 2238911..2240380 + 489 114563063 - Sfri_1892 - glucose-6-phosphate 1-dehydrogenase 1876 40.92 0 2240390..2241088 + 232 114563064 - Sfri_1893 - 6-phosphogluconolactonase 1877 45.32 +1 2241100..2242926 + 608 114563065 - Sfri_1894 - phosphogluconate dehydratase 1878 45.12 0 2242948..2243592 + 214 114563066 - Sfri_1895 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 1879 39.18 0 2243860..2244372 + 170 114563067 - Sfri_1896 - hypothetical protein 1880 42.53 0 2244642..2245337 + 231 114563068 - Sfri_1897 - aspartate racemase 1881 42.53 0 2245498..2248095 - 865 114563069 - Sfri_1898 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1882 41.74 0 2248823..2249524 + 233 114563070 - Sfri_1899 - HAD family hydrolase 1883 41.43 0 2249526..2250488 + 320 114563071 - Sfri_1900 - transcriptional regulator, DeoR family protein 1884 40.59 0 2250689..2252425 + 578 114563072 - Sfri_1901 - putative nucleoside transport protein 1885 39.53 0 2252400..2253593 - 397 114563073 - Sfri_1902 - transposase, IS4 family protein 1886 39.58 0 2253894..2255414 + 506 114563074 - Sfri_1903 - mannitol dehydrogenase domain-containing protein 1887 40.50 0 2255420..2256340 + 306 114563075 - Sfri_1904 - ribokinase-like domain-containing protein 1888 42.77 0 2256483..2257859 - 458 114563076 - Sfri_1905 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 1889 38.27 -1 2257869..2258456 - 195 114563077 - Sfri_1906 - hypothetical protein 1890 41.56 0 2258569..2259783 - 404 114563078 - Sfri_1907 - aminotransferase AlaT 1891 41.53 0 2260064..2260624 - 186 114563079 - Sfri_1908 - elongation factor P 1892 38.97 -1 2260674..2261861 - 395 114563080 - Sfri_1909 - hypothetical protein 1893 43.75 0 2261955..2262482 - 175 114563081 - Sfri_1910 - flavodoxin FldA 1894 43.59 0 2262533..2262805 - 90 114563082 - Sfri_1911 - LexA regulated protein 1895 39.64 0 2262814..2263035 - 73 114563083 - Sfri_1912 - hypothetical protein 1896 43.28 0 2263134..2263907 - 257 114563084 - Sfri_1913 - alpha/beta hydrolase fold 1897 40.35 0 2264213..2264839 + 208 114563085 - Sfri_1914 - replication initiation regulator SeqA 1898 42.09 0 2264894..2266537 + 547 114563086 - Sfri_1915 - phosphoglucomutase 1899 37.01 -1 2266708..2267115 + 135 114563087 - Sfri_1916 - hypothetical protein 1900 44.47 0 2267196..2269412 - 738 114563088 - Sfri_1917 - catalase/peroxidase HPI 1901 38.20 -1 2269609..2271171 - 520 114563089 - Sfri_1918 - diguanylate cyclase/phosphodiesterase 1902 41.54 0 2271604..2273016 - 470 114563090 - Sfri_1919 - hypothetical protein 1903 41.80 0 2273286..2274950 - 554 114563091 - Sfri_1920 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 1904 39.67 0 2275562..2276902 + 446 114563092 pssA Sfri_1921 - phosphatidylserine synthase 1905 41.79 0 2276974..2277777 + 267 114563093 - Sfri_1922 - DTW domain-containing protein 1906 39.17 0 2277928..2278287 + 119 114563094 - Sfri_1923 - hypothetical protein 1907 40.60 0 2278417..2280426 + 669 114563095 - Sfri_1924 - ATP-dependent DNA helicase, RecQ family protein 1908 42.03 0 2280423..2280698 + 91 114563096 - Sfri_1925 - hypothetical protein 1909 40.74 0 2281014..2281580 - 188 114563097 - Sfri_1926 - ecotin precursor 1910 37.63 -1 2281991..2283013 + 340 114563098 - Sfri_1927 - diguanylate cyclase 1911 43.91 0 2283178..2285880 - 900 114563099 - Sfri_1928 - CoA-binding domain-containing protein 1912 41.81 0 2286144..2289329 - 1061 114563100 - Sfri_1929 - acriflavin resistance protein 1913 42.93 0 2289335..2290522 - 395 114563101 - Sfri_1930 - RND family efflux transporter MFP subunit 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0