version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1777 42.47 0 2107849..2109063 + 404 114562965 - Sfri_1790 - Fmu (Sun) domain-containing protein 1778 36.85 -1 2109269..2111542 + 757 114562966 - Sfri_1791 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1779 38.12 -1 2112221..2114476 + 751 114562967 - Sfri_1792 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1780 43.62 0 2114600..2115736 - 378 114562968 - Sfri_1793 - alanine dehydrogenase 1781 37.95 -1 2115898..2116395 + 165 114562969 - Sfri_1794 - leucine-responsive transcriptional regulator 1782 42.90 0 2116668..2119322 + 884 114562970 - Sfri_1795 - cell divisionFtsK/SpoIIIE 1783 40.78 0 2119334..2119978 + 214 114562971 - Sfri_1796 - outer membrane lipoprotein carrier protein LolA 1784 45.72 +1 2119987..2121318 + 443 114562972 - Sfri_1797 - recombination factor protein RarA 1785 36.80 -1 2121311..2121685 + 124 114562973 - Sfri_1798 - CrcB protein 1786 42.35 0 2121704..2122990 + 428 114562974 - Sfri_1799 - seryl-tRNA synthetase 1787 39.82 0 2123475..2123813 - 112 114562975 - Sfri_1800 - DsrC family protein 1788 36.57 -1 2123807..2124115 - 102 114562976 - Sfri_1801 - putative uncharacterized protein involved in oxidation of intracellular sulfur 1789 43.98 0 2124112..2124468 - 118 114562977 - Sfri_1802 - DsrE family protein 1790 42.31 0 2124488..2124877 - 129 114562978 - Sfri_1803 - DsrE family protein 1791 40.00 0 2124943..2125602 - 219 114562979 - Sfri_1804 - hypothetical protein 1792 43.41 0 2125820..2126722 - 300 114562980 - Sfri_1805 - putative DNA-binding transcriptional regulator 1793 42.48 0 2127797..2128474 + 225 114562981 - Sfri_1806 - hypothetical protein 1794 43.43 0 2128486..2130168 + 560 114562982 - Sfri_1807 - hypothetical protein 1795 42.20 0 2130914..2132458 + 514 114562983 - Sfri_1808 - methyl-accepting chemotaxis sensory transducer 1796 40.35 0 2133187..2134767 + 526 114562984 - Sfri_1809 - choline/carnitine/betaine transporter 1797 37.10 -1 2134885..2135601 - 238 114562985 - Sfri_1810 - DNA polymerase III subunit epsilon 1798 39.72 0 2135612..2137489 - 625 114562986 - Sfri_1811 - cyclic nucleotide-binding protein 1799 46.19 +1 2137928..2139133 - 401 114562987 - Sfri_1812 - hypothetical protein 1800 48.10 +1 2139133..2139843 - 236 114562988 - Sfri_1813 - ABC transporter related 1801 44.34 0 2139852..2141150 - 432 114562989 - Sfri_1814 - RND family efflux transporter MFP subunit 1802 42.90 0 2141736..2142707 + 323 114562990 - Sfri_1815 - heat shock protein DnaJ domain-containing protein 1803 42.14 0 2142710..2143027 + 105 114562991 - Sfri_1816 - hypothetical protein 1804 43.91 0 2143466..2144704 + 412 114562992 - Sfri_1817 - glycine betaine/L-proline ABC transporter, ATPase subunit 1805 45.77 +1 2144731..2145582 + 283 114562993 - Sfri_1818 - binding-protein-dependent transport systems inner membrane component 1806 44.44 0 2145579..2146613 + 344 114562994 proX Sfri_1819 - glycine betaine transporter periplasmic subunit 1807 44.54 0 2146961..2147995 + 344 114562995 proX Sfri_1820 - glycine betaine transporter periplasmic subunit 1808 43.32 0 2148238..2149419 - 393 114562996 - Sfri_1821 - carbohydrate kinase, YjeF related protein 1809 38.82 -1 2149707..2150837 + 376 114562997 - Sfri_1822 - hypothetical protein 1810 39.16 0 2150912..2152129 - 405 114562998 - Sfri_1823 - metal dependent phosphohydrolase 1811 41.86 0 2152471..2153256 - 261 114562999 - Sfri_1824 - extradiol ring-cleavage dioxygenase III subunit B 1812 40.61 0 2153334..2154281 - 315 114563000 - Sfri_1825 - transcriptional regulator, LysR family protein 1813 38.50 -1 2154308..2154733 + 141 114563001 - Sfri_1826 - transmembrane pair domain-containing protein 1814 45.37 +1 2154866..2155297 + 143 114563002 - Sfri_1827 - hypothetical protein 1815 36.56 -1 2156065..2156715 + 216 114563003 - Sfri_1828 - two component transcriptional regulator, LuxR family protein 1816 37.72 -1 2156724..2160281 - 1185 114563004 - Sfri_1829 - periplasmic sensor hybrid histidine kinase 1817 39.51 0 2161654..2162463 + 269 114563005 - Sfri_1831 - ABC transporter related 1818 40.50 0 2162463..2164430 + 655 114563006 - Sfri_1832 - AMP-dependent synthetase and ligase 1819 37.92 -1 2164427..2165320 + 297 114563007 - Sfri_1833 - inner-membrane translocator 1820 39.66 0 2165417..2166490 + 357 114563008 - Sfri_1834 - inner-membrane translocator 1821 41.43 0 2166579..2167826 + 415 114563009 - Sfri_1835 - putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein 1822 39.42 0 2167927..2168748 + 273 114563010 - Sfri_1836 - ABC transporter related 1823 39.98 0 2168811..2170088 + 425 114563011 - Sfri_1837 - putative phenylacetate-coenzyme A ligase 1824 42.22 0 2170446..2170940 + 164 114563012 - Sfri_1838 - thioesterase superfamily protein 1825 45.10 0 2171480..2171938 + 152 114563013 - Sfri_1839 - hypothetical protein 1826 42.46 0 2172379..2172849 + 156 114563014 - Sfri_1840 - Ferritin, Dps family protein 1827 40.31 0 2173025..2173612 - 195 114563015 - Sfri_1841 - transcriptional regulator, TetR family protein 1828 44.78 0 2174016..2175422 - 468 114563016 - Sfri_1842 - amino acid carrier protein 1829 43.30 0 2175813..2177186 + 457 114563017 - Sfri_1843 - periplasmic sensor signal transduction histidine kinase 1830 46.59 +1 2177207..2177749 + 180 114563018 - Sfri_1844 - response regulator receiver protein 1831 39.53 0 2178319..2179512 + 397 114563019 - Sfri_1845 - transposase, IS4 family protein 1832 31.08 -2 2179865..2182477 - 870 114563020 - Sfri_1847 - hypothetical protein 1833 32.75 -2 2182479..2184032 - 517 114563021 - Sfri_1848 - hypothetical protein 1834 49.06 +2 2184907..2186667 + 586 114563022 - Sfri_1849 - hypothetical protein 1835 44.85 0 2186928..2187578 + 216 114563023 - Sfri_1850 - hypothetical protein 1836 43.83 0 2187571..2188389 + 272 114563024 - Sfri_1851 - hypothetical protein 1837 44.71 0 2189032..2189778 + 248 114563025 - Sfri_1852 - hypothetical protein 1838 45.86 +1 2189787..2191175 + 462 114563026 - Sfri_1853 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1839 44.15 0 2191177..2191740 + 187 114563027 - Sfri_1854 - hypothetical protein 1840 43.11 0 2192051..2192950 - 299 114563028 - Sfri_1855 - transcriptional regulator, LysR family protein 1841 43.26 0 2193304..2193948 + 214 114563029 - Sfri_1856 - transcriptional regulator, GntR family protein 1842 44.94 0 2194005..2194883 + 292 114563030 prpB Sfri_1857 - 2-methylisocitrate lyase 1843 44.36 0 2194988..2196112 + 374 114563031 - Sfri_1858 - 2-methylcitrate synthase/citrate synthase II 1844 46.23 +1 2196179..2198791 + 870 114563032 - Sfri_1859 - aconitate hydratase 1845 45.98 +1 2198881..2200050 + 389 114563033 - Sfri_1860 - putative AcnD-accessory protein PrpF 1846 43.84 0 2200520..2202679 + 719 114563034 - Sfri_1861 - sodium/hydrogen exchanger 1847 44.87 0 2202841..2203308 - 155 114563035 bcp Sfri_1862 - thioredoxin-dependent thiol peroxidase 1848 41.90 0 2203395..2203931 - 178 114563036 - Sfri_1863 - glycine cleavage system transcriptional repressor, putative 1849 41.58 0 2204215..2205099 + 294 114563037 - Sfri_1864 - dihydrodipicolinate synthase 1850 38.71 -1 2205104..2206201 + 365 114563038 - Sfri_1865 - NlpB/DapX family lipoprotein 1851 40.76 0 2206663..2207820 + 385 114563039 - Sfri_1866 - RND family efflux transporter MFP subunit 1852 45.45 +1 2211147..2211575 - 142 114563040 - Sfri_1868 - hypothetical protein 1853 43.38 0 2211665..2214112 - 815 114563041 fadE Sfri_1869 - acyl-CoA dehydrogenase 1854 41.83 0 2214361..2215137 + 258 114563042 - Sfri_1870 - glutamine amidotransferase, class-II 1855 41.67 0 2215123..2216082 - 319 114563043 - Sfri_1871 - hypothetical protein 1856 40.53 0 2216158..2216574 - 138 114563044 - Sfri_1872 - methylated-DNA-(protein)-cysteine S-methyltransferase 1857 39.62 0 2216619..2217302 - 227 114563045 - Sfri_1873 - channel protein, hemolysin III family protein 1858 38.81 -1 2217557..2218195 + 212 114563046 - Sfri_1874 - hypothetical protein 1859 38.89 -1 2218267..2218896 - 209 114563047 - Sfri_1875 - rhomboid family protein 1860 40.25 0 2219082..2219789 - 235 114563048 - Sfri_1876 - exsB protein 1861 40.66 0 2220000..2220668 + 222 114563049 - Sfri_1877 - radical activating enzyme 1862 42.18 0 2220763..2221824 - 353 114563050 - Sfri_1878 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 1863 37.63 -1 2222670..2223158 + 162 114563051 - Sfri_1879 - hypothetical protein 1864 36.67 -1 2223887..2224846 + 319 114563052 - Sfri_1880 - hypothetical protein 1865 38.19 -1 2225555..2225842 + 95 114563053 - Sfri_1882 - hypothetical protein 1866 38.28 -1 2226182..2228386 + 734 114563054 - Sfri_1883 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1867 40.04 0 2228584..2229075 - 163 114563055 - Sfri_1884 - SecC motif-containing protein 1868 37.97 -1 2229080..2229640 - 186 114563056 - Sfri_1885 - hypothetical protein 1869 40.46 0 2229793..2230395 + 200 114563057 - Sfri_1886 - Smr protein/MutS2 1870 42.78 0 2230607..2232448 - 613 114563058 - Sfri_1887 - peptidyl-dipeptidase A 1871 40.34 0 2232644..2233285 + 213 114563059 - Sfri_1888 - transcriptional regulator, TetR family protein 1872 43.70 0 2233297..2235573 + 758 114563060 - Sfri_1889 - acyl-CoA dehydrogenase 1873 43.19 0 2235850..2237289 - 479 114563061 - Sfri_1890 - pyruvate kinase 1874 42.81 0 2237719..2238573 - 284 114563062 - Sfri_1891 - DNA-binding transcriptional regulator HexR 1875 42.65 0 2238911..2240380 + 489 114563063 - Sfri_1892 - glucose-6-phosphate 1-dehydrogenase 1876 40.92 0 2240390..2241088 + 232 114563064 - Sfri_1893 - 6-phosphogluconolactonase 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0