version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1737 39.80 0 2058544..2059641 + 365 114562925 - Sfri_1750 - hypothetical protein 1738 41.77 0 2059795..2060505 + 236 114562926 - Sfri_1751 - DNA replication initiation factor 1739 40.65 0 2060620..2062560 - 646 114562927 - Sfri_1752 - hypothetical protein 1740 40.74 0 2062710..2063087 - 125 114562928 - Sfri_1753 - hypothetical protein 1741 42.15 0 2063099..2063461 - 120 114562929 - Sfri_1754 - arsenate reductase 1742 40.75 0 2063553..2065022 - 489 114562930 - Sfri_1755 - peptidase M48, Ste24p 1743 31.98 -2 2065150..2065371 + 73 114562931 - Sfri_1756 - SirA family protein 1744 40.26 0 2065397..2066479 + 360 114562932 - Sfri_1757 - hypothetical protein 1745 35.04 -2 2066751..2066984 - 77 114562933 - Sfri_1758 - hypothetical protein 1746 41.73 0 2067061..2067798 - 245 114562934 - Sfri_1759 - 3-deoxy-manno-octulosonate cytidylyltransferase 1747 42.02 0 2067887..2068957 - 356 114562935 - Sfri_1760 - iron-containing alcohol dehydrogenase 1748 42.03 0 2069029..2070213 - 394 114562936 - Sfri_1761 - DegT/DnrJ/EryC1/StrS aminotransferase 1749 40.33 0 2070383..2070997 - 204 114562937 - Sfri_1762 - carbonate dehydratase 1750 39.10 0 2071107..2071955 - 282 114562938 - Sfri_1763 - alpha/beta hydrolase fold 1751 42.48 0 2071991..2072701 - 236 114562939 - Sfri_1764 - peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 1752 44.53 0 2072692..2073825 - 377 114562940 - Sfri_1765 - succinyl-diaminopimelate desuccinylase 1753 41.81 0 2073825..2074166 - 113 114562941 - Sfri_1766 - hypothetical protein 1754 42.75 0 2074442..2074951 - 169 114562942 - Sfri_1767 - glucose-specific PTS system component 1755 42.49 0 2075030..2076754 - 574 114562943 - Sfri_1768 - phosphoenolpyruvate-protein phosphotransferase 1756 44.57 0 2076767..2077033 - 88 114562944 - Sfri_1769 - phosphocarrier, HPr family protein 1757 40.20 0 2077358..2078974 - 538 114562945 - Sfri_1770 - methyl-accepting chemotaxis sensory transducer 1758 37.27 -1 2079251..2079961 + 236 114562946 - Sfri_1771 - hypothetical protein 1759 42.10 0 2080049..2081086 + 345 114562947 - Sfri_1772 - transcriptional regulator, LacI family protein 1760 42.98 0 2081283..2082215 + 310 114562948 - Sfri_1773 - hypothetical protein 1761 41.41 0 2082381..2082776 - 131 114562949 - Sfri_1774 - hypothetical protein 1762 43.52 0 2082950..2085412 - 820 114562950 - Sfri_1775 - glucan 1,4-alpha-glucosidase 1763 43.91 0 2085470..2087029 - 519 114562951 - Sfri_1776 - major facilitator transporter 1764 44.51 0 2087427..2089520 - 697 114562952 - Sfri_1777 - alpha-glucosidase 1765 40.20 0 2089745..2090341 - 198 114562953 - Sfri_1778 - hypothetical protein 1766 40.51 0 2090743..2091606 - 287 114562954 - Sfri_1779 - hypothetical protein 1767 39.28 0 2091911..2093104 - 397 114562955 - Sfri_1780 - major facilitator transporter 1768 38.11 -1 2093495..2094352 + 285 114562956 - Sfri_1781 - UspA domain-containing protein 1769 40.91 0 2094378..2094575 + 65 114562957 - Sfri_1782 - hypothetical protein 1770 41.98 0 2094854..2095096 + 80 114562958 - Sfri_1783 - hypothetical protein 1771 43.72 0 2095550..2097580 - 676 114562959 - Sfri_1784 - alpha amylase, catalytic region 1772 41.93 0 2097631..2099550 - 639 114562960 - Sfri_1785 - alpha amylase, catalytic region 1773 42.45 0 2099613..2101136 - 507 114562961 - Sfri_1786 - tryptophan halogenase 1774 42.96 0 2101253..2103973 - 906 114562962 - Sfri_1787 - TonB-dependent receptor 1775 42.20 0 2104478..2106112 + 544 114562963 - Sfri_1788 - alpha amylase, catalytic region 1776 42.73 0 2106279..2107544 + 421 114562964 - Sfri_1789 - glucose/galactose transporter 1777 42.47 0 2107849..2109063 + 404 114562965 - Sfri_1790 - Fmu (Sun) domain-containing protein 1778 36.85 -1 2109269..2111542 + 757 114562966 - Sfri_1791 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1779 38.12 -1 2112221..2114476 + 751 114562967 - Sfri_1792 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1780 43.62 0 2114600..2115736 - 378 114562968 - Sfri_1793 - alanine dehydrogenase 1781 37.95 -1 2115898..2116395 + 165 114562969 - Sfri_1794 - leucine-responsive transcriptional regulator 1782 42.90 0 2116668..2119322 + 884 114562970 - Sfri_1795 - cell divisionFtsK/SpoIIIE 1783 40.78 0 2119334..2119978 + 214 114562971 - Sfri_1796 - outer membrane lipoprotein carrier protein LolA 1784 45.72 +1 2119987..2121318 + 443 114562972 - Sfri_1797 - recombination factor protein RarA 1785 36.80 -1 2121311..2121685 + 124 114562973 - Sfri_1798 - CrcB protein 1786 42.35 0 2121704..2122990 + 428 114562974 - Sfri_1799 - seryl-tRNA synthetase 1787 39.82 0 2123475..2123813 - 112 114562975 - Sfri_1800 - DsrC family protein 1788 36.57 -1 2123807..2124115 - 102 114562976 - Sfri_1801 - putative uncharacterized protein involved in oxidation of intracellular sulfur 1789 43.98 0 2124112..2124468 - 118 114562977 - Sfri_1802 - DsrE family protein 1790 42.31 0 2124488..2124877 - 129 114562978 - Sfri_1803 - DsrE family protein 1791 40.00 0 2124943..2125602 - 219 114562979 - Sfri_1804 - hypothetical protein 1792 43.41 0 2125820..2126722 - 300 114562980 - Sfri_1805 - putative DNA-binding transcriptional regulator 1793 42.48 0 2127797..2128474 + 225 114562981 - Sfri_1806 - hypothetical protein 1794 43.43 0 2128486..2130168 + 560 114562982 - Sfri_1807 - hypothetical protein 1795 42.20 0 2130914..2132458 + 514 114562983 - Sfri_1808 - methyl-accepting chemotaxis sensory transducer 1796 40.35 0 2133187..2134767 + 526 114562984 - Sfri_1809 - choline/carnitine/betaine transporter 1797 37.10 -1 2134885..2135601 - 238 114562985 - Sfri_1810 - DNA polymerase III subunit epsilon 1798 39.72 0 2135612..2137489 - 625 114562986 - Sfri_1811 - cyclic nucleotide-binding protein 1799 46.19 +1 2137928..2139133 - 401 114562987 - Sfri_1812 - hypothetical protein 1800 48.10 +1 2139133..2139843 - 236 114562988 - Sfri_1813 - ABC transporter related 1801 44.34 0 2139852..2141150 - 432 114562989 - Sfri_1814 - RND family efflux transporter MFP subunit 1802 42.90 0 2141736..2142707 + 323 114562990 - Sfri_1815 - heat shock protein DnaJ domain-containing protein 1803 42.14 0 2142710..2143027 + 105 114562991 - Sfri_1816 - hypothetical protein 1804 43.91 0 2143466..2144704 + 412 114562992 - Sfri_1817 - glycine betaine/L-proline ABC transporter, ATPase subunit 1805 45.77 +1 2144731..2145582 + 283 114562993 - Sfri_1818 - binding-protein-dependent transport systems inner membrane component 1806 44.44 0 2145579..2146613 + 344 114562994 proX Sfri_1819 - glycine betaine transporter periplasmic subunit 1807 44.54 0 2146961..2147995 + 344 114562995 proX Sfri_1820 - glycine betaine transporter periplasmic subunit 1808 43.32 0 2148238..2149419 - 393 114562996 - Sfri_1821 - carbohydrate kinase, YjeF related protein 1809 38.82 -1 2149707..2150837 + 376 114562997 - Sfri_1822 - hypothetical protein 1810 39.16 0 2150912..2152129 - 405 114562998 - Sfri_1823 - metal dependent phosphohydrolase 1811 41.86 0 2152471..2153256 - 261 114562999 - Sfri_1824 - extradiol ring-cleavage dioxygenase III subunit B 1812 40.61 0 2153334..2154281 - 315 114563000 - Sfri_1825 - transcriptional regulator, LysR family protein 1813 38.50 -1 2154308..2154733 + 141 114563001 - Sfri_1826 - transmembrane pair domain-containing protein 1814 45.37 +1 2154866..2155297 + 143 114563002 - Sfri_1827 - hypothetical protein 1815 36.56 -1 2156065..2156715 + 216 114563003 - Sfri_1828 - two component transcriptional regulator, LuxR family protein 1816 37.72 -1 2156724..2160281 - 1185 114563004 - Sfri_1829 - periplasmic sensor hybrid histidine kinase 1817 39.51 0 2161654..2162463 + 269 114563005 - Sfri_1831 - ABC transporter related 1818 40.50 0 2162463..2164430 + 655 114563006 - Sfri_1832 - AMP-dependent synthetase and ligase 1819 37.92 -1 2164427..2165320 + 297 114563007 - Sfri_1833 - inner-membrane translocator 1820 39.66 0 2165417..2166490 + 357 114563008 - Sfri_1834 - inner-membrane translocator 1821 41.43 0 2166579..2167826 + 415 114563009 - Sfri_1835 - putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein 1822 39.42 0 2167927..2168748 + 273 114563010 - Sfri_1836 - ABC transporter related 1823 39.98 0 2168811..2170088 + 425 114563011 - Sfri_1837 - putative phenylacetate-coenzyme A ligase 1824 42.22 0 2170446..2170940 + 164 114563012 - Sfri_1838 - thioesterase superfamily protein 1825 45.10 0 2171480..2171938 + 152 114563013 - Sfri_1839 - hypothetical protein 1826 42.46 0 2172379..2172849 + 156 114563014 - Sfri_1840 - Ferritin, Dps family protein 1827 40.31 0 2173025..2173612 - 195 114563015 - Sfri_1841 - transcriptional regulator, TetR family protein 1828 44.78 0 2174016..2175422 - 468 114563016 - Sfri_1842 - amino acid carrier protein 1829 43.30 0 2175813..2177186 + 457 114563017 - Sfri_1843 - periplasmic sensor signal transduction histidine kinase 1830 46.59 +1 2177207..2177749 + 180 114563018 - Sfri_1844 - response regulator receiver protein 1831 39.53 0 2178319..2179512 + 397 114563019 - Sfri_1845 - transposase, IS4 family protein 1832 31.08 -2 2179865..2182477 - 870 114563020 - Sfri_1847 - hypothetical protein 1833 32.75 -2 2182479..2184032 - 517 114563021 - Sfri_1848 - hypothetical protein 1834 49.06 +2 2184907..2186667 + 586 114563022 - Sfri_1849 - hypothetical protein 1835 44.85 0 2186928..2187578 + 216 114563023 - Sfri_1850 - hypothetical protein 1836 43.83 0 2187571..2188389 + 272 114563024 - Sfri_1851 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0