IslandPathversion 1.0

IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.09 STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1737	 39.80	0	2058544..2059641	+	365	114562925	-	Sfri_1750	-	hypothetical protein
1738	 41.77	0	2059795..2060505	+	236	114562926	-	Sfri_1751	-	DNA replication initiation factor
1739	 40.65	0	2060620..2062560	-	646	114562927	-	Sfri_1752	-	hypothetical protein
1740	 40.74	0	2062710..2063087	-	125	114562928	-	Sfri_1753	-	hypothetical protein
1741	 42.15	0	2063099..2063461	-	120	114562929	-	Sfri_1754	-	arsenate reductase
1742	 40.75	0	2063553..2065022	-	489	114562930	-	Sfri_1755	-	peptidase M48, Ste24p
1743	 31.98	-2	2065150..2065371	+	73	114562931	-	Sfri_1756	-	SirA family protein
1744	 40.26	0	2065397..2066479	+	360	114562932	-	Sfri_1757	-	hypothetical protein
1745	 35.04	-2	2066751..2066984	-	77	114562933	-	Sfri_1758	-	hypothetical protein
1746	 41.73	0	2067061..2067798	-	245	114562934	-	Sfri_1759	-	3-deoxy-manno-octulosonate cytidylyltransferase
1747	 42.02	0	2067887..2068957	-	356	114562935	-	Sfri_1760	-	iron-containing alcohol dehydrogenase
1748	 42.03	0	2069029..2070213	-	394	114562936	-	Sfri_1761	-	DegT/DnrJ/EryC1/StrS aminotransferase
1749	 40.33	0	2070383..2070997	-	204	114562937	-	Sfri_1762	-	carbonate dehydratase
1750	 39.10	0	2071107..2071955	-	282	114562938	-	Sfri_1763	-	alpha/beta hydrolase fold
1751	 42.48	0	2071991..2072701	-	236	114562939	-	Sfri_1764	-	peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
1752	 44.53	0	2072692..2073825	-	377	114562940	-	Sfri_1765	-	succinyl-diaminopimelate desuccinylase
1753	 41.81	0	2073825..2074166	-	113	114562941	-	Sfri_1766	-	hypothetical protein
1754	 42.75	0	2074442..2074951	-	169	114562942	-	Sfri_1767	-	glucose-specific PTS system component
1755	 42.49	0	2075030..2076754	-	574	114562943	-	Sfri_1768	-	phosphoenolpyruvate-protein phosphotransferase
1756	 44.57	0	2076767..2077033	-	88	114562944	-	Sfri_1769	-	phosphocarrier, HPr family protein
1757	 40.20	0	2077358..2078974	-	538	114562945	-	Sfri_1770	-	methyl-accepting chemotaxis sensory transducer
1758	 37.27	-1	2079251..2079961	+	236	114562946	-	Sfri_1771	-	hypothetical protein
1759	 42.10	0	2080049..2081086	+	345	114562947	-	Sfri_1772	-	transcriptional regulator, LacI family protein
1760	 42.98	0	2081283..2082215	+	310	114562948	-	Sfri_1773	-	hypothetical protein
1761	 41.41	0	2082381..2082776	-	131	114562949	-	Sfri_1774	-	hypothetical protein
1762	 43.52	0	2082950..2085412	-	820	114562950	-	Sfri_1775	-	glucan 1,4-alpha-glucosidase
1763	 43.91	0	2085470..2087029	-	519	114562951	-	Sfri_1776	-	major facilitator transporter
1764	 44.51	0	2087427..2089520	-	697	114562952	-	Sfri_1777	-	alpha-glucosidase
1765	 40.20	0	2089745..2090341	-	198	114562953	-	Sfri_1778	-	hypothetical protein
1766	 40.51	0	2090743..2091606	-	287	114562954	-	Sfri_1779	-	hypothetical protein
1767	 39.28	0	2091911..2093104	-	397	114562955	-	Sfri_1780	-	major facilitator transporter
1768	 38.11	-1	2093495..2094352	+	285	114562956	-	Sfri_1781	-	UspA domain-containing protein
1769	 40.91	0	2094378..2094575	+	65	114562957	-	Sfri_1782	-	hypothetical protein
1770	 41.98	0	2094854..2095096	+	80	114562958	-	Sfri_1783	-	hypothetical protein
1771	 43.72	0	2095550..2097580	-	676	114562959	-	Sfri_1784	-	alpha amylase, catalytic region
1772	 41.93	0	2097631..2099550	-	639	114562960	-	Sfri_1785	-	alpha amylase, catalytic region
1773	 42.45	0	2099613..2101136	-	507	114562961	-	Sfri_1786	-	tryptophan halogenase
1774	 42.96	0	2101253..2103973	-	906	114562962	-	Sfri_1787	-	TonB-dependent receptor
1775	 42.20	0	2104478..2106112	+	544	114562963	-	Sfri_1788	-	alpha amylase, catalytic region
1776	 42.73	0	2106279..2107544	+	421	114562964	-	Sfri_1789	-	glucose/galactose transporter
1777	 42.47	0	2107849..2109063	+	404	114562965	-	Sfri_1790	-	Fmu (Sun) domain-containing protein
1778	 36.85	-1	2109269..2111542	+	757	114562966	-	Sfri_1791	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1779	 38.12	-1	2112221..2114476	+	751	114562967	-	Sfri_1792	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1780	 43.62	0	2114600..2115736	-	378	114562968	-	Sfri_1793	-	alanine dehydrogenase
1781	 37.95	-1	2115898..2116395	+	165	114562969	-	Sfri_1794	-	leucine-responsive transcriptional regulator
1782	 42.90	0	2116668..2119322	+	884	114562970	-	Sfri_1795	-	cell divisionFtsK/SpoIIIE
1783	 40.78	0	2119334..2119978	+	214	114562971	-	Sfri_1796	-	outer membrane lipoprotein carrier protein LolA
1784	 45.72	+1	2119987..2121318	+	443	114562972	-	Sfri_1797	-	recombination factor protein RarA
1785	 36.80	-1	2121311..2121685	+	124	114562973	-	Sfri_1798	-	CrcB protein
1786	 42.35	0	2121704..2122990	+	428	114562974	-	Sfri_1799	-	seryl-tRNA synthetase
1787	 39.82	0	2123475..2123813	-	112	114562975	-	Sfri_1800	-	DsrC family protein
1788	 36.57	-1	2123807..2124115	-	102	114562976	-	Sfri_1801	-	putative uncharacterized protein involved in oxidation of intracellular sulfur
1789	 43.98	0	2124112..2124468	-	118	114562977	-	Sfri_1802	-	DsrE family protein
1790	 42.31	0	2124488..2124877	-	129	114562978	-	Sfri_1803	-	DsrE family protein
1791	 40.00	0	2124943..2125602	-	219	114562979	-	Sfri_1804	-	hypothetical protein
1792	 43.41	0	2125820..2126722	-	300	114562980	-	Sfri_1805	-	putative DNA-binding transcriptional regulator
1793	 42.48	0	2127797..2128474	+	225	114562981	-	Sfri_1806	-	hypothetical protein
1794	 43.43	0	2128486..2130168	+	560	114562982	-	Sfri_1807	-	hypothetical protein
1795	 42.20	0	2130914..2132458	+	514	114562983	-	Sfri_1808	-	methyl-accepting chemotaxis sensory transducer
1796	 40.35	0	2133187..2134767	+	526	114562984	-	Sfri_1809	-	choline/carnitine/betaine transporter
1797	 37.10	-1	2134885..2135601	-	238	114562985	-	Sfri_1810	-	DNA polymerase III subunit epsilon
1798	 39.72	0	2135612..2137489	-	625	114562986	-	Sfri_1811	-	cyclic nucleotide-binding protein
1799	 46.19	+1	2137928..2139133	-	401	114562987	-	Sfri_1812	-	hypothetical protein
1800	 48.10	+1	2139133..2139843	-	236	114562988	-	Sfri_1813	-	ABC transporter related
1801	 44.34	0	2139852..2141150	-	432	114562989	-	Sfri_1814	-	RND family efflux transporter MFP subunit
1802	 42.90	0	2141736..2142707	+	323	114562990	-	Sfri_1815	-	heat shock protein DnaJ domain-containing protein
1803	 42.14	0	2142710..2143027	+	105	114562991	-	Sfri_1816	-	hypothetical protein
1804	 43.91	0	2143466..2144704	+	412	114562992	-	Sfri_1817	-	glycine betaine/L-proline ABC transporter, ATPase subunit
1805	 45.77	+1	2144731..2145582	+	283	114562993	-	Sfri_1818	-	binding-protein-dependent transport systems inner membrane component
1806	 44.44	0	2145579..2146613	+	344	114562994	proX	Sfri_1819	-	glycine betaine transporter periplasmic subunit
1807	 44.54	0	2146961..2147995	+	344	114562995	proX	Sfri_1820	-	glycine betaine transporter periplasmic subunit
1808	 43.32	0	2148238..2149419	-	393	114562996	-	Sfri_1821	-	carbohydrate kinase, YjeF related protein
1809	 38.82	-1	2149707..2150837	+	376	114562997	-	Sfri_1822	-	hypothetical protein
1810	 39.16	0	2150912..2152129	-	405	114562998	-	Sfri_1823	-	metal dependent phosphohydrolase
1811	 41.86	0	2152471..2153256	-	261	114562999	-	Sfri_1824	-	extradiol ring-cleavage dioxygenase III subunit B
1812	 40.61	0	2153334..2154281	-	315	114563000	-	Sfri_1825	-	transcriptional regulator, LysR family protein
1813	 38.50	-1	2154308..2154733	+	141	114563001	-	Sfri_1826	-	transmembrane pair domain-containing protein
1814	 45.37	+1	2154866..2155297	+	143	114563002	-	Sfri_1827	-	hypothetical protein
1815	 36.56	-1	2156065..2156715	+	216	114563003	-	Sfri_1828	-	two component transcriptional regulator, LuxR family protein
1816	 37.72	-1	2156724..2160281	-	1185	114563004	-	Sfri_1829	-	periplasmic sensor hybrid histidine kinase
1817	 39.51	0	2161654..2162463	+	269	114563005	-	Sfri_1831	-	ABC transporter related
1818	 40.50	0	2162463..2164430	+	655	114563006	-	Sfri_1832	-	AMP-dependent synthetase and ligase
1819	 37.92	-1	2164427..2165320	+	297	114563007	-	Sfri_1833	-	inner-membrane translocator
1820	 39.66	0	2165417..2166490	+	357	114563008	-	Sfri_1834	-	inner-membrane translocator
1821	 41.43	0	2166579..2167826	+	415	114563009	-	Sfri_1835	-	putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein
1822	 39.42	0	2167927..2168748	+	273	114563010	-	Sfri_1836	-	ABC transporter related
1823	 39.98	0	2168811..2170088	+	425	114563011	-	Sfri_1837	-	putative phenylacetate-coenzyme A ligase
1824	 42.22	0	2170446..2170940	+	164	114563012	-	Sfri_1838	-	thioesterase superfamily protein
1825	 45.10	0	2171480..2171938	+	152	114563013	-	Sfri_1839	-	hypothetical protein
1826	 42.46	0	2172379..2172849	+	156	114563014	-	Sfri_1840	-	Ferritin, Dps family protein
1827	 40.31	0	2173025..2173612	-	195	114563015	-	Sfri_1841	-	transcriptional regulator, TetR family protein
1828	 44.78	0	2174016..2175422	-	468	114563016	-	Sfri_1842	-	amino acid carrier protein
1829	 43.30	0	2175813..2177186	+	457	114563017	-	Sfri_1843	-	periplasmic sensor signal transduction histidine kinase
1830	 46.59	+1	2177207..2177749	+	180	114563018	-	Sfri_1844	-	response regulator receiver protein
1831	 39.53	0	2178319..2179512	+	397	114563019	-	Sfri_1845	-	transposase, IS4 family protein
1832	 31.08	-2	2179865..2182477	-	870	114563020	-	Sfri_1847	-	hypothetical protein
1833	 32.75	-2	2182479..2184032	-	517	114563021	-	Sfri_1848	-	hypothetical protein
1834	 49.06	+2	2184907..2186667	+	586	114563022	-	Sfri_1849	-	hypothetical protein
1835	 44.85	0	2186928..2187578	+	216	114563023	-	Sfri_1850	-	hypothetical protein
1836	 43.83	0	2187571..2188389	+	272	114563024	-	Sfri_1851	-	hypothetical protein
42.09	MEAN

3.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.