version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1695 41.06 0 2014985..2015968 + 327 114562883 pheS Sfri_1708 - phenylalanyl-tRNA synthetase subunit alpha 1696 44.72 0 2015984..2018371 + 795 114562884 pheT Sfri_1709 - phenylalanyl-tRNA synthetase subunit beta 1697 44.33 0 2018375..2018674 + 99 114562885 - Sfri_1710 - integration host factor, alpha subunit 1698 40.37 0 2018945..2019925 + 326 114562886 - Sfri_1711 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1699 40.18 0 2019974..2020849 + 291 114562887 - Sfri_1712 - MscS mechanosensitive ion channel 1700 41.71 0 2020912..2021532 - 206 114562888 - Sfri_1713 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 1701 45.09 0 2021591..2022364 - 257 114562889 - Sfri_1714 - imidazole glycerol phosphate synthase subunit HisF 1702 45.93 +1 2022346..2023083 - 245 114562890 - Sfri_1715 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1703 45.25 +1 2023080..2023742 - 220 114562891 hisH Sfri_1716 - imidazole glycerol phosphate synthase subunit HisH 1704 45.04 0 2023752..2024819 - 355 114562892 - Sfri_1717 - imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1705 42.76 0 2024893..2025942 - 349 114562893 - Sfri_1718 - histidinol-phosphate aminotransferase 1706 45.19 0 2026019..2027308 - 429 114562894 - Sfri_1719 - histidinol dehydrogenase 1707 42.78 0 2027314..2028213 - 299 114562895 hisG Sfri_1720 - ATP phosphoribosyltransferase 1708 39.55 0 2029046..2029930 + 294 114562896 - Sfri_1721 - diguanylate cyclase with PAS/PAC sensor 1709 35.20 -2 2030121..2030495 + 124 114562897 - Sfri_1722 - putative transcriptional regulator, fis family protein 1710 40.76 0 2030550..2031101 - 183 114562898 - Sfri_1723 - twin-arginine translocation pathway signal 1711 39.29 0 2031264..2032607 - 447 114562899 - Sfri_1724 - hypothetical protein 1712 42.70 0 2032957..2033970 + 337 114562900 - Sfri_1725 - permease 1713 40.26 0 2033987..2034217 + 76 114562901 - Sfri_1726 - thiol-disulfide isomerase and thioredoxins 1714 42.47 0 2034612..2036537 + 641 114562902 - Sfri_1727 - helicase c2 1715 46.01 +1 2036611..2037312 + 233 114562903 - Sfri_1728 - peptidase M22, glycoprotease 1716 42.73 0 2037372..2037701 + 109 114562904 - Sfri_1729 - hypothetical protein 1717 39.82 0 2037694..2038371 + 225 114562905 - Sfri_1730 - hypothetical protein 1718 40.51 0 2038368..2039231 + 287 114562906 - Sfri_1731 - hypothetical protein 1719 42.17 0 2039253..2040146 + 297 114562907 - Sfri_1732 - alpha/beta hydrolase fold 1720 40.86 0 2040345..2042018 + 557 114562908 - Sfri_1733 - long-chain-fatty-acid--CoA ligase 1721 40.43 0 2042108..2043220 + 370 114562909 - Sfri_1734 - ribonuclease D 1722 37.55 -1 2043323..2043583 - 86 114562910 - Sfri_1735 - cell division topological specificity factor MinE 1723 40.99 0 2043586..2044395 - 269 114562911 - Sfri_1736 - septum site-determining protein MinD 1724 40.84 0 2044423..2045088 - 221 114562912 - Sfri_1737 - septum site-determining protein MinC 1725 34.05 -2 2045207..2045485 + 92 114562913 - Sfri_1738 - hypothetical protein 1726 38.80 -1 2045517..2046485 + 322 114562914 - Sfri_1739 - membrane-bound lytic murein transglycosylase 1727 42.95 0 2046548..2046994 + 148 114562915 - Sfri_1740 - hypothetical protein 1728 42.55 0 2047065..2047574 - 169 114562916 - Sfri_1741 - disulphide bond formation protein DsbB 1729 41.59 0 2047688..2049274 - 528 114562917 nhaB Sfri_1742 - sodium/proton antiporter 1730 38.47 -1 2049865..2050584 + 239 114562918 - Sfri_1743 - fatty acid metabolism regulator 1731 39.82 0 2050676..2052217 - 513 114562919 - Sfri_1744 - hypothetical protein 1732 40.84 0 2052227..2053492 - 421 114562920 - Sfri_1745 - hypothetical protein 1733 39.28 0 2053556..2055490 - 644 114562921 - Sfri_1746 - putative serine protein kinase, PrkA 1734 40.17 0 2055788..2056372 - 194 114562922 - Sfri_1747 - superoxide dismutase 1735 38.60 -1 2056608..2056949 + 113 114562923 - Sfri_1748 - glutaredoxin-like protein 1736 43.90 0 2057076..2058305 - 409 114562924 - Sfri_1749 - uracil-xanthine permease 1737 39.80 0 2058544..2059641 + 365 114562925 - Sfri_1750 - hypothetical protein 1738 41.77 0 2059795..2060505 + 236 114562926 - Sfri_1751 - DNA replication initiation factor 1739 40.65 0 2060620..2062560 - 646 114562927 - Sfri_1752 - hypothetical protein 1740 40.74 0 2062710..2063087 - 125 114562928 - Sfri_1753 - hypothetical protein 1741 42.15 0 2063099..2063461 - 120 114562929 - Sfri_1754 - arsenate reductase 1742 40.75 0 2063553..2065022 - 489 114562930 - Sfri_1755 - peptidase M48, Ste24p 1743 31.98 -2 2065150..2065371 + 73 114562931 - Sfri_1756 - SirA family protein 1744 40.26 0 2065397..2066479 + 360 114562932 - Sfri_1757 - hypothetical protein 1745 35.04 -2 2066751..2066984 - 77 114562933 - Sfri_1758 - hypothetical protein 1746 41.73 0 2067061..2067798 - 245 114562934 - Sfri_1759 - 3-deoxy-manno-octulosonate cytidylyltransferase 1747 42.02 0 2067887..2068957 - 356 114562935 - Sfri_1760 - iron-containing alcohol dehydrogenase 1748 42.03 0 2069029..2070213 - 394 114562936 - Sfri_1761 - DegT/DnrJ/EryC1/StrS aminotransferase 1749 40.33 0 2070383..2070997 - 204 114562937 - Sfri_1762 - carbonate dehydratase 1750 39.10 0 2071107..2071955 - 282 114562938 - Sfri_1763 - alpha/beta hydrolase fold 1751 42.48 0 2071991..2072701 - 236 114562939 - Sfri_1764 - peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 1752 44.53 0 2072692..2073825 - 377 114562940 - Sfri_1765 - succinyl-diaminopimelate desuccinylase 1753 41.81 0 2073825..2074166 - 113 114562941 - Sfri_1766 - hypothetical protein 1754 42.75 0 2074442..2074951 - 169 114562942 - Sfri_1767 - glucose-specific PTS system component 1755 42.49 0 2075030..2076754 - 574 114562943 - Sfri_1768 - phosphoenolpyruvate-protein phosphotransferase 1756 44.57 0 2076767..2077033 - 88 114562944 - Sfri_1769 - phosphocarrier, HPr family protein 1757 40.20 0 2077358..2078974 - 538 114562945 - Sfri_1770 - methyl-accepting chemotaxis sensory transducer 1758 37.27 -1 2079251..2079961 + 236 114562946 - Sfri_1771 - hypothetical protein 1759 42.10 0 2080049..2081086 + 345 114562947 - Sfri_1772 - transcriptional regulator, LacI family protein 1760 42.98 0 2081283..2082215 + 310 114562948 - Sfri_1773 - hypothetical protein 1761 41.41 0 2082381..2082776 - 131 114562949 - Sfri_1774 - hypothetical protein 1762 43.52 0 2082950..2085412 - 820 114562950 - Sfri_1775 - glucan 1,4-alpha-glucosidase 1763 43.91 0 2085470..2087029 - 519 114562951 - Sfri_1776 - major facilitator transporter 1764 44.51 0 2087427..2089520 - 697 114562952 - Sfri_1777 - alpha-glucosidase 1765 40.20 0 2089745..2090341 - 198 114562953 - Sfri_1778 - hypothetical protein 1766 40.51 0 2090743..2091606 - 287 114562954 - Sfri_1779 - hypothetical protein 1767 39.28 0 2091911..2093104 - 397 114562955 - Sfri_1780 - major facilitator transporter 1768 38.11 -1 2093495..2094352 + 285 114562956 - Sfri_1781 - UspA domain-containing protein 1769 40.91 0 2094378..2094575 + 65 114562957 - Sfri_1782 - hypothetical protein 1770 41.98 0 2094854..2095096 + 80 114562958 - Sfri_1783 - hypothetical protein 1771 43.72 0 2095550..2097580 - 676 114562959 - Sfri_1784 - alpha amylase, catalytic region 1772 41.93 0 2097631..2099550 - 639 114562960 - Sfri_1785 - alpha amylase, catalytic region 1773 42.45 0 2099613..2101136 - 507 114562961 - Sfri_1786 - tryptophan halogenase 1774 42.96 0 2101253..2103973 - 906 114562962 - Sfri_1787 - TonB-dependent receptor 1775 42.20 0 2104478..2106112 + 544 114562963 - Sfri_1788 - alpha amylase, catalytic region 1776 42.73 0 2106279..2107544 + 421 114562964 - Sfri_1789 - glucose/galactose transporter 1777 42.47 0 2107849..2109063 + 404 114562965 - Sfri_1790 - Fmu (Sun) domain-containing protein 1778 36.85 -1 2109269..2111542 + 757 114562966 - Sfri_1791 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1779 38.12 -1 2112221..2114476 + 751 114562967 - Sfri_1792 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1780 43.62 0 2114600..2115736 - 378 114562968 - Sfri_1793 - alanine dehydrogenase 1781 37.95 -1 2115898..2116395 + 165 114562969 - Sfri_1794 - leucine-responsive transcriptional regulator 1782 42.90 0 2116668..2119322 + 884 114562970 - Sfri_1795 - cell divisionFtsK/SpoIIIE 1783 40.78 0 2119334..2119978 + 214 114562971 - Sfri_1796 - outer membrane lipoprotein carrier protein LolA 1784 45.72 +1 2119987..2121318 + 443 114562972 - Sfri_1797 - recombination factor protein RarA 1785 36.80 -1 2121311..2121685 + 124 114562973 - Sfri_1798 - CrcB protein 1786 42.35 0 2121704..2122990 + 428 114562974 - Sfri_1799 - seryl-tRNA synthetase 1787 39.82 0 2123475..2123813 - 112 114562975 - Sfri_1800 - DsrC family protein 1788 36.57 -1 2123807..2124115 - 102 114562976 - Sfri_1801 - putative uncharacterized protein involved in oxidation of intracellular sulfur 1789 43.98 0 2124112..2124468 - 118 114562977 - Sfri_1802 - DsrE family protein 1790 42.31 0 2124488..2124877 - 129 114562978 - Sfri_1803 - DsrE family protein 1791 40.00 0 2124943..2125602 - 219 114562979 - Sfri_1804 - hypothetical protein 1792 43.41 0 2125820..2126722 - 300 114562980 - Sfri_1805 - putative DNA-binding transcriptional regulator 1793 42.48 0 2127797..2128474 + 225 114562981 - Sfri_1806 - hypothetical protein 1794 43.43 0 2128486..2130168 + 560 114562982 - Sfri_1807 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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