version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 89 38.89 -1 103294..103815 + 173 114561277 - Sfri_0089 - hypothetical protein 90 40.50 0 103823..104506 + 227 114561278 - Sfri_0090 - two component transcriptional regulator, winged helix family protein 91 42.83 0 104574..105815 + 413 114561279 - Sfri_0091 - periplasmic sensor signal transduction histidine kinase 92 41.30 0 105856..106533 + 225 114561280 - Sfri_0092 - pseudouridine synthase Rlu family protein 93 38.72 -1 106610..107890 - 426 114561281 - Sfri_0093 - diguanylate cyclase 94 33.33 -2 107995..108162 + 55 114561282 - Sfri_0094 - hypothetical protein 95 43.00 0 108277..108483 + 68 114561283 - Sfri_0095 - hypothetical protein 96 42.67 0 108516..109286 - 256 114561284 - Sfri_0096 - molybdopterin biosynthesis protein MoeB 97 43.22 0 109294..110547 - 417 114561285 - Sfri_0097 - molybdenum cofactor synthesis domain-containing protein 98 38.58 -1 110654..110977 + 107 114561286 - Sfri_0098 - excinuclease ABC subunit C 99 41.28 0 111080..111973 + 297 114561287 - Sfri_0099 - hypothetical protein 100 43.23 0 112015..113874 - 619 114561288 - Sfri_0100 - peptidase M14, carboxypeptidase A 101 45.40 +1 114063..115604 - 513 114561289 - Sfri_0101 - phosphoenolpyruvate carboxykinase 102 41.23 0 115874..116734 - 286 114561290 hslO Sfri_0102 - Hsp33-like chaperonin 103 41.60 0 116760..117158 - 132 114561291 - Sfri_0103 - RNA-binding S4 domain-containing protein 104 41.86 0 117423..118337 + 304 114561292 - Sfri_0104 - general secretion pathway protein C 105 42.99 0 118362..120494 + 710 114561293 - Sfri_0105 - general secretion pathway protein D 106 43.11 0 120502..122046 + 514 114561294 - Sfri_0106 - general secretory pathway protein E 107 45.99 +1 122050..123282 + 410 114561295 - Sfri_0107 - general secretion pathway protein F 108 40.00 0 123379..123813 + 144 114561296 - Sfri_0108 - general secretion pathway protein G 109 41.54 0 123815..124387 + 190 114561297 - Sfri_0109 - general secretion pathway protein H 110 43.38 0 124380..124817 + 145 114561298 - Sfri_0110 - general secretion pathway protein I 111 43.32 0 124798..125508 + 236 114561299 - Sfri_0111 - general secretion pathway protein J 112 42.76 0 125508..126494 + 328 114561300 - Sfri_0112 - general secretion pathway protein K 113 42.79 0 126546..127751 + 401 114561301 - Sfri_0113 - general secretion pathway protein L 114 43.82 0 127753..128229 + 158 114561302 - Sfri_0114 - general secretion pathway M protein 115 40.68 0 128239..129000 + 253 114561303 - Sfri_0115 - type II secretion system protein N 116 41.44 0 129169..129834 - 221 114561304 - Sfri_0116 - HAD family hydrolase 117 41.50 0 129912..130499 + 195 114561305 nudE Sfri_0117 - ADP-ribose diphosphatase NudE 118 42.35 0 130616..131425 + 269 114561306 - Sfri_0118 - 3'(2'),5'-bisphosphate nucleotidase 119 40.24 0 131666..132766 - 366 114561307 - Sfri_0119 - tRNA 2-selenouridine synthase 120 44.79 0 132766..133821 - 351 114561308 - Sfri_0120 - selenide, water dikinase 121 40.81 0 134018..134632 + 204 114561309 - Sfri_0121 - putative transcriptional regulator, TetR family protein 122 41.84 0 134619..136475 + 618 114561310 - Sfri_0122 - phospholipid/glycerol acyltransferase 123 40.54 0 136557..137666 - 369 114561311 - Sfri_0123 - stearoyl-CoA 9-desaturase 124 45.31 +1 137823..138440 + 205 114561312 - Sfri_0124 - DNA-binding transcriptional repressor FabR 125 39.34 0 138520..139617 - 365 114561313 - Sfri_0125 - tRNA (uracil-5-)-methyltransferase 126 39.62 0 139747..140526 + 259 114561314 - Sfri_0126 - glutamate racemase 127 42.12 0 140574..141017 - 147 114561315 - Sfri_0127 - RNP-1 like RNA-binding protein 128 31.75 -2 147215..147340 + 41 114561316 - Sfri_0128 - hypothetical protein 129 45.88 +1 147337..147870 - 177 114561317 - Sfri_0129 - ISSod10, transposase OrfB 130 40.42 0 147884..148363 - 159 114561318 - Sfri_0130 - ISSod10, transposase OrfA 131 38.74 -1 148584..149600 + 338 114561319 - Sfri_0131 - UDP-N-acetylenolpyruvoylglucosamine reductase 132 39.46 0 149597..150559 + 320 114561320 - Sfri_0132 - biotin--protein ligase 133 40.17 0 150596..151546 - 316 114561321 - Sfri_0133 - pantothenate kinase 134 44.81 0 152246..153430 + 394 114561322 - Sfri_0134 - elongation factor Tu 135 41.67 0 153699..154070 + 123 114561323 secE Sfri_0135 - preprotein translocase subunit SecE 136 41.30 0 154081..154632 + 183 114561324 - Sfri_0136 - NusG antitermination factor 137 41.96 0 154762..155190 + 142 114561325 rplK Sfri_0137 - 50S ribosomal protein L11 138 42.88 0 155195..155896 + 233 114561326 rplA Sfri_0138 - 50S ribosomal protein L1 139 46.51 +1 156173..156673 + 166 114561327 rplJ Sfri_0139 - 50S ribosomal protein L10 140 42.90 0 156728..157093 + 121 114561328 - Sfri_0140 - ribosomal protein L7/L12 141 43.03 0 157329..161360 + 1343 114561329 - Sfri_0141 - DNA-directed RNA polymerase, beta subunit 142 44.36 0 161443..165669 + 1408 114561330 - Sfri_0142 - DNA-directed RNA polymerase subunit beta' 143 47.73 +1 165847..166221 + 124 114561331 rpsL Sfri_0143 - 30S ribosomal protein S12 144 45.44 +1 166304..166774 + 156 114561332 - Sfri_0144 - 30S ribosomal protein S7 145 44.35 0 166853..168949 + 698 114561333 - Sfri_0145 - elongation factor G 146 44.64 0 169019..170203 + 394 114561334 - Sfri_0146 - elongation factor Tu 147 44.87 0 170557..170868 + 103 114561335 - Sfri_0147 - ribosomal protein S10 148 45.23 +1 170896..171534 + 212 114561336 rplC Sfri_0148 - 50S ribosomal protein L3 149 45.87 +1 171552..172157 + 201 114561337 rplD Sfri_0149 - 50S ribosomal protein L4 150 42.90 0 172154..172456 + 100 114561338 rplW Sfri_0150 - 50S ribosomal protein L23 151 48.85 +2 172473..173297 + 274 114561339 rplB Sfri_0151 - 50S ribosomal protein L2 152 47.31 +1 173312..173590 + 92 114561340 rpsS Sfri_0152 - 30S ribosomal protein S19 153 47.75 +1 173606..173938 + 110 114561341 rplV Sfri_0153 - 50S ribosomal protein L22 154 45.36 +1 173951..174640 + 229 114561342 rpsC Sfri_0154 - 30S ribosomal protein S3 155 46.23 +1 174652..175062 + 136 114561343 rplP Sfri_0155 - 50S ribosomal protein L16 156 43.23 0 175062..175253 + 63 114561344 - Sfri_0156 - 50S ribosomal protein L29 157 39.36 0 175253..175501 + 82 114561345 - Sfri_0157 - ribosomal protein S17 158 47.15 +1 175678..176046 + 122 114561346 rplN Sfri_0158 - 50S ribosomal protein L14 159 43.17 0 176057..176371 + 104 114561347 rplX Sfri_0159 - 50S ribosomal protein L24 160 43.33 0 176385..176924 + 179 114561348 rplE Sfri_0160 - 50S ribosomal protein L5 161 47.06 +1 176935..177240 + 101 114561349 rpsN Sfri_0161 - 30S ribosomal protein S14 162 45.29 +1 177265..177657 + 130 114561350 rpsH Sfri_0162 - 30S ribosomal protein S8 163 44.19 0 177668..178201 + 177 114561351 rplF Sfri_0163 - 50S ribosomal protein L6 164 49.29 +2 178212..178562 + 116 114561352 rplR Sfri_0164 - 50S ribosomal protein L18 165 45.63 +1 178575..179078 + 167 114561353 rpsE Sfri_0165 - 30S ribosomal protein S5 166 41.80 0 179085..179273 + 62 114561354 - Sfri_0166 - ribosomal protein L30 167 47.36 +1 179273..179707 + 144 114561355 rplO Sfri_0167 - 50S ribosomal protein L15 168 42.80 0 179715..181055 + 446 114561356 secY Sfri_0168 - preprotein translocase subunit SecY 169 42.11 0 181079..181192 + 37 114561357 rpmJ Sfri_0169 - 50S ribosomal protein L36 170 46.78 +1 181309..181665 + 118 114561358 rpsM Sfri_0170 - 30S ribosomal protein S13 171 48.85 +2 181683..182075 + 130 114561359 - Sfri_0171 - 30S ribosomal protein S11 172 44.61 0 182108..182728 + 206 114561360 rpsD Sfri_0172 - 30S ribosomal protein S4 173 45.66 +1 182753..183742 + 329 114561361 - Sfri_0173 - DNA-directed RNA polymerase subunit alpha 174 46.97 +1 183783..184178 + 131 114561362 rplQ Sfri_0174 - 50S ribosomal protein L17 175 43.42 0 185244..185729 - 161 114561363 - Sfri_0175 - cytochrome c-type biogenesis protein CcmE 176 38.97 -1 185713..185925 - 70 114561364 - Sfri_0176 - Heme exporter protein D (CcmD) 177 42.70 0 185925..186671 - 248 114561365 - Sfri_0177 - heme exporter protein CcmC 178 41.34 0 186671..187357 - 228 114561366 - Sfri_0178 - heme exporter protein CcmB 179 38.40 -1 187367..188017 - 216 114561367 - Sfri_0179 - cytochrome c biogenesis protein CcmA 180 41.84 0 188342..188635 + 97 114561368 - Sfri_0180 - cytochrome c, class I 181 42.82 0 188731..189984 - 417 114561369 - Sfri_0181 - TPR repeat-containing protein 182 42.77 0 190402..192372 + 656 114561370 - Sfri_0182 - cytochrome c-type biogenesis protein CcmF 183 39.10 0 192389..192943 + 184 114561371 - Sfri_0183 - periplasmic protein thiol--disulphide oxidoreductase DsbE 184 39.75 0 192943..193425 + 160 114561372 - Sfri_0184 - cytochrome C biogenesis protein 185 42.22 0 193486..194025 + 179 114561373 - Sfri_0185 - redoxin domain-containing protein 186 41.49 0 201080..202354 + 424 114561374 - Sfri_0186 - competence/damage-inducible protein CinA 187 41.31 0 202404..205463 - 1019 114561375 - Sfri_0187 - hypothetical protein 188 40.93 0 205651..206190 - 179 114561376 - Sfri_0188 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0