version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1271 40.69 0 1515927..1516388 + 153 114562459 - Sfri_1281 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 1272 42.02 0 1516385..1517155 + 256 114562460 - Sfri_1282 - UDP-N-acetylglucosamine acyltransferase 1273 43.52 0 1517165..1518313 + 382 114562461 lpxB Sfri_1283 - lipid-A-disaccharide synthase 1274 45.07 0 1518334..1518972 + 212 114562462 - Sfri_1284 - ribonuclease H 1275 45.47 +1 1519083..1522559 + 1158 114562463 dnaE Sfri_1285 - DNA polymerase III subunit alpha 1276 46.63 +1 1522569..1524035 + 488 114562464 - Sfri_1286 - tRNA(Ile)-lysidine synthetase 1277 44.72 0 1524300..1525889 + 529 114562465 - Sfri_1287 - peptidase M28 1278 30.64 -2 1526736..1527998 + 420 114562466 - Sfri_1288 - hypothetical protein 1279 40.42 0 1528484..1529527 - 347 114562467 - Sfri_1289 - transposase IS116/IS110/IS902 family protein 1280 45.02 0 1530169..1531263 - 364 114562468 - Sfri_1290 - GCN5-related N-acetyltransferase 1281 41.39 0 1531339..1532790 + 483 114562469 - Sfri_1291 - RimK domain-containing protein ATP-grasp 1282 40.82 0 1532879..1533760 - 293 114562470 - Sfri_1292 - diguanylate cyclase 1283 46.24 +1 1533923..1535875 + 650 114562471 - Sfri_1293 - potassium efflux system protein 1284 41.71 0 1536058..1536594 + 178 114562472 - Sfri_1294 - ECF subfamily RNA polymerase sigma-24 factor 1285 43.28 0 1536591..1537304 + 237 114562473 - Sfri_1295 - hypothetical protein 1286 43.98 0 1537676..1539262 + 528 114562474 - Sfri_1296 - hypothetical protein 1287 44.38 0 1539273..1539815 + 180 114562475 - Sfri_1297 - hypothetical protein 1288 39.31 0 1539988..1541124 + 378 114562476 - Sfri_1298 - TPR repeat-containing protein 1289 41.96 0 1541135..1542259 + 374 114562477 - Sfri_1299 - hypothetical protein 1290 41.86 0 1542734..1545946 + 1070 114562478 - Sfri_1300 - SNF2-related protein 1291 42.53 0 1546158..1546505 + 115 114562479 - Sfri_1301 - putative orphan protein 1292 42.81 0 1547241..1548833 + 530 114562480 mdoG Sfri_1302 - glucan biosynthesis protein G 1293 44.93 0 1548830..1550950 + 706 114562481 - Sfri_1303 - glucosyltransferase MdoH 1294 47.66 +1 1551100..1552104 - 334 114562482 - Sfri_1304 - NADH:flavin oxidoreductase/NADH oxidase 1295 43.74 0 1552114..1552728 - 204 114562483 - Sfri_1305 - lysine exporter protein LysE/YggA 1296 43.10 0 1552976..1553446 + 156 114562484 - Sfri_1306 - DTW domain-containing protein 1297 46.40 +1 1553519..1556182 - 887 114562485 - Sfri_1307 - Beta-glucosidase 1298 43.96 0 1556198..1556959 - 253 114562486 - Sfri_1308 - hypothetical protein 1299 43.95 0 1556969..1558456 - 495 114562487 - Sfri_1309 - tryptophan halogenase 1300 45.78 +1 1558499..1559518 - 339 114562488 - Sfri_1310 - transcription factor jumonji domain-containing protein 1301 43.98 0 1559524..1560246 - 240 114562489 - Sfri_1311 - SapC family protein 1302 45.06 0 1560357..1561934 - 525 114562490 - Sfri_1312 - tryptophan halogenase 1303 43.31 0 1562246..1565182 - 978 114562491 - Sfri_1313 - TonB-dependent receptor, plug 1304 42.30 0 1565677..1566735 - 352 114562492 - Sfri_1314 - transcriptional regulator, LacI family protein 1305 43.57 0 1566740..1568068 - 442 114562493 - Sfri_1315 - sugar (glycoside-Pentoside-hexuronide) transporter 1306 40.99 0 1568160..1569491 - 443 114562494 - Sfri_1316 - Beta-glucosidase 1307 43.43 0 1569874..1571181 + 435 114562495 - Sfri_1317 - glucose/galactose transporter 1308 44.38 0 1571191..1573833 + 880 114562496 - Sfri_1318 - Beta-glucosidase 1309 43.55 0 1573973..1575049 + 358 114562497 - Sfri_1319 - glucan endo-1,3-beta-D-glucosidase 1310 44.69 0 1575452..1576252 + 266 114562498 - Sfri_1320 - 3'(2'),5'-bisphosphate nucleotidase 1311 46.58 +1 1576326..1577231 + 301 114562499 - Sfri_1321 - fructokinase 1312 43.74 0 1577397..1578155 + 252 114562500 - Sfri_1322 - hypothetical protein 1313 43.82 0 1578245..1578940 + 231 114562501 - Sfri_1323 - hypothetical protein 1314 42.51 0 1578972..1579385 + 137 114562502 - Sfri_1324 - glutathione-dependent formaldehyde-activating, GFA 1315 40.56 0 1579382..1579741 - 119 114562503 - Sfri_1325 - hypothetical protein 1316 45.47 +1 1579866..1580351 - 161 114562504 - Sfri_1326 - ferredoxin-type protein NapF 1317 42.98 0 1580674..1581699 - 341 114562505 - Sfri_1327 - UDP-glucose 4-epimerase 1318 41.35 0 1582052..1582849 + 265 114562506 phhA Sfri_1328 - phenylalanine 4-monooxygenase 1319 43.95 0 1582923..1583261 + 112 114562507 phhB Sfri_1329 - pterin-4-alpha-carbinolamine dehydratase 1320 43.66 0 1583426..1584964 + 512 114562508 - Sfri_1330 - transcriptional regulator, TyrR 1321 43.47 0 1585202..1586188 + 328 114562509 - Sfri_1331 - fumarylacetoacetate (FAA) hydrolase 1322 42.70 0 1586287..1586937 + 216 114562510 - Sfri_1332 - maleylacetoacetate isomerase 1323 42.62 0 1587002..1587604 + 200 114562511 - Sfri_1333 - hypothetical protein 1324 40.12 0 1587851..1588498 + 215 114562512 - Sfri_1334 - outer membrane protein W 1325 42.88 0 1588578..1589321 - 247 114562513 - Sfri_1335 - short chain dehydrogenase family protein 1326 39.89 0 1589683..1590627 + 314 114562514 - Sfri_1336 - homoserine O-succinyltransferase 1327 39.31 0 1590741..1592648 + 635 114562515 - Sfri_1337 - diguanylate cyclase 1328 48.19 +1 1592959..1594149 + 396 114562516 - Sfri_1338 - acetyl-CoA acetyltransferases 1329 45.72 +1 1594314..1595807 + 497 114562517 - Sfri_1339 - methylmalonate-semialdehyde dehydrogenase 1330 46.89 +1 1595973..1597130 + 385 114562518 - Sfri_1340 - butyryl-CoA dehydrogenase 1331 47.89 +1 1597181..1597963 + 260 114562519 - Sfri_1341 - enoyl-CoA hydratase 1332 44.59 0 1597963..1599081 + 372 114562520 - Sfri_1342 - enoyl-CoA hydratase/isomerase 1333 45.56 +1 1599096..1599995 + 299 114562521 - Sfri_1343 - 3-hydroxyisobutyrate dehydrogenase 1334 43.74 0 1600008..1600766 + 252 114562522 fabG Sfri_1344 - 3-ketoacyl-(acyl-carrier-protein) reductase 1335 38.16 -1 1600968..1601174 + 68 114562523 - Sfri_1345 - hypothetical protein 1336 43.39 0 1601182..1602126 + 314 114562524 - Sfri_1346 - hypothetical protein 1337 43.00 0 1602228..1603148 + 306 114562525 - Sfri_1347 - hypothetical protein 1338 38.49 -1 1603644..1604594 + 316 114562526 - Sfri_1348 - hypothetical protein 1339 40.79 0 1605047..1606615 + 522 114562527 - Sfri_1349 - ABC transporter related 1340 36.87 -1 1606744..1607139 + 131 114562528 - Sfri_1350 - hypothetical protein 1341 41.64 0 1607166..1607972 + 268 114562529 - Sfri_1351 - alpha/beta hydrolase fold 1342 42.15 0 1608270..1610276 + 668 114562530 - Sfri_1352 - methyl-accepting chemotaxis sensory transducer 1343 39.78 0 1610738..1611280 - 180 114562531 - Sfri_1353 - hypothetical protein 1344 39.60 0 1611310..1611915 - 201 114562532 - Sfri_1354 - lysine exporter protein LysE/YggA 1345 39.44 0 1612094..1612912 - 272 114562533 - Sfri_1355 - hypothetical protein 1346 37.28 -1 1613007..1613513 - 168 114562534 - Sfri_1356 - amino acid-binding ACT domain-containing protein 1347 42.77 0 1613710..1615965 + 751 114562535 - Sfri_1357 - binding-protein-dependent transport systems inner membrane component 1348 44.40 0 1616024..1617685 + 553 114562536 - Sfri_1358 - phosphate ABC transporter, inner membrane subunit PstA 1349 42.74 0 1617712..1618530 + 272 114562537 - Sfri_1359 - phosphate ABC transporter, ATPase subunit 1350 42.39 0 1618588..1619283 + 231 114562538 - Sfri_1360 - transcriptional regulator PhoU 1351 42.27 0 1619423..1620004 + 193 114562539 - Sfri_1361 - hypothetical protein 1352 40.86 0 1620297..1620668 + 123 114562540 - Sfri_1362 - hypothetical protein 1353 40.79 0 1621144..1621371 - 75 114562541 - Sfri_1363 - hypothetical protein 1354 40.93 0 1621451..1622767 + 438 114562542 - Sfri_1364 - hypothetical protein 1355 47.71 +1 1623023..1624072 + 349 114562543 - Sfri_1365 - 3-oxoacyl-(acyl carrier protein) synthase III 1356 43.72 0 1624131..1625006 + 291 114562544 - Sfri_1366 - alpha/beta hydrolase fold 1357 44.31 0 1625129..1626823 + 564 114562545 - Sfri_1367 - peptide synthase 1358 46.29 +1 1626857..1627906 + 349 114562546 - Sfri_1368 - 3-beta hydroxysteroid dehydrogenase/isomerase 1359 46.24 +1 1628128..1629312 + 394 114562547 - Sfri_1369 - methionine gamma-lyase 1360 48.60 +2 1629729..1630121 - 130 114562548 - Sfri_1370 - hypothetical protein 1361 38.35 -1 1630121..1632211 - 696 114562549 - Sfri_1371 - diguanylate cyclase/phosphodiesterase 1362 40.96 0 1632239..1632841 - 200 114562550 - Sfri_1372 - hypothetical protein 1363 40.19 0 1634326..1635492 + 388 114562551 - Sfri_1373 - UDP-glucose 6-dehydrogenase 1364 38.07 -1 1635522..1636535 + 337 114562552 - Sfri_1374 - NAD-dependent epimerase/dehydratase 1365 30.72 -2 1636544..1637347 + 267 114562553 - Sfri_1375 - glycosyl transferase, WecB/TagA/CpsF family protein 1366 32.07 -2 1637500..1638606 + 368 114562554 - Sfri_1376 - glycosyl transferase, group 1 1367 38.39 -1 1638606..1639712 + 368 114562555 - Sfri_1377 - glycosyl transferase, group 1 1368 31.25 -2 1639702..1640952 + 416 114562556 - Sfri_1378 - O-antigen polymerase 1369 30.76 -2 1640999..1641892 + 297 114562557 - Sfri_1379 - glycosyl transferase family protein 1370 30.79 -2 1641894..1643309 + 471 114562558 - Sfri_1380 - polysaccharide biosynthesis protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0