version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1251 39.94 0 1492826..1493188 + 120 114562439 - Sfri_1261 - hypothetical protein 1252 40.70 0 1493272..1494153 + 293 114562440 - Sfri_1262 - pseudouridylate synthase 1253 41.72 0 1494481..1494945 + 154 114562441 - Sfri_1263 - flavodoxin 1254 43.61 0 1494897..1496375 + 492 114562442 - Sfri_1264 - PTS system, glucose-like IIB subunint 1255 37.34 -1 1496555..1497427 + 290 114562443 purU Sfri_1265 - formyltetrahydrofolate deformylase 1256 39.19 0 1497594..1499489 + 631 114562444 - Sfri_1266 - metal dependent phosphohydrolase 1257 44.85 0 1499626..1500450 - 274 114562445 dapD Sfri_1267 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 1258 41.84 0 1500501..1503074 - 857 114562446 - Sfri_1268 - PII uridylyl-transferase 1259 39.72 0 1503099..1503896 - 265 114562447 - Sfri_1269 - methionine aminopeptidase 1260 44.03 0 1504247..1504975 + 242 114562448 rpsB Sfri_1270 - 30S ribosomal protein S2 1261 44.72 0 1505093..1505944 + 283 114562449 tsf Sfri_1271 - elongation factor Ts 1262 43.36 0 1506013..1506750 + 245 114562450 pyrH Sfri_1272 - uridylate kinase 1263 41.40 0 1506870..1507427 + 185 114562451 - Sfri_1273 - ribosome recycling factor 1264 43.03 0 1507509..1508333 + 274 114562452 - Sfri_1274 - undecaprenyl diphosphate synthase 1265 42.66 0 1508353..1509210 + 285 114562453 - Sfri_1275 - phosphatidate cytidylyltransferase 1266 44.50 0 1509216..1510406 + 396 114562454 - Sfri_1276 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1267 43.69 0 1510419..1511789 + 456 114562455 - Sfri_1277 - putative membrane-associated zinc metalloprotease 1268 41.99 0 1511821..1514304 + 827 114562456 - Sfri_1278 - surface antigen (D15) 1269 40.96 0 1514370..1514867 + 165 114562457 - Sfri_1279 - outer membrane chaperone Skp (OmpH) 1270 43.79 0 1514873..1515895 + 340 114562458 - Sfri_1280 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1271 40.69 0 1515927..1516388 + 153 114562459 - Sfri_1281 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 1272 42.02 0 1516385..1517155 + 256 114562460 - Sfri_1282 - UDP-N-acetylglucosamine acyltransferase 1273 43.52 0 1517165..1518313 + 382 114562461 lpxB Sfri_1283 - lipid-A-disaccharide synthase 1274 45.07 0 1518334..1518972 + 212 114562462 - Sfri_1284 - ribonuclease H 1275 45.47 +1 1519083..1522559 + 1158 114562463 dnaE Sfri_1285 - DNA polymerase III subunit alpha 1276 46.63 +1 1522569..1524035 + 488 114562464 - Sfri_1286 - tRNA(Ile)-lysidine synthetase 1277 44.72 0 1524300..1525889 + 529 114562465 - Sfri_1287 - peptidase M28 1278 30.64 -2 1526736..1527998 + 420 114562466 - Sfri_1288 - hypothetical protein 1279 40.42 0 1528484..1529527 - 347 114562467 - Sfri_1289 - transposase IS116/IS110/IS902 family protein 1280 45.02 0 1530169..1531263 - 364 114562468 - Sfri_1290 - GCN5-related N-acetyltransferase 1281 41.39 0 1531339..1532790 + 483 114562469 - Sfri_1291 - RimK domain-containing protein ATP-grasp 1282 40.82 0 1532879..1533760 - 293 114562470 - Sfri_1292 - diguanylate cyclase 1283 46.24 +1 1533923..1535875 + 650 114562471 - Sfri_1293 - potassium efflux system protein 1284 41.71 0 1536058..1536594 + 178 114562472 - Sfri_1294 - ECF subfamily RNA polymerase sigma-24 factor 1285 43.28 0 1536591..1537304 + 237 114562473 - Sfri_1295 - hypothetical protein 1286 43.98 0 1537676..1539262 + 528 114562474 - Sfri_1296 - hypothetical protein 1287 44.38 0 1539273..1539815 + 180 114562475 - Sfri_1297 - hypothetical protein 1288 39.31 0 1539988..1541124 + 378 114562476 - Sfri_1298 - TPR repeat-containing protein 1289 41.96 0 1541135..1542259 + 374 114562477 - Sfri_1299 - hypothetical protein 1290 41.86 0 1542734..1545946 + 1070 114562478 - Sfri_1300 - SNF2-related protein 1291 42.53 0 1546158..1546505 + 115 114562479 - Sfri_1301 - putative orphan protein 1292 42.81 0 1547241..1548833 + 530 114562480 mdoG Sfri_1302 - glucan biosynthesis protein G 1293 44.93 0 1548830..1550950 + 706 114562481 - Sfri_1303 - glucosyltransferase MdoH 1294 47.66 +1 1551100..1552104 - 334 114562482 - Sfri_1304 - NADH:flavin oxidoreductase/NADH oxidase 1295 43.74 0 1552114..1552728 - 204 114562483 - Sfri_1305 - lysine exporter protein LysE/YggA 1296 43.10 0 1552976..1553446 + 156 114562484 - Sfri_1306 - DTW domain-containing protein 1297 46.40 +1 1553519..1556182 - 887 114562485 - Sfri_1307 - Beta-glucosidase 1298 43.96 0 1556198..1556959 - 253 114562486 - Sfri_1308 - hypothetical protein 1299 43.95 0 1556969..1558456 - 495 114562487 - Sfri_1309 - tryptophan halogenase 1300 45.78 +1 1558499..1559518 - 339 114562488 - Sfri_1310 - transcription factor jumonji domain-containing protein 1301 43.98 0 1559524..1560246 - 240 114562489 - Sfri_1311 - SapC family protein 1302 45.06 0 1560357..1561934 - 525 114562490 - Sfri_1312 - tryptophan halogenase 1303 43.31 0 1562246..1565182 - 978 114562491 - Sfri_1313 - TonB-dependent receptor, plug 1304 42.30 0 1565677..1566735 - 352 114562492 - Sfri_1314 - transcriptional regulator, LacI family protein 1305 43.57 0 1566740..1568068 - 442 114562493 - Sfri_1315 - sugar (glycoside-Pentoside-hexuronide) transporter 1306 40.99 0 1568160..1569491 - 443 114562494 - Sfri_1316 - Beta-glucosidase 1307 43.43 0 1569874..1571181 + 435 114562495 - Sfri_1317 - glucose/galactose transporter 1308 44.38 0 1571191..1573833 + 880 114562496 - Sfri_1318 - Beta-glucosidase 1309 43.55 0 1573973..1575049 + 358 114562497 - Sfri_1319 - glucan endo-1,3-beta-D-glucosidase 1310 44.69 0 1575452..1576252 + 266 114562498 - Sfri_1320 - 3'(2'),5'-bisphosphate nucleotidase 1311 46.58 +1 1576326..1577231 + 301 114562499 - Sfri_1321 - fructokinase 1312 43.74 0 1577397..1578155 + 252 114562500 - Sfri_1322 - hypothetical protein 1313 43.82 0 1578245..1578940 + 231 114562501 - Sfri_1323 - hypothetical protein 1314 42.51 0 1578972..1579385 + 137 114562502 - Sfri_1324 - glutathione-dependent formaldehyde-activating, GFA 1315 40.56 0 1579382..1579741 - 119 114562503 - Sfri_1325 - hypothetical protein 1316 45.47 +1 1579866..1580351 - 161 114562504 - Sfri_1326 - ferredoxin-type protein NapF 1317 42.98 0 1580674..1581699 - 341 114562505 - Sfri_1327 - UDP-glucose 4-epimerase 1318 41.35 0 1582052..1582849 + 265 114562506 phhA Sfri_1328 - phenylalanine 4-monooxygenase 1319 43.95 0 1582923..1583261 + 112 114562507 phhB Sfri_1329 - pterin-4-alpha-carbinolamine dehydratase 1320 43.66 0 1583426..1584964 + 512 114562508 - Sfri_1330 - transcriptional regulator, TyrR 1321 43.47 0 1585202..1586188 + 328 114562509 - Sfri_1331 - fumarylacetoacetate (FAA) hydrolase 1322 42.70 0 1586287..1586937 + 216 114562510 - Sfri_1332 - maleylacetoacetate isomerase 1323 42.62 0 1587002..1587604 + 200 114562511 - Sfri_1333 - hypothetical protein 1324 40.12 0 1587851..1588498 + 215 114562512 - Sfri_1334 - outer membrane protein W 1325 42.88 0 1588578..1589321 - 247 114562513 - Sfri_1335 - short chain dehydrogenase family protein 1326 39.89 0 1589683..1590627 + 314 114562514 - Sfri_1336 - homoserine O-succinyltransferase 1327 39.31 0 1590741..1592648 + 635 114562515 - Sfri_1337 - diguanylate cyclase 1328 48.19 +1 1592959..1594149 + 396 114562516 - Sfri_1338 - acetyl-CoA acetyltransferases 1329 45.72 +1 1594314..1595807 + 497 114562517 - Sfri_1339 - methylmalonate-semialdehyde dehydrogenase 1330 46.89 +1 1595973..1597130 + 385 114562518 - Sfri_1340 - butyryl-CoA dehydrogenase 1331 47.89 +1 1597181..1597963 + 260 114562519 - Sfri_1341 - enoyl-CoA hydratase 1332 44.59 0 1597963..1599081 + 372 114562520 - Sfri_1342 - enoyl-CoA hydratase/isomerase 1333 45.56 +1 1599096..1599995 + 299 114562521 - Sfri_1343 - 3-hydroxyisobutyrate dehydrogenase 1334 43.74 0 1600008..1600766 + 252 114562522 fabG Sfri_1344 - 3-ketoacyl-(acyl-carrier-protein) reductase 1335 38.16 -1 1600968..1601174 + 68 114562523 - Sfri_1345 - hypothetical protein 1336 43.39 0 1601182..1602126 + 314 114562524 - Sfri_1346 - hypothetical protein 1337 43.00 0 1602228..1603148 + 306 114562525 - Sfri_1347 - hypothetical protein 1338 38.49 -1 1603644..1604594 + 316 114562526 - Sfri_1348 - hypothetical protein 1339 40.79 0 1605047..1606615 + 522 114562527 - Sfri_1349 - ABC transporter related 1340 36.87 -1 1606744..1607139 + 131 114562528 - Sfri_1350 - hypothetical protein 1341 41.64 0 1607166..1607972 + 268 114562529 - Sfri_1351 - alpha/beta hydrolase fold 1342 42.15 0 1608270..1610276 + 668 114562530 - Sfri_1352 - methyl-accepting chemotaxis sensory transducer 1343 39.78 0 1610738..1611280 - 180 114562531 - Sfri_1353 - hypothetical protein 1344 39.60 0 1611310..1611915 - 201 114562532 - Sfri_1354 - lysine exporter protein LysE/YggA 1345 39.44 0 1612094..1612912 - 272 114562533 - Sfri_1355 - hypothetical protein 1346 37.28 -1 1613007..1613513 - 168 114562534 - Sfri_1356 - amino acid-binding ACT domain-containing protein 1347 42.77 0 1613710..1615965 + 751 114562535 - Sfri_1357 - binding-protein-dependent transport systems inner membrane component 1348 44.40 0 1616024..1617685 + 553 114562536 - Sfri_1358 - phosphate ABC transporter, inner membrane subunit PstA 1349 42.74 0 1617712..1618530 + 272 114562537 - Sfri_1359 - phosphate ABC transporter, ATPase subunit 1350 42.39 0 1618588..1619283 + 231 114562538 - Sfri_1360 - transcriptional regulator PhoU 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0