version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1214 43.63 0 1449419..1449952 - 177 114562402 - Sfri_1224 - sigma-70 factor 1215 45.15 0 1449949..1450515 - 188 114562403 - Sfri_1225 - hypothetical protein 1216 43.73 0 1450521..1451174 - 217 114562404 - Sfri_1226 - MotA/TolQ/ExbB proton channel 1217 42.94 0 1451307..1451660 - 117 114562405 - Sfri_1227 - hypothetical protein 1218 44.95 0 1451662..1452453 - 263 114562406 - Sfri_1228 - TPR repeat-containing protein 1219 43.53 0 1452440..1455490 - 1016 114562407 - Sfri_1229 - TPR repeat-containing protein 1220 43.15 0 1455490..1457568 - 692 114562408 - Sfri_1230 - hypothetical protein 1221 41.53 0 1457728..1458288 - 186 114562409 - Sfri_1231 - helix-turn-helix, AraC type 1222 43.81 0 1458343..1459506 - 387 114562410 - Sfri_1232 - hypothetical protein 1223 49.81 +2 1459484..1459744 - 86 114562411 - Sfri_1233 - putative lipoprotein 1224 43.25 0 1459749..1460252 - 167 114562412 - Sfri_1234 - redoxin domain-containing protein 1225 44.08 0 1460330..1460962 - 210 114562413 - Sfri_1235 - hypothetical protein 1226 43.05 0 1460962..1461702 - 246 114562414 - Sfri_1236 - hypothetical protein 1227 45.37 +1 1461760..1464417 - 885 114562415 - Sfri_1237 - hypothetical protein 1228 43.97 0 1464721..1465989 + 422 114562416 - Sfri_1238 - hypothetical protein 1229 44.71 0 1466004..1468430 + 808 114562417 - Sfri_1239 - hypothetical protein 1230 47.15 +1 1468575..1470152 + 525 114562418 - Sfri_1240 - twin-arginine translocation pathway signal 1231 30.73 -2 1470805..1471881 + 358 114562419 - Sfri_1241 - hypothetical protein 1232 39.52 0 1472307..1473050 + 247 114562420 - Sfri_1242 - hypothetical protein 1233 34.17 -2 1473171..1473650 + 159 114562421 - Sfri_1243 - hypothetical protein 1234 42.98 0 1473891..1474937 - 348 114562422 - Sfri_1244 - ApbE family lipoprotein 1235 44.08 0 1475090..1476085 + 331 114562423 - Sfri_1245 - 4'-phosphopantetheinyl transferase 1236 41.87 0 1476242..1478233 - 663 114562424 - Sfri_1246 - beta-lactamase domain-containing protein 1237 41.90 0 1478449..1479405 + 318 114562425 - Sfri_1247 - transcriptional regulator, LysR family protein 1238 41.26 0 1479554..1480411 - 285 114562426 queF Sfri_1248 - 7-cyano-7-deazaguanine reductase 1239 38.56 -1 1480466..1481116 + 216 114562427 - Sfri_1249 - SecY interacting protein Syd 1240 41.53 0 1481231..1483951 - 906 114562428 - Sfri_1250 - hypothetical protein 1241 45.35 +1 1483960..1484733 - 257 114562429 - Sfri_1251 - hypothetical protein 1242 43.44 0 1484734..1485099 - 121 114562430 - Sfri_1252 - hypothetical protein 1243 41.15 0 1485259..1485642 + 127 114562431 - Sfri_1253 - hypothetical protein 1244 36.71 -1 1485677..1485913 - 78 114562432 - Sfri_1254 - hypothetical protein 1245 42.86 0 1486087..1486716 + 209 114562433 - Sfri_1255 - GCN5-related N-acetyltransferase 1246 37.86 -1 1486786..1487094 + 102 114562434 - Sfri_1256 - hypothetical protein 1247 48.42 +2 1488253..1489299 + 348 114562435 - Sfri_1257 - oxidoreductase domain-containing protein 1248 37.71 -1 1490579..1491286 + 235 114562436 - Sfri_1258 - hypothetical protein 1249 41.09 0 1491381..1491767 - 128 114562437 - Sfri_1259 - hypothetical protein 1250 40.73 0 1491764..1492777 - 337 114562438 - Sfri_1260 - hypothetical protein 1251 39.94 0 1492826..1493188 + 120 114562439 - Sfri_1261 - hypothetical protein 1252 40.70 0 1493272..1494153 + 293 114562440 - Sfri_1262 - pseudouridylate synthase 1253 41.72 0 1494481..1494945 + 154 114562441 - Sfri_1263 - flavodoxin 1254 43.61 0 1494897..1496375 + 492 114562442 - Sfri_1264 - PTS system, glucose-like IIB subunint 1255 37.34 -1 1496555..1497427 + 290 114562443 purU Sfri_1265 - formyltetrahydrofolate deformylase 1256 39.19 0 1497594..1499489 + 631 114562444 - Sfri_1266 - metal dependent phosphohydrolase 1257 44.85 0 1499626..1500450 - 274 114562445 dapD Sfri_1267 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 1258 41.84 0 1500501..1503074 - 857 114562446 - Sfri_1268 - PII uridylyl-transferase 1259 39.72 0 1503099..1503896 - 265 114562447 - Sfri_1269 - methionine aminopeptidase 1260 44.03 0 1504247..1504975 + 242 114562448 rpsB Sfri_1270 - 30S ribosomal protein S2 1261 44.72 0 1505093..1505944 + 283 114562449 tsf Sfri_1271 - elongation factor Ts 1262 43.36 0 1506013..1506750 + 245 114562450 pyrH Sfri_1272 - uridylate kinase 1263 41.40 0 1506870..1507427 + 185 114562451 - Sfri_1273 - ribosome recycling factor 1264 43.03 0 1507509..1508333 + 274 114562452 - Sfri_1274 - undecaprenyl diphosphate synthase 1265 42.66 0 1508353..1509210 + 285 114562453 - Sfri_1275 - phosphatidate cytidylyltransferase 1266 44.50 0 1509216..1510406 + 396 114562454 - Sfri_1276 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1267 43.69 0 1510419..1511789 + 456 114562455 - Sfri_1277 - putative membrane-associated zinc metalloprotease 1268 41.99 0 1511821..1514304 + 827 114562456 - Sfri_1278 - surface antigen (D15) 1269 40.96 0 1514370..1514867 + 165 114562457 - Sfri_1279 - outer membrane chaperone Skp (OmpH) 1270 43.79 0 1514873..1515895 + 340 114562458 - Sfri_1280 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1271 40.69 0 1515927..1516388 + 153 114562459 - Sfri_1281 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 1272 42.02 0 1516385..1517155 + 256 114562460 - Sfri_1282 - UDP-N-acetylglucosamine acyltransferase 1273 43.52 0 1517165..1518313 + 382 114562461 lpxB Sfri_1283 - lipid-A-disaccharide synthase 1274 45.07 0 1518334..1518972 + 212 114562462 - Sfri_1284 - ribonuclease H 1275 45.47 +1 1519083..1522559 + 1158 114562463 dnaE Sfri_1285 - DNA polymerase III subunit alpha 1276 46.63 +1 1522569..1524035 + 488 114562464 - Sfri_1286 - tRNA(Ile)-lysidine synthetase 1277 44.72 0 1524300..1525889 + 529 114562465 - Sfri_1287 - peptidase M28 1278 30.64 -2 1526736..1527998 + 420 114562466 - Sfri_1288 - hypothetical protein 1279 40.42 0 1528484..1529527 - 347 114562467 - Sfri_1289 - transposase IS116/IS110/IS902 family protein 1280 45.02 0 1530169..1531263 - 364 114562468 - Sfri_1290 - GCN5-related N-acetyltransferase 1281 41.39 0 1531339..1532790 + 483 114562469 - Sfri_1291 - RimK domain-containing protein ATP-grasp 1282 40.82 0 1532879..1533760 - 293 114562470 - Sfri_1292 - diguanylate cyclase 1283 46.24 +1 1533923..1535875 + 650 114562471 - Sfri_1293 - potassium efflux system protein 1284 41.71 0 1536058..1536594 + 178 114562472 - Sfri_1294 - ECF subfamily RNA polymerase sigma-24 factor 1285 43.28 0 1536591..1537304 + 237 114562473 - Sfri_1295 - hypothetical protein 1286 43.98 0 1537676..1539262 + 528 114562474 - Sfri_1296 - hypothetical protein 1287 44.38 0 1539273..1539815 + 180 114562475 - Sfri_1297 - hypothetical protein 1288 39.31 0 1539988..1541124 + 378 114562476 - Sfri_1298 - TPR repeat-containing protein 1289 41.96 0 1541135..1542259 + 374 114562477 - Sfri_1299 - hypothetical protein 1290 41.86 0 1542734..1545946 + 1070 114562478 - Sfri_1300 - SNF2-related protein 1291 42.53 0 1546158..1546505 + 115 114562479 - Sfri_1301 - putative orphan protein 1292 42.81 0 1547241..1548833 + 530 114562480 mdoG Sfri_1302 - glucan biosynthesis protein G 1293 44.93 0 1548830..1550950 + 706 114562481 - Sfri_1303 - glucosyltransferase MdoH 1294 47.66 +1 1551100..1552104 - 334 114562482 - Sfri_1304 - NADH:flavin oxidoreductase/NADH oxidase 1295 43.74 0 1552114..1552728 - 204 114562483 - Sfri_1305 - lysine exporter protein LysE/YggA 1296 43.10 0 1552976..1553446 + 156 114562484 - Sfri_1306 - DTW domain-containing protein 1297 46.40 +1 1553519..1556182 - 887 114562485 - Sfri_1307 - Beta-glucosidase 1298 43.96 0 1556198..1556959 - 253 114562486 - Sfri_1308 - hypothetical protein 1299 43.95 0 1556969..1558456 - 495 114562487 - Sfri_1309 - tryptophan halogenase 1300 45.78 +1 1558499..1559518 - 339 114562488 - Sfri_1310 - transcription factor jumonji domain-containing protein 1301 43.98 0 1559524..1560246 - 240 114562489 - Sfri_1311 - SapC family protein 1302 45.06 0 1560357..1561934 - 525 114562490 - Sfri_1312 - tryptophan halogenase 1303 43.31 0 1562246..1565182 - 978 114562491 - Sfri_1313 - TonB-dependent receptor, plug 1304 42.30 0 1565677..1566735 - 352 114562492 - Sfri_1314 - transcriptional regulator, LacI family protein 1305 43.57 0 1566740..1568068 - 442 114562493 - Sfri_1315 - sugar (glycoside-Pentoside-hexuronide) transporter 1306 40.99 0 1568160..1569491 - 443 114562494 - Sfri_1316 - Beta-glucosidase 1307 43.43 0 1569874..1571181 + 435 114562495 - Sfri_1317 - glucose/galactose transporter 1308 44.38 0 1571191..1573833 + 880 114562496 - Sfri_1318 - Beta-glucosidase 1309 43.55 0 1573973..1575049 + 358 114562497 - Sfri_1319 - glucan endo-1,3-beta-D-glucosidase 1310 44.69 0 1575452..1576252 + 266 114562498 - Sfri_1320 - 3'(2'),5'-bisphosphate nucleotidase 1311 46.58 +1 1576326..1577231 + 301 114562499 - Sfri_1321 - fructokinase 1312 43.74 0 1577397..1578155 + 252 114562500 - Sfri_1322 - hypothetical protein 1313 43.82 0 1578245..1578940 + 231 114562501 - Sfri_1323 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0