version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1157 44.74 0 1374005..1374679 + 224 114562345 flgH Sfri_1167 - flagellar basal body L-ring protein 1158 45.53 +1 1374690..1375796 + 368 114562346 flgI Sfri_1168 - flagellar basal body P-ring protein 1159 42.59 0 1375808..1376941 + 377 114562347 flgJ Sfri_1169 - peptidoglycan hydrolase 1160 43.44 0 1376941..1378869 + 642 114562348 - Sfri_1170 - flagellar hook-associated protein FlgK 1161 44.28 0 1378880..1380085 + 401 114562349 flgL Sfri_1171 - flagellar hook-associated protein FlgL 1162 45.96 +1 1380178..1381626 + 482 114562350 - Sfri_1172 - flagellin domain-containing protein 1163 45.78 +1 1381888..1383333 + 481 114562351 - Sfri_1173 - flagellin domain-containing protein 1164 41.78 0 1383550..1383999 + 149 114562352 - Sfri_1174 - flagellar protein FlaG protein 1165 41.76 0 1384065..1385429 + 454 114562353 - Sfri_1175 - flagellar hook-associated 2 domain-containing protein 1166 35.65 -2 1385517..1385861 + 114 114562354 - Sfri_1176 - hypothetical protein 1167 41.73 0 1385868..1386272 + 134 114562355 fliS Sfri_1177 - flagellar protein FliS 1168 42.49 0 1386925..1388355 + 476 114562356 - Sfri_1178 - sigma54 specific transcriptional regulator, Fis family protein 1169 45.10 0 1388861..1389931 + 356 114562357 - Sfri_1179 - PAS/PAC sensor signal transduction histidine kinase 1170 43.19 0 1389924..1391273 + 449 114562358 - Sfri_1180 - two component, sigma54 specific, transcriptional regulator, Fis family protein 1171 45.61 +1 1391514..1391855 + 113 114562359 - Sfri_1181 - flagellar hook-basal body complex subunit FliE 1172 43.77 0 1391931..1393607 + 558 114562360 fliF Sfri_1182 - flagellar MS-ring protein 1173 42.42 0 1393600..1394655 + 351 114562361 fliG Sfri_1183 - flagellar motor switch protein G 1174 43.15 0 1394810..1396021 + 403 114562362 fliH Sfri_1184 - flagellar assembly protein H 1175 46.09 +1 1396002..1397342 + 446 114562363 fliI Sfri_1185 - flagellum-specific ATP synthase 1176 40.04 0 1397348..1397794 + 148 114562364 - Sfri_1186 - flagellar export protein FliJ 1177 41.72 0 1398099..1399637 + 512 114562365 - Sfri_1187 - flagellar hook-length control protein 1178 39.46 0 1399731..1400252 + 173 114562366 fliL Sfri_1188 - flagellar basal body-associated protein FliL 1179 42.57 0 1400282..1401310 + 342 114562367 fliM Sfri_1189 - flagellar motor switch protein FliM 1180 42.71 0 1401322..1401705 + 127 114562368 fliN Sfri_1190 - flagellar motor switch protein 1181 42.58 0 1401791..1402201 + 136 114562369 - Sfri_1191 - flagellar biosynthesis protein, FliO 1182 40.55 0 1402201..1402962 + 253 114562370 fliP Sfri_1192 - flagellar biosynthesis protein FliP 1183 39.26 0 1402975..1403244 + 89 114562371 - Sfri_1193 - flagellar biosynthetic protein FliQ 1184 40.67 0 1403248..1404051 + 267 114562372 fliR Sfri_1194 - flagellar biosynthesis protein FliR 1185 41.89 0 1404061..1405194 + 377 114562373 flhB Sfri_1195 - flagellar biosynthesis protein FlhB 1186 42.48 0 1405311..1407410 + 699 114562374 flhA Sfri_1196 - flagellar biosynthesis protein FlhA 1187 42.06 0 1407440..1408825 + 461 114562375 flhF Sfri_1197 - flagellar biosynthesis regulator FlhF 1188 40.25 0 1408830..1409711 + 293 114562376 - Sfri_1198 - cobyrinic acid a,c-diamide synthase 1189 40.00 0 1409704..1410423 + 239 114562377 fliA Sfri_1199 - flagellar biosynthesis sigma factor 1190 38.71 -1 1410480..1410851 + 123 114562378 - Sfri_1200 - response regulator receiver protein 1191 40.24 0 1410865..1411602 + 245 114562379 - Sfri_1201 - chemotaxis phosphatase, CheZ 1192 41.38 0 1411618..1413828 + 736 114562380 - Sfri_1202 - CheA signal transduction histidine kinases 1193 43.02 0 1413859..1415055 + 398 114562381 - Sfri_1203 - chemotaxis-specific methylesterase 1194 40.33 0 1415084..1415512 + 142 114562382 - Sfri_1204 - hypothetical protein 1195 40.88 0 1415558..1416352 + 264 114562383 - Sfri_1205 - cobyrinic acid a,c-diamide synthase 1196 40.26 0 1416336..1417418 + 360 114562384 - Sfri_1206 - CheW protein 1197 37.78 -1 1417421..1417915 + 164 114562385 - Sfri_1207 - CheW protein 1198 41.35 0 1418008..1418406 + 132 114562386 - Sfri_1208 - hypothetical protein 1199 42.19 0 1418495..1419871 - 458 114562387 - Sfri_1209 - Fmu (Sun) domain-containing protein 1200 39.14 0 1420316..1420987 - 223 114562388 - Sfri_1210 - hypothetical protein 1201 41.90 0 1421457..1421888 + 143 114562389 - Sfri_1211 - hypothetical protein 1202 41.50 0 1421892..1422797 + 301 114562390 - Sfri_1212 - alpha-L-glutamate ligases, RimK family protein 1203 42.80 0 1422797..1423810 + 337 114562391 - Sfri_1213 - succinylglutamate desuccinylase/aspartoacylase 1204 42.68 0 1424345..1425928 + 527 114562392 - Sfri_1214 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1205 41.34 0 1426034..1428070 - 678 114562393 - Sfri_1215 - methyl-accepting chemotaxis sensory transducer 1206 40.40 0 1428443..1429135 + 230 114562394 - Sfri_1216 - fumarylacetoacetate (FAA) hydrolase 1207 44.57 0 1429234..1429491 - 85 114562395 - Sfri_1217 - hypothetical protein 1208 47.27 +1 1429556..1431184 - 542 114562396 - Sfri_1218 - 2-nitropropane dioxygenase, NPD 1209 45.08 0 1431202..1437159 - 1985 114562397 - Sfri_1219 - Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 1210 47.09 +1 1437156..1439249 - 697 114562398 - Sfri_1220 - omega-3 polyunsaturated fatty acid synthase PfaB 1211 46.46 +1 1439246..1447108 - 2620 114562399 - Sfri_1221 - beta-ketoacyl synthase 1212 43.99 0 1447092..1447973 - 293 114562400 - Sfri_1222 - transcriptional regulator, putative 1213 45.85 +1 1448419..1449417 - 332 114562401 - Sfri_1223 - hypothetical protein 1214 43.63 0 1449419..1449952 - 177 114562402 - Sfri_1224 - sigma-70 factor 1215 45.15 0 1449949..1450515 - 188 114562403 - Sfri_1225 - hypothetical protein 1216 43.73 0 1450521..1451174 - 217 114562404 - Sfri_1226 - MotA/TolQ/ExbB proton channel 1217 42.94 0 1451307..1451660 - 117 114562405 - Sfri_1227 - hypothetical protein 1218 44.95 0 1451662..1452453 - 263 114562406 - Sfri_1228 - TPR repeat-containing protein 1219 43.53 0 1452440..1455490 - 1016 114562407 - Sfri_1229 - TPR repeat-containing protein 1220 43.15 0 1455490..1457568 - 692 114562408 - Sfri_1230 - hypothetical protein 1221 41.53 0 1457728..1458288 - 186 114562409 - Sfri_1231 - helix-turn-helix, AraC type 1222 43.81 0 1458343..1459506 - 387 114562410 - Sfri_1232 - hypothetical protein 1223 49.81 +2 1459484..1459744 - 86 114562411 - Sfri_1233 - putative lipoprotein 1224 43.25 0 1459749..1460252 - 167 114562412 - Sfri_1234 - redoxin domain-containing protein 1225 44.08 0 1460330..1460962 - 210 114562413 - Sfri_1235 - hypothetical protein 1226 43.05 0 1460962..1461702 - 246 114562414 - Sfri_1236 - hypothetical protein 1227 45.37 +1 1461760..1464417 - 885 114562415 - Sfri_1237 - hypothetical protein 1228 43.97 0 1464721..1465989 + 422 114562416 - Sfri_1238 - hypothetical protein 1229 44.71 0 1466004..1468430 + 808 114562417 - Sfri_1239 - hypothetical protein 1230 47.15 +1 1468575..1470152 + 525 114562418 - Sfri_1240 - twin-arginine translocation pathway signal 1231 30.73 -2 1470805..1471881 + 358 114562419 - Sfri_1241 - hypothetical protein 1232 39.52 0 1472307..1473050 + 247 114562420 - Sfri_1242 - hypothetical protein 1233 34.17 -2 1473171..1473650 + 159 114562421 - Sfri_1243 - hypothetical protein 1234 42.98 0 1473891..1474937 - 348 114562422 - Sfri_1244 - ApbE family lipoprotein 1235 44.08 0 1475090..1476085 + 331 114562423 - Sfri_1245 - 4'-phosphopantetheinyl transferase 1236 41.87 0 1476242..1478233 - 663 114562424 - Sfri_1246 - beta-lactamase domain-containing protein 1237 41.90 0 1478449..1479405 + 318 114562425 - Sfri_1247 - transcriptional regulator, LysR family protein 1238 41.26 0 1479554..1480411 - 285 114562426 queF Sfri_1248 - 7-cyano-7-deazaguanine reductase 1239 38.56 -1 1480466..1481116 + 216 114562427 - Sfri_1249 - SecY interacting protein Syd 1240 41.53 0 1481231..1483951 - 906 114562428 - Sfri_1250 - hypothetical protein 1241 45.35 +1 1483960..1484733 - 257 114562429 - Sfri_1251 - hypothetical protein 1242 43.44 0 1484734..1485099 - 121 114562430 - Sfri_1252 - hypothetical protein 1243 41.15 0 1485259..1485642 + 127 114562431 - Sfri_1253 - hypothetical protein 1244 36.71 -1 1485677..1485913 - 78 114562432 - Sfri_1254 - hypothetical protein 1245 42.86 0 1486087..1486716 + 209 114562433 - Sfri_1255 - GCN5-related N-acetyltransferase 1246 37.86 -1 1486786..1487094 + 102 114562434 - Sfri_1256 - hypothetical protein 1247 48.42 +2 1488253..1489299 + 348 114562435 - Sfri_1257 - oxidoreductase domain-containing protein 1248 37.71 -1 1490579..1491286 + 235 114562436 - Sfri_1258 - hypothetical protein 1249 41.09 0 1491381..1491767 - 128 114562437 - Sfri_1259 - hypothetical protein 1250 40.73 0 1491764..1492777 - 337 114562438 - Sfri_1260 - hypothetical protein 1251 39.94 0 1492826..1493188 + 120 114562439 - Sfri_1261 - hypothetical protein 1252 40.70 0 1493272..1494153 + 293 114562440 - Sfri_1262 - pseudouridylate synthase 1253 41.72 0 1494481..1494945 + 154 114562441 - Sfri_1263 - flavodoxin 1254 43.61 0 1494897..1496375 + 492 114562442 - Sfri_1264 - PTS system, glucose-like IIB subunint 1255 37.34 -1 1496555..1497427 + 290 114562443 purU Sfri_1265 - formyltetrahydrofolate deformylase 1256 39.19 0 1497594..1499489 + 631 114562444 - Sfri_1266 - metal dependent phosphohydrolase 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0