version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 65 43.65 0 79500..80216 + 238 114561253 - Sfri_0065 - ZIP zinc transporter family protein 66 38.76 -1 80276..80662 + 128 114561254 - Sfri_0066 - hypothetical protein 67 40.09 0 80778..81221 + 147 114561255 - Sfri_0067 - acetyltransferase, GNAT family protein 68 47.36 +1 81492..82361 + 289 114561256 - Sfri_0068 - hypothetical protein 69 43.04 0 82458..83498 - 346 114561257 - Sfri_0069 - hypothetical protein 70 38.94 -1 83717..84376 + 219 114561258 - Sfri_0070 - hypothetical protein 71 37.54 -1 84393..86246 - 617 114561259 - Sfri_0071 - TPR repeat-containing protein 72 39.34 0 86474..86806 + 110 114561260 - Sfri_0072 - small multidrug resistance protein 73 45.37 +1 87004..88191 - 395 114561261 - Sfri_0073 - iron-containing alcohol dehydrogenase 74 41.15 0 88420..89289 + 289 114561262 - Sfri_0074 - transcriptional regulator, AraC family protein 75 41.21 0 89357..89686 + 109 114561263 - Sfri_0075 - hypothetical protein 76 41.18 0 90025..91362 + 445 114561264 - Sfri_0076 - coproporphyrinogen III oxidase 77 47.04 +1 91451..92296 + 281 114561265 - Sfri_0077 - ribokinase-like domain-containing protein 78 43.87 0 92590..93282 + 230 114561266 - Sfri_0078 - MOSC domain-containing protein 79 38.06 -1 93339..93698 + 119 114561267 - Sfri_0079 - hypothetical protein 80 42.60 0 93795..95705 - 636 114561268 - Sfri_0080 - methyl-accepting chemotaxis sensory transducer 81 42.91 0 95924..97573 - 549 114561269 - Sfri_0081 - electron-transferring-flavoprotein dehydrogenase 82 41.52 0 97897..98910 + 337 114561270 moaA Sfri_0082 - molybdenum cofactor biosynthesis protein A 83 45.91 +1 98997..99473 + 158 114561271 moaC Sfri_0083 - molybdenum cofactor biosynthesis protein C 84 46.59 +1 99538..99786 + 82 114561272 - Sfri_0084 - molybdopterin converting factor, subunit 1 85 43.31 0 99788..100258 + 156 114561273 - Sfri_0085 - molybdopterin biosynthesis MoaE 86 44.60 0 100290..101141 + 283 114561274 - Sfri_0086 - molybdenum ABC transporter, periplasmic molybdate-binding protein 87 44.64 0 101141..101821 + 226 114561275 - Sfri_0087 - molybdate ABC transporter, inner membrane subunit 88 44.83 0 101802..102923 + 373 114561276 - Sfri_0088 - ABC transporter related 89 38.89 -1 103294..103815 + 173 114561277 - Sfri_0089 - hypothetical protein 90 40.50 0 103823..104506 + 227 114561278 - Sfri_0090 - two component transcriptional regulator, winged helix family protein 91 42.83 0 104574..105815 + 413 114561279 - Sfri_0091 - periplasmic sensor signal transduction histidine kinase 92 41.30 0 105856..106533 + 225 114561280 - Sfri_0092 - pseudouridine synthase Rlu family protein 93 38.72 -1 106610..107890 - 426 114561281 - Sfri_0093 - diguanylate cyclase 94 33.33 -2 107995..108162 + 55 114561282 - Sfri_0094 - hypothetical protein 95 43.00 0 108277..108483 + 68 114561283 - Sfri_0095 - hypothetical protein 96 42.67 0 108516..109286 - 256 114561284 - Sfri_0096 - molybdopterin biosynthesis protein MoeB 97 43.22 0 109294..110547 - 417 114561285 - Sfri_0097 - molybdenum cofactor synthesis domain-containing protein 98 38.58 -1 110654..110977 + 107 114561286 - Sfri_0098 - excinuclease ABC subunit C 99 41.28 0 111080..111973 + 297 114561287 - Sfri_0099 - hypothetical protein 100 43.23 0 112015..113874 - 619 114561288 - Sfri_0100 - peptidase M14, carboxypeptidase A 101 45.40 +1 114063..115604 - 513 114561289 - Sfri_0101 - phosphoenolpyruvate carboxykinase 102 41.23 0 115874..116734 - 286 114561290 hslO Sfri_0102 - Hsp33-like chaperonin 103 41.60 0 116760..117158 - 132 114561291 - Sfri_0103 - RNA-binding S4 domain-containing protein 104 41.86 0 117423..118337 + 304 114561292 - Sfri_0104 - general secretion pathway protein C 105 42.99 0 118362..120494 + 710 114561293 - Sfri_0105 - general secretion pathway protein D 106 43.11 0 120502..122046 + 514 114561294 - Sfri_0106 - general secretory pathway protein E 107 45.99 +1 122050..123282 + 410 114561295 - Sfri_0107 - general secretion pathway protein F 108 40.00 0 123379..123813 + 144 114561296 - Sfri_0108 - general secretion pathway protein G 109 41.54 0 123815..124387 + 190 114561297 - Sfri_0109 - general secretion pathway protein H 110 43.38 0 124380..124817 + 145 114561298 - Sfri_0110 - general secretion pathway protein I 111 43.32 0 124798..125508 + 236 114561299 - Sfri_0111 - general secretion pathway protein J 112 42.76 0 125508..126494 + 328 114561300 - Sfri_0112 - general secretion pathway protein K 113 42.79 0 126546..127751 + 401 114561301 - Sfri_0113 - general secretion pathway protein L 114 43.82 0 127753..128229 + 158 114561302 - Sfri_0114 - general secretion pathway M protein 115 40.68 0 128239..129000 + 253 114561303 - Sfri_0115 - type II secretion system protein N 116 41.44 0 129169..129834 - 221 114561304 - Sfri_0116 - HAD family hydrolase 117 41.50 0 129912..130499 + 195 114561305 nudE Sfri_0117 - ADP-ribose diphosphatase NudE 118 42.35 0 130616..131425 + 269 114561306 - Sfri_0118 - 3'(2'),5'-bisphosphate nucleotidase 119 40.24 0 131666..132766 - 366 114561307 - Sfri_0119 - tRNA 2-selenouridine synthase 120 44.79 0 132766..133821 - 351 114561308 - Sfri_0120 - selenide, water dikinase 121 40.81 0 134018..134632 + 204 114561309 - Sfri_0121 - putative transcriptional regulator, TetR family protein 122 41.84 0 134619..136475 + 618 114561310 - Sfri_0122 - phospholipid/glycerol acyltransferase 123 40.54 0 136557..137666 - 369 114561311 - Sfri_0123 - stearoyl-CoA 9-desaturase 124 45.31 +1 137823..138440 + 205 114561312 - Sfri_0124 - DNA-binding transcriptional repressor FabR 125 39.34 0 138520..139617 - 365 114561313 - Sfri_0125 - tRNA (uracil-5-)-methyltransferase 126 39.62 0 139747..140526 + 259 114561314 - Sfri_0126 - glutamate racemase 127 42.12 0 140574..141017 - 147 114561315 - Sfri_0127 - RNP-1 like RNA-binding protein 128 31.75 -2 147215..147340 + 41 114561316 - Sfri_0128 - hypothetical protein 129 45.88 +1 147337..147870 - 177 114561317 - Sfri_0129 - ISSod10, transposase OrfB 130 40.42 0 147884..148363 - 159 114561318 - Sfri_0130 - ISSod10, transposase OrfA 131 38.74 -1 148584..149600 + 338 114561319 - Sfri_0131 - UDP-N-acetylenolpyruvoylglucosamine reductase 132 39.46 0 149597..150559 + 320 114561320 - Sfri_0132 - biotin--protein ligase 133 40.17 0 150596..151546 - 316 114561321 - Sfri_0133 - pantothenate kinase 134 44.81 0 152246..153430 + 394 114561322 - Sfri_0134 - elongation factor Tu 135 41.67 0 153699..154070 + 123 114561323 secE Sfri_0135 - preprotein translocase subunit SecE 136 41.30 0 154081..154632 + 183 114561324 - Sfri_0136 - NusG antitermination factor 137 41.96 0 154762..155190 + 142 114561325 rplK Sfri_0137 - 50S ribosomal protein L11 138 42.88 0 155195..155896 + 233 114561326 rplA Sfri_0138 - 50S ribosomal protein L1 139 46.51 +1 156173..156673 + 166 114561327 rplJ Sfri_0139 - 50S ribosomal protein L10 140 42.90 0 156728..157093 + 121 114561328 - Sfri_0140 - ribosomal protein L7/L12 141 43.03 0 157329..161360 + 1343 114561329 - Sfri_0141 - DNA-directed RNA polymerase, beta subunit 142 44.36 0 161443..165669 + 1408 114561330 - Sfri_0142 - DNA-directed RNA polymerase subunit beta' 143 47.73 +1 165847..166221 + 124 114561331 rpsL Sfri_0143 - 30S ribosomal protein S12 144 45.44 +1 166304..166774 + 156 114561332 - Sfri_0144 - 30S ribosomal protein S7 145 44.35 0 166853..168949 + 698 114561333 - Sfri_0145 - elongation factor G 146 44.64 0 169019..170203 + 394 114561334 - Sfri_0146 - elongation factor Tu 147 44.87 0 170557..170868 + 103 114561335 - Sfri_0147 - ribosomal protein S10 148 45.23 +1 170896..171534 + 212 114561336 rplC Sfri_0148 - 50S ribosomal protein L3 149 45.87 +1 171552..172157 + 201 114561337 rplD Sfri_0149 - 50S ribosomal protein L4 150 42.90 0 172154..172456 + 100 114561338 rplW Sfri_0150 - 50S ribosomal protein L23 151 48.85 +2 172473..173297 + 274 114561339 rplB Sfri_0151 - 50S ribosomal protein L2 152 47.31 +1 173312..173590 + 92 114561340 rpsS Sfri_0152 - 30S ribosomal protein S19 153 47.75 +1 173606..173938 + 110 114561341 rplV Sfri_0153 - 50S ribosomal protein L22 154 45.36 +1 173951..174640 + 229 114561342 rpsC Sfri_0154 - 30S ribosomal protein S3 155 46.23 +1 174652..175062 + 136 114561343 rplP Sfri_0155 - 50S ribosomal protein L16 156 43.23 0 175062..175253 + 63 114561344 - Sfri_0156 - 50S ribosomal protein L29 157 39.36 0 175253..175501 + 82 114561345 - Sfri_0157 - ribosomal protein S17 158 47.15 +1 175678..176046 + 122 114561346 rplN Sfri_0158 - 50S ribosomal protein L14 159 43.17 0 176057..176371 + 104 114561347 rplX Sfri_0159 - 50S ribosomal protein L24 160 43.33 0 176385..176924 + 179 114561348 rplE Sfri_0160 - 50S ribosomal protein L5 161 47.06 +1 176935..177240 + 101 114561349 rpsN Sfri_0161 - 30S ribosomal protein S14 162 45.29 +1 177265..177657 + 130 114561350 rpsH Sfri_0162 - 30S ribosomal protein S8 163 44.19 0 177668..178201 + 177 114561351 rplF Sfri_0163 - 50S ribosomal protein L6 164 49.29 +2 178212..178562 + 116 114561352 rplR Sfri_0164 - 50S ribosomal protein L18 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.