version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1080 43.06 0 1288828..1290153 + 441 114562268 - Sfri_1090 - serine/threonine protein kinase 1081 43.23 0 1290354..1290545 + 63 114562269 - Sfri_1091 - hypothetical protein 1082 42.90 0 1290796..1291140 + 114 114562270 - Sfri_1092 - alkylphosphonate utilization operon protein PhnA 1083 36.78 -1 1291785..1292393 - 202 114562271 - Sfri_1093 - Sel1 domain-containing protein 1084 40.49 0 1293504..1293992 - 162 114562272 smpB Sfri_1094 - SsrA-binding protein 1085 40.92 0 1294245..1294679 + 144 114562273 - Sfri_1095 - cyclase/dehydrase 1086 38.69 -1 1294672..1295007 + 111 114562274 - Sfri_1096 - hypothetical protein 1087 40.87 0 1295193..1295696 - 167 114562275 - Sfri_1097 - SmpA/OmlA domain-containing protein 1088 42.26 0 1296011..1296850 + 279 114562276 - Sfri_1098 - uroporphyrin-III C/tetrapyrrole methyltransferase 1089 37.09 -1 1297165..1297377 + 70 114562277 - Sfri_1099 - hypothetical protein 1090 36.86 -1 1297400..1299130 + 576 114562278 - Sfri_1100 - diguanylate cyclase 1091 41.86 0 1300467..1302119 + 550 114562279 - Sfri_1101 - malate synthase 1092 43.96 0 1302210..1303526 + 438 114562280 - Sfri_1102 - isocitrate lyase 1093 41.65 0 1304050..1305504 + 484 114562281 - Sfri_1103 - putative signal transduction protein 1094 41.58 0 1305614..1306219 - 201 114562282 - Sfri_1104 - hypothetical protein 1095 41.33 0 1306269..1307093 - 274 114562283 - Sfri_1105 - hypothetical protein 1096 37.12 -1 1307451..1307873 - 140 114562284 - Sfri_1106 - transcriptional regulator, CopG family protein 1097 42.70 0 1307833..1308579 - 248 114562285 - Sfri_1107 - hypothetical protein 1098 37.96 -1 1309353..1309568 + 71 114562286 - Sfri_1108 - hypothetical protein 1099 38.76 -1 1309638..1310171 - 177 114562287 - Sfri_1109 - GCN5-related N-acetyltransferase 1100 40.59 0 1310200..1310502 - 100 114562288 - Sfri_1110 - NrfJ-related protein 1101 43.06 0 1310693..1312429 - 578 114562289 - Sfri_1111 - metallophosphoesterase 1102 38.87 -1 1312652..1313734 - 360 114562290 - Sfri_1112 - hypothetical protein 1103 40.55 0 1313849..1314970 + 373 114562291 - Sfri_1113 - hypothetical protein 1104 41.09 0 1315002..1315787 + 261 114562292 - Sfri_1114 - type IV pilus biogenesis/stability protein PilW 1105 42.23 0 1315787..1316764 + 325 114562293 - Sfri_1115 - hypothetical protein 1106 43.73 0 1316796..1317911 + 371 114562294 ispG Sfri_1116 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1107 43.61 0 1318010..1319284 + 424 114562295 - Sfri_1117 - histidyl-tRNA synthetase 1108 43.16 0 1319311..1319931 + 206 114562296 - Sfri_1118 - hypothetical protein 1109 43.28 0 1319944..1321179 + 411 114562297 - Sfri_1119 - outer membrane protein assembly complex subunit YfgL 1110 44.51 0 1321283..1322749 + 488 114562298 engA Sfri_1120 - GTP-binding protein EngA 1111 44.76 0 1322949..1323158 + 69 114562299 - Sfri_1121 - hypothetical protein 1112 40.55 0 1323175..1323576 - 133 114562300 - Sfri_1122 - hypothetical protein 1113 41.80 0 1323714..1324280 + 188 114562301 - Sfri_1123 - cytochrome B561 1114 40.48 0 1324364..1324909 + 181 114562302 - Sfri_1124 - redoxin domain-containing protein 1115 45.00 0 1324914..1325153 + 79 114562303 - Sfri_1125 - putative lipoprotein 1116 43.11 0 1325144..1326442 + 432 114562304 - Sfri_1126 - hypothetical protein 1117 44.59 0 1326499..1327395 + 298 114562305 - Sfri_1127 - ApbE family lipoprotein 1118 38.18 -1 1327412..1328071 + 219 114562306 - Sfri_1128 - two component transcriptional regulator, winged helix family protein 1119 40.60 0 1328158..1329561 + 467 114562307 - Sfri_1129 - periplasmic sensor signal transduction histidine kinase 1120 46.29 +1 1329668..1331203 - 511 114562308 - Sfri_1130 - hypothetical protein 1121 41.23 0 1331379..1332707 - 442 114562309 - Sfri_1131 - periplasmic sensor signal transduction histidine kinase 1122 39.77 0 1332700..1333383 - 227 114562310 - Sfri_1132 - two component transcriptional regulator, winged helix family protein 1123 43.70 0 1333387..1333743 - 118 114562311 - Sfri_1133 - peptidase 1124 43.31 0 1334085..1334966 + 293 114562312 - Sfri_1134 - hypothetical protein 1125 43.81 0 1335069..1335746 + 225 114562313 - Sfri_1135 - OmpA/MotB domain-containing protein 1126 43.90 0 1335999..1337351 - 450 114562314 xseA Sfri_1136 - exodeoxyribonuclease VII large subunit 1127 44.99 0 1337458..1338924 + 488 114562315 - Sfri_1137 - inositol-5-monophosphate dehydrogenase 1128 43.54 0 1339029..1340606 + 525 114562316 guaA Sfri_1138 - bifunctional GMP synthase/glutamine amidotransferase protein 1129 46.14 +1 1340706..1341275 + 189 114562317 - Sfri_1139 - CMP/dCMP deaminase, zinc-binding 1130 42.63 0 1341591..1343021 - 476 114562318 - Sfri_1140 - lytic transglycosylase, catalytic 1131 45.13 0 1343377..1347258 + 1293 114562319 - Sfri_1141 - phosphoribosylformylglycinamidine synthase 1132 43.22 0 1348398..1349954 + 518 114562320 - Sfri_1142 - cytochrome bd ubiquinol oxidase, subunit I 1133 41.93 0 1349970..1351109 + 379 114562321 - Sfri_1143 - cytochrome d ubiquinol oxidase, subunit II 1134 37.84 -1 1351127..1351237 + 36 114562322 - Sfri_1144 - cyd operon protein YbgT 1135 43.33 0 1351601..1352050 + 149 114562323 - Sfri_1145 - host cell attachment-required protein 1136 39.36 0 1352295..1354301 - 668 114562324 - Sfri_1146 - methyl-accepting chemotaxis sensory transducer 1137 44.49 0 1354448..1357513 - 1021 114562325 - Sfri_1147 - acriflavin resistance protein 1138 42.60 0 1357510..1358631 - 373 114562326 - Sfri_1148 - RND family efflux transporter MFP subunit 1139 38.91 -1 1358846..1359526 + 226 114562327 - Sfri_1149 - transcriptional regulator, TetR family protein 1140 43.73 0 1359660..1360592 + 310 114562328 - Sfri_1150 - hypothetical protein 1141 43.18 0 1360676..1361122 - 148 114562329 - Sfri_1151 - hypothetical protein 1142 44.30 0 1361119..1361829 - 236 114562330 - Sfri_1152 - hypothetical protein 1143 43.42 0 1362099..1363307 + 402 114562331 - Sfri_1153 - hypothetical protein 1144 40.62 0 1363799..1364278 + 159 114562332 - Sfri_1154 - hypothetical protein 1145 41.35 0 1364359..1364919 + 186 114562333 - Sfri_1155 - hypothetical protein 1146 43.67 0 1365076..1365549 - 157 114562334 - Sfri_1156 - FlgN family protein 1147 45.15 0 1365652..1365981 - 109 114562335 - Sfri_1157 - anti-sigma-28 factor, FlgM 1148 38.84 -1 1366056..1366763 - 235 114562336 flgA Sfri_1158 - flagellar basal body P-ring biosynthesis protein FlgA 1149 38.65 -1 1367134..1368054 + 306 114562337 - Sfri_1159 - response regulator receiver modulated CheW protein 1150 40.29 0 1368127..1368960 + 277 114562338 - Sfri_1160 - MCP methyltransferase, CheR-type 1151 39.85 0 1369097..1369495 + 132 114562339 flgB Sfri_1161 - flagellar basal body rod protein FlgB 1152 40.77 0 1369498..1369914 + 138 114562340 flgC Sfri_1162 - flagellar basal body rod protein FlgC 1153 42.24 0 1369938..1370723 + 261 114562341 flgD Sfri_1163 - flagellar basal body rod modification protein 1154 43.70 0 1370784..1372163 + 459 114562342 flgE Sfri_1164 - flagellar hook protein FlgE 1155 46.24 +1 1372452..1373195 + 247 114562343 flgF Sfri_1165 - flagellar basal body rod protein FlgF 1156 44.11 0 1373207..1373995 + 262 114562344 flgG Sfri_1166 - flagellar basal body rod protein FlgG 1157 44.74 0 1374005..1374679 + 224 114562345 flgH Sfri_1167 - flagellar basal body L-ring protein 1158 45.53 +1 1374690..1375796 + 368 114562346 flgI Sfri_1168 - flagellar basal body P-ring protein 1159 42.59 0 1375808..1376941 + 377 114562347 flgJ Sfri_1169 - peptidoglycan hydrolase 1160 43.44 0 1376941..1378869 + 642 114562348 - Sfri_1170 - flagellar hook-associated protein FlgK 1161 44.28 0 1378880..1380085 + 401 114562349 flgL Sfri_1171 - flagellar hook-associated protein FlgL 1162 45.96 +1 1380178..1381626 + 482 114562350 - Sfri_1172 - flagellin domain-containing protein 1163 45.78 +1 1381888..1383333 + 481 114562351 - Sfri_1173 - flagellin domain-containing protein 1164 41.78 0 1383550..1383999 + 149 114562352 - Sfri_1174 - flagellar protein FlaG protein 1165 41.76 0 1384065..1385429 + 454 114562353 - Sfri_1175 - flagellar hook-associated 2 domain-containing protein 1166 35.65 -2 1385517..1385861 + 114 114562354 - Sfri_1176 - hypothetical protein 1167 41.73 0 1385868..1386272 + 134 114562355 fliS Sfri_1177 - flagellar protein FliS 1168 42.49 0 1386925..1388355 + 476 114562356 - Sfri_1178 - sigma54 specific transcriptional regulator, Fis family protein 1169 45.10 0 1388861..1389931 + 356 114562357 - Sfri_1179 - PAS/PAC sensor signal transduction histidine kinase 1170 43.19 0 1389924..1391273 + 449 114562358 - Sfri_1180 - two component, sigma54 specific, transcriptional regulator, Fis family protein 1171 45.61 +1 1391514..1391855 + 113 114562359 - Sfri_1181 - flagellar hook-basal body complex subunit FliE 1172 43.77 0 1391931..1393607 + 558 114562360 fliF Sfri_1182 - flagellar MS-ring protein 1173 42.42 0 1393600..1394655 + 351 114562361 fliG Sfri_1183 - flagellar motor switch protein G 1174 43.15 0 1394810..1396021 + 403 114562362 fliH Sfri_1184 - flagellar assembly protein H 1175 46.09 +1 1396002..1397342 + 446 114562363 fliI Sfri_1185 - flagellum-specific ATP synthase 1176 40.04 0 1397348..1397794 + 148 114562364 - Sfri_1186 - flagellar export protein FliJ 1177 41.72 0 1398099..1399637 + 512 114562365 - Sfri_1187 - flagellar hook-length control protein 1178 39.46 0 1399731..1400252 + 173 114562366 fliL Sfri_1188 - flagellar basal body-associated protein FliL 1179 42.57 0 1400282..1401310 + 342 114562367 fliM Sfri_1189 - flagellar motor switch protein FliM 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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