version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1047 42.40 0 1244247..1244996 + 249 114562235 - Sfri_1057 - stationary-phase survival protein SurE 1048 42.92 0 1244993..1245628 + 211 114562236 - Sfri_1058 - protein-L-isoaspartate O-methyltransferase 1049 42.26 0 1245732..1246661 + 309 114562237 - Sfri_1059 - peptidase M23B 1050 40.64 0 1246740..1247711 + 323 114562238 - Sfri_1060 - RNA polymerase, sigma 28 subunit 1051 43.19 0 1248096..1250681 - 861 114562239 - Sfri_1061 - DNA mismatch repair protein 1052 42.44 0 1250967..1252031 + 354 114562240 recA Sfri_1062 - recombinase A 1053 42.93 0 1252831..1255455 + 874 114562241 - Sfri_1063 - alanyl-tRNA synthetase 1054 40.91 0 1255913..1256110 + 65 114562242 - Sfri_1064 - carbon storage regulator, CsrA 1055 44.03 0 1258384..1258626 + 80 114562243 - Sfri_1065 - sodium pump decarboxylases, gamma subunit 1056 45.36 +1 1258640..1260418 + 592 114562244 - Sfri_1066 - pyruvate carboxylase subunit B 1057 43.59 0 1260428..1261558 + 376 114562245 - Sfri_1067 - sodium ion-translocating decarboxylase, beta subunit 1058 40.49 0 1261894..1263165 + 423 114562246 - Sfri_1068 - putative lipoprotein 1059 44.92 0 1263247..1264497 - 416 114562247 - Sfri_1069 - sodium:dicarboxylate symporter 1060 41.26 0 1265066..1265494 + 142 114562248 - Sfri_1070 - hypothetical protein 1061 43.43 0 1265573..1268404 + 943 114562249 - Sfri_1071 - peptidase M16 domain-containing protein 1062 42.22 0 1268748..1270367 + 539 114562250 - Sfri_1072 - glutamate--cysteine ligase 1063 42.99 0 1270370..1270804 + 144 114562251 - Sfri_1073 - hypothetical protein 1064 42.88 0 1270992..1271609 + 205 114562252 - Sfri_1074 - hypothetical protein 1065 45.89 +1 1271876..1272958 - 360 114562253 - Sfri_1075 - phosphoribosylaminoimidazole carboxylase ATPase subunit 1066 47.36 +1 1272958..1273449 - 163 114562254 - Sfri_1076 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 1067 43.83 0 1273755..1275593 + 612 114562255 - Sfri_1077 - von Willebrand factor, type A 1068 44.13 0 1275594..1276232 + 212 114562256 - Sfri_1078 - ECF subfamily RNA polymerase sigma-24 factor 1069 43.46 0 1276229..1277077 + 282 114562257 - Sfri_1079 - hypothetical protein 1070 46.12 +1 1277280..1280564 + 1094 114562258 - Sfri_1080 - peptidase S41 1071 41.32 0 1280681..1281118 - 145 114562259 - Sfri_1081 - OsmC family protein 1072 41.30 0 1281394..1281669 + 91 114562260 - Sfri_1082 - hypothetical protein 1073 44.70 0 1281773..1282423 - 216 114562261 - Sfri_1083 - DSBA oxidoreductase 1074 38.10 -1 1282848..1283204 + 118 114562262 - Sfri_1084 - sigma 54 modulation protein/ribosomal protein S30EA 1075 37.90 -1 1283517..1284590 - 357 114562263 - Sfri_1085 - diguanylate cyclase 1076 43.66 0 1285125..1285850 - 241 114562264 - Sfri_1086 - hypothetical protein 1077 37.82 -1 1286405..1286716 + 103 114562265 - Sfri_1087 - hypothetical protein 1078 42.04 0 1286804..1287400 - 198 114562266 - Sfri_1088 - transcriptional regulator, TetR family protein 1079 44.64 0 1287546..1288589 + 347 114562267 - Sfri_1089 - NADH:flavin oxidoreductase/NADH oxidase 1080 43.06 0 1288828..1290153 + 441 114562268 - Sfri_1090 - serine/threonine protein kinase 1081 43.23 0 1290354..1290545 + 63 114562269 - Sfri_1091 - hypothetical protein 1082 42.90 0 1290796..1291140 + 114 114562270 - Sfri_1092 - alkylphosphonate utilization operon protein PhnA 1083 36.78 -1 1291785..1292393 - 202 114562271 - Sfri_1093 - Sel1 domain-containing protein 1084 40.49 0 1293504..1293992 - 162 114562272 smpB Sfri_1094 - SsrA-binding protein 1085 40.92 0 1294245..1294679 + 144 114562273 - Sfri_1095 - cyclase/dehydrase 1086 38.69 -1 1294672..1295007 + 111 114562274 - Sfri_1096 - hypothetical protein 1087 40.87 0 1295193..1295696 - 167 114562275 - Sfri_1097 - SmpA/OmlA domain-containing protein 1088 42.26 0 1296011..1296850 + 279 114562276 - Sfri_1098 - uroporphyrin-III C/tetrapyrrole methyltransferase 1089 37.09 -1 1297165..1297377 + 70 114562277 - Sfri_1099 - hypothetical protein 1090 36.86 -1 1297400..1299130 + 576 114562278 - Sfri_1100 - diguanylate cyclase 1091 41.86 0 1300467..1302119 + 550 114562279 - Sfri_1101 - malate synthase 1092 43.96 0 1302210..1303526 + 438 114562280 - Sfri_1102 - isocitrate lyase 1093 41.65 0 1304050..1305504 + 484 114562281 - Sfri_1103 - putative signal transduction protein 1094 41.58 0 1305614..1306219 - 201 114562282 - Sfri_1104 - hypothetical protein 1095 41.33 0 1306269..1307093 - 274 114562283 - Sfri_1105 - hypothetical protein 1096 37.12 -1 1307451..1307873 - 140 114562284 - Sfri_1106 - transcriptional regulator, CopG family protein 1097 42.70 0 1307833..1308579 - 248 114562285 - Sfri_1107 - hypothetical protein 1098 37.96 -1 1309353..1309568 + 71 114562286 - Sfri_1108 - hypothetical protein 1099 38.76 -1 1309638..1310171 - 177 114562287 - Sfri_1109 - GCN5-related N-acetyltransferase 1100 40.59 0 1310200..1310502 - 100 114562288 - Sfri_1110 - NrfJ-related protein 1101 43.06 0 1310693..1312429 - 578 114562289 - Sfri_1111 - metallophosphoesterase 1102 38.87 -1 1312652..1313734 - 360 114562290 - Sfri_1112 - hypothetical protein 1103 40.55 0 1313849..1314970 + 373 114562291 - Sfri_1113 - hypothetical protein 1104 41.09 0 1315002..1315787 + 261 114562292 - Sfri_1114 - type IV pilus biogenesis/stability protein PilW 1105 42.23 0 1315787..1316764 + 325 114562293 - Sfri_1115 - hypothetical protein 1106 43.73 0 1316796..1317911 + 371 114562294 ispG Sfri_1116 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1107 43.61 0 1318010..1319284 + 424 114562295 - Sfri_1117 - histidyl-tRNA synthetase 1108 43.16 0 1319311..1319931 + 206 114562296 - Sfri_1118 - hypothetical protein 1109 43.28 0 1319944..1321179 + 411 114562297 - Sfri_1119 - outer membrane protein assembly complex subunit YfgL 1110 44.51 0 1321283..1322749 + 488 114562298 engA Sfri_1120 - GTP-binding protein EngA 1111 44.76 0 1322949..1323158 + 69 114562299 - Sfri_1121 - hypothetical protein 1112 40.55 0 1323175..1323576 - 133 114562300 - Sfri_1122 - hypothetical protein 1113 41.80 0 1323714..1324280 + 188 114562301 - Sfri_1123 - cytochrome B561 1114 40.48 0 1324364..1324909 + 181 114562302 - Sfri_1124 - redoxin domain-containing protein 1115 45.00 0 1324914..1325153 + 79 114562303 - Sfri_1125 - putative lipoprotein 1116 43.11 0 1325144..1326442 + 432 114562304 - Sfri_1126 - hypothetical protein 1117 44.59 0 1326499..1327395 + 298 114562305 - Sfri_1127 - ApbE family lipoprotein 1118 38.18 -1 1327412..1328071 + 219 114562306 - Sfri_1128 - two component transcriptional regulator, winged helix family protein 1119 40.60 0 1328158..1329561 + 467 114562307 - Sfri_1129 - periplasmic sensor signal transduction histidine kinase 1120 46.29 +1 1329668..1331203 - 511 114562308 - Sfri_1130 - hypothetical protein 1121 41.23 0 1331379..1332707 - 442 114562309 - Sfri_1131 - periplasmic sensor signal transduction histidine kinase 1122 39.77 0 1332700..1333383 - 227 114562310 - Sfri_1132 - two component transcriptional regulator, winged helix family protein 1123 43.70 0 1333387..1333743 - 118 114562311 - Sfri_1133 - peptidase 1124 43.31 0 1334085..1334966 + 293 114562312 - Sfri_1134 - hypothetical protein 1125 43.81 0 1335069..1335746 + 225 114562313 - Sfri_1135 - OmpA/MotB domain-containing protein 1126 43.90 0 1335999..1337351 - 450 114562314 xseA Sfri_1136 - exodeoxyribonuclease VII large subunit 1127 44.99 0 1337458..1338924 + 488 114562315 - Sfri_1137 - inositol-5-monophosphate dehydrogenase 1128 43.54 0 1339029..1340606 + 525 114562316 guaA Sfri_1138 - bifunctional GMP synthase/glutamine amidotransferase protein 1129 46.14 +1 1340706..1341275 + 189 114562317 - Sfri_1139 - CMP/dCMP deaminase, zinc-binding 1130 42.63 0 1341591..1343021 - 476 114562318 - Sfri_1140 - lytic transglycosylase, catalytic 1131 45.13 0 1343377..1347258 + 1293 114562319 - Sfri_1141 - phosphoribosylformylglycinamidine synthase 1132 43.22 0 1348398..1349954 + 518 114562320 - Sfri_1142 - cytochrome bd ubiquinol oxidase, subunit I 1133 41.93 0 1349970..1351109 + 379 114562321 - Sfri_1143 - cytochrome d ubiquinol oxidase, subunit II 1134 37.84 -1 1351127..1351237 + 36 114562322 - Sfri_1144 - cyd operon protein YbgT 1135 43.33 0 1351601..1352050 + 149 114562323 - Sfri_1145 - host cell attachment-required protein 1136 39.36 0 1352295..1354301 - 668 114562324 - Sfri_1146 - methyl-accepting chemotaxis sensory transducer 1137 44.49 0 1354448..1357513 - 1021 114562325 - Sfri_1147 - acriflavin resistance protein 1138 42.60 0 1357510..1358631 - 373 114562326 - Sfri_1148 - RND family efflux transporter MFP subunit 1139 38.91 -1 1358846..1359526 + 226 114562327 - Sfri_1149 - transcriptional regulator, TetR family protein 1140 43.73 0 1359660..1360592 + 310 114562328 - Sfri_1150 - hypothetical protein 1141 43.18 0 1360676..1361122 - 148 114562329 - Sfri_1151 - hypothetical protein 1142 44.30 0 1361119..1361829 - 236 114562330 - Sfri_1152 - hypothetical protein 1143 43.42 0 1362099..1363307 + 402 114562331 - Sfri_1153 - hypothetical protein 1144 40.62 0 1363799..1364278 + 159 114562332 - Sfri_1154 - hypothetical protein 1145 41.35 0 1364359..1364919 + 186 114562333 - Sfri_1155 - hypothetical protein 1146 43.67 0 1365076..1365549 - 157 114562334 - Sfri_1156 - FlgN family protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0