version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1014 37.46 -1 1201920..1203422 + 500 114562202 - Sfri_1024 - diguanylate cyclase/phosphodiesterase 1015 41.44 0 1203488..1203919 - 143 114562203 - Sfri_1025 - thioesterase superfamily protein 1016 37.52 -1 1203954..1204766 - 270 114562204 - Sfri_1026 - amino acid ABC transporter 1017 40.04 0 1205109..1208939 - 1276 114562205 - Sfri_1027 - diguanylate cyclase/phosphodiesterase 1018 44.09 0 1209463..1209936 - 157 114562206 - Sfri_1028 - hypothetical protein 1019 43.19 0 1209954..1213058 - 1034 114562207 - Sfri_1029 - acriflavin resistance protein 1020 43.44 0 1213058..1214155 - 365 114562208 - Sfri_1030 - RND family efflux transporter MFP subunit 1021 35.76 -2 1214419..1215654 - 411 114562209 - Sfri_1031 - hypothetical protein 1022 44.78 0 1215943..1217610 - 555 114562210 - Sfri_1032 - putative ABC transporter ATP-binding protein 1023 42.98 0 1217872..1219125 + 417 114562211 glyA Sfri_1033 - serine hydroxymethyltransferase 1024 45.33 +1 1219240..1219689 + 149 114562212 - Sfri_1034 - transcriptional regulator NrdR 1025 45.64 +1 1219754..1220899 + 381 114562213 - Sfri_1035 - riboflavin biosynthesis protein RibD 1026 44.85 0 1220964..1221623 + 219 114562214 - Sfri_1036 - riboflavin synthase subunit alpha 1027 43.30 0 1221748..1222851 + 367 114562215 - Sfri_1037 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 1028 41.72 0 1222975..1223451 + 158 114562216 - Sfri_1038 - riboflavin synthase 1029 41.73 0 1223465..1223869 + 134 114562217 nusB Sfri_1039 - transcription antitermination protein NusB 1030 41.90 0 1223957..1224913 + 318 114562218 - Sfri_1040 - thiamine-monophosphate kinase 1031 40.85 0 1224924..1225415 + 163 114562219 - Sfri_1041 - phosphatidylglycerophosphatase 1032 36.75 -1 1225547..1226689 - 380 114562220 - Sfri_1042 - hypothetical protein 1033 41.95 0 1226761..1228419 - 552 114562221 - Sfri_1043 - recombination and repair protein 1034 41.28 0 1228548..1229516 - 322 114562222 - Sfri_1044 - auxin efflux carrier 1035 34.83 -2 1229605..1229805 - 66 114562223 - Sfri_1045 - hypothetical protein 1036 39.77 0 1229890..1230495 - 201 114562224 - Sfri_1046 - hypothetical protein 1037 41.83 0 1230476..1233334 - 952 114562225 - Sfri_1047 - hybrid sensory histidine kinase BarA 1038 42.18 0 1233437..1234804 + 455 114562226 rumA Sfri_1048 - 23S rRNA 5-methyluridine methyltransferase 1039 43.42 0 1234926..1237196 + 756 114562227 - Sfri_1049 - (p)ppGpp synthetase I, SpoT/RelA 1040 41.97 0 1237288..1238109 + 273 114562228 mazG Sfri_1050 - nucleoside triphosphate pyrophosphohydrolase 1041 42.19 0 1238224..1239861 + 545 114562229 - Sfri_1051 - CTP synthetase 1042 43.78 0 1240136..1241437 + 433 114562230 eno Sfri_1052 - phosphopyruvate hydratase 1043 38.94 -1 1241538..1241840 + 100 114562231 - Sfri_1053 - septum formation initiator 1044 45.49 +1 1241903..1242601 + 232 114562232 - Sfri_1054 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1045 41.25 0 1242663..1243142 + 159 114562233 - Sfri_1055 - 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1046 42.36 0 1243170..1244243 + 357 114562234 - Sfri_1056 - pseudouridylate synthase 1047 42.40 0 1244247..1244996 + 249 114562235 - Sfri_1057 - stationary-phase survival protein SurE 1048 42.92 0 1244993..1245628 + 211 114562236 - Sfri_1058 - protein-L-isoaspartate O-methyltransferase 1049 42.26 0 1245732..1246661 + 309 114562237 - Sfri_1059 - peptidase M23B 1050 40.64 0 1246740..1247711 + 323 114562238 - Sfri_1060 - RNA polymerase, sigma 28 subunit 1051 43.19 0 1248096..1250681 - 861 114562239 - Sfri_1061 - DNA mismatch repair protein 1052 42.44 0 1250967..1252031 + 354 114562240 recA Sfri_1062 - recombinase A 1053 42.93 0 1252831..1255455 + 874 114562241 - Sfri_1063 - alanyl-tRNA synthetase 1054 40.91 0 1255913..1256110 + 65 114562242 - Sfri_1064 - carbon storage regulator, CsrA 1055 44.03 0 1258384..1258626 + 80 114562243 - Sfri_1065 - sodium pump decarboxylases, gamma subunit 1056 45.36 +1 1258640..1260418 + 592 114562244 - Sfri_1066 - pyruvate carboxylase subunit B 1057 43.59 0 1260428..1261558 + 376 114562245 - Sfri_1067 - sodium ion-translocating decarboxylase, beta subunit 1058 40.49 0 1261894..1263165 + 423 114562246 - Sfri_1068 - putative lipoprotein 1059 44.92 0 1263247..1264497 - 416 114562247 - Sfri_1069 - sodium:dicarboxylate symporter 1060 41.26 0 1265066..1265494 + 142 114562248 - Sfri_1070 - hypothetical protein 1061 43.43 0 1265573..1268404 + 943 114562249 - Sfri_1071 - peptidase M16 domain-containing protein 1062 42.22 0 1268748..1270367 + 539 114562250 - Sfri_1072 - glutamate--cysteine ligase 1063 42.99 0 1270370..1270804 + 144 114562251 - Sfri_1073 - hypothetical protein 1064 42.88 0 1270992..1271609 + 205 114562252 - Sfri_1074 - hypothetical protein 1065 45.89 +1 1271876..1272958 - 360 114562253 - Sfri_1075 - phosphoribosylaminoimidazole carboxylase ATPase subunit 1066 47.36 +1 1272958..1273449 - 163 114562254 - Sfri_1076 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 1067 43.83 0 1273755..1275593 + 612 114562255 - Sfri_1077 - von Willebrand factor, type A 1068 44.13 0 1275594..1276232 + 212 114562256 - Sfri_1078 - ECF subfamily RNA polymerase sigma-24 factor 1069 43.46 0 1276229..1277077 + 282 114562257 - Sfri_1079 - hypothetical protein 1070 46.12 +1 1277280..1280564 + 1094 114562258 - Sfri_1080 - peptidase S41 1071 41.32 0 1280681..1281118 - 145 114562259 - Sfri_1081 - OsmC family protein 1072 41.30 0 1281394..1281669 + 91 114562260 - Sfri_1082 - hypothetical protein 1073 44.70 0 1281773..1282423 - 216 114562261 - Sfri_1083 - DSBA oxidoreductase 1074 38.10 -1 1282848..1283204 + 118 114562262 - Sfri_1084 - sigma 54 modulation protein/ribosomal protein S30EA 1075 37.90 -1 1283517..1284590 - 357 114562263 - Sfri_1085 - diguanylate cyclase 1076 43.66 0 1285125..1285850 - 241 114562264 - Sfri_1086 - hypothetical protein 1077 37.82 -1 1286405..1286716 + 103 114562265 - Sfri_1087 - hypothetical protein 1078 42.04 0 1286804..1287400 - 198 114562266 - Sfri_1088 - transcriptional regulator, TetR family protein 1079 44.64 0 1287546..1288589 + 347 114562267 - Sfri_1089 - NADH:flavin oxidoreductase/NADH oxidase 1080 43.06 0 1288828..1290153 + 441 114562268 - Sfri_1090 - serine/threonine protein kinase 1081 43.23 0 1290354..1290545 + 63 114562269 - Sfri_1091 - hypothetical protein 1082 42.90 0 1290796..1291140 + 114 114562270 - Sfri_1092 - alkylphosphonate utilization operon protein PhnA 1083 36.78 -1 1291785..1292393 - 202 114562271 - Sfri_1093 - Sel1 domain-containing protein 1084 40.49 0 1293504..1293992 - 162 114562272 smpB Sfri_1094 - SsrA-binding protein 1085 40.92 0 1294245..1294679 + 144 114562273 - Sfri_1095 - cyclase/dehydrase 1086 38.69 -1 1294672..1295007 + 111 114562274 - Sfri_1096 - hypothetical protein 1087 40.87 0 1295193..1295696 - 167 114562275 - Sfri_1097 - SmpA/OmlA domain-containing protein 1088 42.26 0 1296011..1296850 + 279 114562276 - Sfri_1098 - uroporphyrin-III C/tetrapyrrole methyltransferase 1089 37.09 -1 1297165..1297377 + 70 114562277 - Sfri_1099 - hypothetical protein 1090 36.86 -1 1297400..1299130 + 576 114562278 - Sfri_1100 - diguanylate cyclase 1091 41.86 0 1300467..1302119 + 550 114562279 - Sfri_1101 - malate synthase 1092 43.96 0 1302210..1303526 + 438 114562280 - Sfri_1102 - isocitrate lyase 1093 41.65 0 1304050..1305504 + 484 114562281 - Sfri_1103 - putative signal transduction protein 1094 41.58 0 1305614..1306219 - 201 114562282 - Sfri_1104 - hypothetical protein 1095 41.33 0 1306269..1307093 - 274 114562283 - Sfri_1105 - hypothetical protein 1096 37.12 -1 1307451..1307873 - 140 114562284 - Sfri_1106 - transcriptional regulator, CopG family protein 1097 42.70 0 1307833..1308579 - 248 114562285 - Sfri_1107 - hypothetical protein 1098 37.96 -1 1309353..1309568 + 71 114562286 - Sfri_1108 - hypothetical protein 1099 38.76 -1 1309638..1310171 - 177 114562287 - Sfri_1109 - GCN5-related N-acetyltransferase 1100 40.59 0 1310200..1310502 - 100 114562288 - Sfri_1110 - NrfJ-related protein 1101 43.06 0 1310693..1312429 - 578 114562289 - Sfri_1111 - metallophosphoesterase 1102 38.87 -1 1312652..1313734 - 360 114562290 - Sfri_1112 - hypothetical protein 1103 40.55 0 1313849..1314970 + 373 114562291 - Sfri_1113 - hypothetical protein 1104 41.09 0 1315002..1315787 + 261 114562292 - Sfri_1114 - type IV pilus biogenesis/stability protein PilW 1105 42.23 0 1315787..1316764 + 325 114562293 - Sfri_1115 - hypothetical protein 1106 43.73 0 1316796..1317911 + 371 114562294 ispG Sfri_1116 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1107 43.61 0 1318010..1319284 + 424 114562295 - Sfri_1117 - histidyl-tRNA synthetase 1108 43.16 0 1319311..1319931 + 206 114562296 - Sfri_1118 - hypothetical protein 1109 43.28 0 1319944..1321179 + 411 114562297 - Sfri_1119 - outer membrane protein assembly complex subunit YfgL 1110 44.51 0 1321283..1322749 + 488 114562298 engA Sfri_1120 - GTP-binding protein EngA 1111 44.76 0 1322949..1323158 + 69 114562299 - Sfri_1121 - hypothetical protein 1112 40.55 0 1323175..1323576 - 133 114562300 - Sfri_1122 - hypothetical protein 1113 41.80 0 1323714..1324280 + 188 114562301 - Sfri_1123 - cytochrome B561 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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