version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 973 42.55 0 1147902..1149875 + 657 114562161 - Sfri_0983 - ATP-dependent metalloprotease FtsH 974 44.44 0 1149915..1150778 + 287 114562162 - Sfri_0984 - dihydropteroate synthase 975 43.72 0 1150833..1152170 + 445 114562163 - Sfri_0985 - phosphoglucosamine mutase 976 44.57 0 1152310..1153092 + 260 114562164 - Sfri_0986 - Triose-phosphate isomerase 977 43.45 0 1153097..1153432 + 111 114562165 secG Sfri_0987 - preprotein translocase subunit SecG 978 38.96 -1 1153817..1154314 + 165 114562166 - Sfri_0988 - hypothetical protein 979 43.80 0 1154346..1155845 + 499 114562167 nusA Sfri_0989 - transcription elongation factor NusA 980 43.80 0 1155871..1158516 + 881 114562168 infB Sfri_0990 - translation initiation factor IF-2 981 40.97 0 1158583..1159014 + 143 114562169 rbfA Sfri_0991 - ribosome-binding factor A 982 42.87 0 1159014..1159967 + 317 114562170 - Sfri_0992 - tRNA pseudouridine synthase B 983 41.11 0 1160109..1160378 + 89 114562171 rpsO Sfri_0993 - 30S ribosomal protein S15 984 38.88 -1 1161509..1163545 - 678 114562172 - Sfri_0994 - diguanylate cyclase/phosphodiesterase 985 42.30 0 1163942..1166038 + 698 114562173 - Sfri_0995 - polynucleotide phosphorylase/polyadenylase 986 39.69 0 1166185..1167096 + 303 114562174 - Sfri_0996 - lipoprotein NlpI 987 41.94 0 1167173..1168753 + 526 114562175 prfC Sfri_0997 - peptide chain release factor 3 988 35.82 -2 1168835..1169035 + 66 114562176 - Sfri_0998 - hypothetical protein 989 37.93 -1 1169028..1169789 + 253 114562177 - Sfri_0999 - TatD-related deoxyribonuclease 990 40.38 0 1169967..1171229 + 420 114562178 - Sfri_1000 - nucleoside transporter 991 40.83 0 1171592..1172431 + 279 114562179 - Sfri_1001 - nucleoside-specific channel-forming protein, Tsx 992 40.57 0 1172811..1173584 + 257 114562180 - Sfri_1002 - deoxyribose-phosphate aldolase 993 43.02 0 1173712..1175043 + 443 114562181 deoA Sfri_1003 - thymidine phosphorylase 994 42.12 0 1175056..1176273 + 405 114562182 - Sfri_1004 - phosphopentomutase 995 40.79 0 1176375..1177085 + 236 114562183 deoD Sfri_1005 - purine nucleoside phosphorylase 996 37.37 -1 1177161..1177853 - 230 114562184 - Sfri_1006 - membrane protein 997 41.03 0 1178016..1179002 + 328 114562185 - Sfri_1007 - phosphoserine phosphatase SerB 998 41.80 0 1179121..1180029 + 302 114562186 - Sfri_1008 - hypothetical protein 999 38.20 -1 1180179..1182563 - 794 114562187 - Sfri_1009 - type IV pilus assembly PilZ 1000 41.67 0 1182995..1184374 + 459 114562188 - Sfri_1010 - DNA repair protein RadA 1001 40.44 0 1184464..1184829 - 121 114562189 - Sfri_1011 - type IV pilus assembly PilZ 1002 39.39 0 1184987..1186339 - 450 114562190 - Sfri_1012 - nucleoside recognition domain-containing protein 1003 41.61 0 1186708..1187649 - 313 114562191 - Sfri_1013 - peptidase U32 1004 45.51 +1 1187659..1188660 - 333 114562192 - Sfri_1014 - peptidase U32 1005 41.37 0 1188801..1189298 + 165 114562193 - Sfri_1015 - hypothetical protein 1006 47.02 +1 1189402..1189569 - 55 114562194 - Sfri_1016 - ferredoxin, 4Fe-4S 1007 44.56 0 1189733..1191193 - 486 114562195 - Sfri_1017 - Ig-like, group 2 1008 44.53 0 1191486..1194164 - 892 114562196 - Sfri_1018 - Ig domain-containing protein 1009 45.36 +1 1194719..1197328 + 869 114562197 - Sfri_1019 - PAS/PAC sensor hybrid histidine kinase 1010 43.26 0 1197328..1198878 + 516 114562198 - Sfri_1020 - two component, sigma54 specific, transcriptional regulator, Fis family protein 1011 45.35 +1 1199071..1199328 - 85 114562199 - Sfri_1021 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1012 43.00 0 1199341..1200705 - 454 114562200 - Sfri_1022 - peptidase U32 1013 43.06 0 1200953..1201795 + 280 114562201 - Sfri_1023 - putative signal transduction protein 1014 37.46 -1 1201920..1203422 + 500 114562202 - Sfri_1024 - diguanylate cyclase/phosphodiesterase 1015 41.44 0 1203488..1203919 - 143 114562203 - Sfri_1025 - thioesterase superfamily protein 1016 37.52 -1 1203954..1204766 - 270 114562204 - Sfri_1026 - amino acid ABC transporter 1017 40.04 0 1205109..1208939 - 1276 114562205 - Sfri_1027 - diguanylate cyclase/phosphodiesterase 1018 44.09 0 1209463..1209936 - 157 114562206 - Sfri_1028 - hypothetical protein 1019 43.19 0 1209954..1213058 - 1034 114562207 - Sfri_1029 - acriflavin resistance protein 1020 43.44 0 1213058..1214155 - 365 114562208 - Sfri_1030 - RND family efflux transporter MFP subunit 1021 35.76 -2 1214419..1215654 - 411 114562209 - Sfri_1031 - hypothetical protein 1022 44.78 0 1215943..1217610 - 555 114562210 - Sfri_1032 - putative ABC transporter ATP-binding protein 1023 42.98 0 1217872..1219125 + 417 114562211 glyA Sfri_1033 - serine hydroxymethyltransferase 1024 45.33 +1 1219240..1219689 + 149 114562212 - Sfri_1034 - transcriptional regulator NrdR 1025 45.64 +1 1219754..1220899 + 381 114562213 - Sfri_1035 - riboflavin biosynthesis protein RibD 1026 44.85 0 1220964..1221623 + 219 114562214 - Sfri_1036 - riboflavin synthase subunit alpha 1027 43.30 0 1221748..1222851 + 367 114562215 - Sfri_1037 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 1028 41.72 0 1222975..1223451 + 158 114562216 - Sfri_1038 - riboflavin synthase 1029 41.73 0 1223465..1223869 + 134 114562217 nusB Sfri_1039 - transcription antitermination protein NusB 1030 41.90 0 1223957..1224913 + 318 114562218 - Sfri_1040 - thiamine-monophosphate kinase 1031 40.85 0 1224924..1225415 + 163 114562219 - Sfri_1041 - phosphatidylglycerophosphatase 1032 36.75 -1 1225547..1226689 - 380 114562220 - Sfri_1042 - hypothetical protein 1033 41.95 0 1226761..1228419 - 552 114562221 - Sfri_1043 - recombination and repair protein 1034 41.28 0 1228548..1229516 - 322 114562222 - Sfri_1044 - auxin efflux carrier 1035 34.83 -2 1229605..1229805 - 66 114562223 - Sfri_1045 - hypothetical protein 1036 39.77 0 1229890..1230495 - 201 114562224 - Sfri_1046 - hypothetical protein 1037 41.83 0 1230476..1233334 - 952 114562225 - Sfri_1047 - hybrid sensory histidine kinase BarA 1038 42.18 0 1233437..1234804 + 455 114562226 rumA Sfri_1048 - 23S rRNA 5-methyluridine methyltransferase 1039 43.42 0 1234926..1237196 + 756 114562227 - Sfri_1049 - (p)ppGpp synthetase I, SpoT/RelA 1040 41.97 0 1237288..1238109 + 273 114562228 mazG Sfri_1050 - nucleoside triphosphate pyrophosphohydrolase 1041 42.19 0 1238224..1239861 + 545 114562229 - Sfri_1051 - CTP synthetase 1042 43.78 0 1240136..1241437 + 433 114562230 eno Sfri_1052 - phosphopyruvate hydratase 1043 38.94 -1 1241538..1241840 + 100 114562231 - Sfri_1053 - septum formation initiator 1044 45.49 +1 1241903..1242601 + 232 114562232 - Sfri_1054 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1045 41.25 0 1242663..1243142 + 159 114562233 - Sfri_1055 - 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1046 42.36 0 1243170..1244243 + 357 114562234 - Sfri_1056 - pseudouridylate synthase 1047 42.40 0 1244247..1244996 + 249 114562235 - Sfri_1057 - stationary-phase survival protein SurE 1048 42.92 0 1244993..1245628 + 211 114562236 - Sfri_1058 - protein-L-isoaspartate O-methyltransferase 1049 42.26 0 1245732..1246661 + 309 114562237 - Sfri_1059 - peptidase M23B 1050 40.64 0 1246740..1247711 + 323 114562238 - Sfri_1060 - RNA polymerase, sigma 28 subunit 1051 43.19 0 1248096..1250681 - 861 114562239 - Sfri_1061 - DNA mismatch repair protein 1052 42.44 0 1250967..1252031 + 354 114562240 recA Sfri_1062 - recombinase A 1053 42.93 0 1252831..1255455 + 874 114562241 - Sfri_1063 - alanyl-tRNA synthetase 1054 40.91 0 1255913..1256110 + 65 114562242 - Sfri_1064 - carbon storage regulator, CsrA 1055 44.03 0 1258384..1258626 + 80 114562243 - Sfri_1065 - sodium pump decarboxylases, gamma subunit 1056 45.36 +1 1258640..1260418 + 592 114562244 - Sfri_1066 - pyruvate carboxylase subunit B 1057 43.59 0 1260428..1261558 + 376 114562245 - Sfri_1067 - sodium ion-translocating decarboxylase, beta subunit 1058 40.49 0 1261894..1263165 + 423 114562246 - Sfri_1068 - putative lipoprotein 1059 44.92 0 1263247..1264497 - 416 114562247 - Sfri_1069 - sodium:dicarboxylate symporter 1060 41.26 0 1265066..1265494 + 142 114562248 - Sfri_1070 - hypothetical protein 1061 43.43 0 1265573..1268404 + 943 114562249 - Sfri_1071 - peptidase M16 domain-containing protein 1062 42.22 0 1268748..1270367 + 539 114562250 - Sfri_1072 - glutamate--cysteine ligase 1063 42.99 0 1270370..1270804 + 144 114562251 - Sfri_1073 - hypothetical protein 1064 42.88 0 1270992..1271609 + 205 114562252 - Sfri_1074 - hypothetical protein 1065 45.89 +1 1271876..1272958 - 360 114562253 - Sfri_1075 - phosphoribosylaminoimidazole carboxylase ATPase subunit 1066 47.36 +1 1272958..1273449 - 163 114562254 - Sfri_1076 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 1067 43.83 0 1273755..1275593 + 612 114562255 - Sfri_1077 - von Willebrand factor, type A 1068 44.13 0 1275594..1276232 + 212 114562256 - Sfri_1078 - ECF subfamily RNA polymerase sigma-24 factor 1069 43.46 0 1276229..1277077 + 282 114562257 - Sfri_1079 - hypothetical protein 1070 46.12 +1 1277280..1280564 + 1094 114562258 - Sfri_1080 - peptidase S41 1071 41.32 0 1280681..1281118 - 145 114562259 - Sfri_1081 - OsmC family protein 1072 41.30 0 1281394..1281669 + 91 114562260 - Sfri_1082 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0