IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
900	 54.17	0	987632..988207	-	191	30062473	ycbP	S1001	-	NAD(P)H-dependent FMN reductase
901	 52.87	0	988345..989040	+	231	30062474	-	S1002	-	IS1 orfB, A
902	 52.98	0	989411..989914	-	167	30062475	-	S1004	-	IS1 orfB
903	 52.90	0	989833..990108	-	91	30062476	-	S1005	-	IS1 orfA
904	 47.83	0	990248..992848	+	866	30062477	ycbS	S1006	-	putative outer membrane protein
905	 48.37	0	992839..993822	+	327	30062478	-	S1007	-	fimbrial protein
906	 47.15	-1	993920..994462	+	180	30062479	-	S1008	-	putative fimbrial-like protein
907	 47.34	-1	994422..994985	+	187	30062480	-	S1009	-	putative fimbrial-like protein
908	 50.95	0	994951..995688	+	245	30062481	ycbF	S1010	-	hypotheical protein
909	 46.79	-1	995800..996810	+	336	30062482	pyrD	S1011	-	dihydroorotate dehydrogenase 2
910	 49.57	0	996948..997526	+	192	30062483	ycbW	S1012	-	hypothetical protein
911	 50.45	0	997523..998632	-	369	30062484	-	S1013	-	hypothetical protein
912	 53.96	0	998876..1000984	+	702	30062485	ycbY	S1014	-	23S rRNA m(2)G2445 methyltransferase
913	 52.15	0	1000996..1002903	+	635	30062486	uup	S1015	-	ABC transporter ATPase component
914	 52.23	0	1003033..1004286	+	417	30062487	pqiA	S1016	-	paraquat-inducible protein A
915	 50.03	0	1004291..1005931	+	546	30062488	pqiB	S1017	-	paraquat-inducible protein B
916	 52.13	0	1005928..1006491	+	187	30062489	ymbA	S1018	-	hypothetical protein
917	 54.76	0	1006747..1006914	+	55	30062490	rmf	S1019	-	ribosome modulation factor
918	 52.22	0	1006984..1007502	-	172	30062491	fabA	S1020	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
919	 51.79	0	1007571..1009331	-	586	30062492	-	S1021	-	putative ATP-dependent protease
920	 46.36	-1	1009516..1009968	+	150	30062493	ycbG	S1022	-	hypothetical protein
921	 53.20	0	1010044..1011090	-	348	30062494	ompA	S1023	-	outer membrane protein A
922	 47.65	0	1011446..1011955	-	169	30062495	sulA	S1024	-	SOS cell division inhibitor
923	 47.18	-1	1012174..1012599	+	141	30062496	-	S1025	-	hypothetical protein
924	 53.01	0	1012675..1013040	+	121	161486516	-	S1026	-	insertion sequence 2 OrfA protein
925	 56.40	+1	1013019..1013651	+	210	30062498	-	S1027	-	IS2 orfB
926	 51.99	0	1013611..1015776	-	721	30062499	-	S1028	-	hypothetical protein
927	 48.10	0	1015786..1016232	-	148	30062500	yccF	S1029	-	hypothetical protein
928	 52.94	0	1016355..1018409	+	684	30062501	helD	S1030	-	DNA helicase IV
929	 52.51	0	1018441..1018899	-	152	161486515	mgsA	S1031	-	methylglyoxal synthase
930	 50.68	0	1018995..1019657	-	220	30062503	-	S1032	-	hypothetical protein
931	 53.63	0	1019776..1020243	+	155	30062504	-	S1033	-	hypothetical protein
932	 53.93	0	1020288..1020656	-	122	30062505	yccV	S1034	-	hypothetical protein
933	 51.81	0	1020663..1021766	-	367	30062506	-	S1035	-	putative oxidoreductase
934	 51.97	0	1021948..1022226	+	92	30062507	-	S1036	-	hypothetical protein
935	 46.97	-1	1022223..1022552	-	109	161486514	yccK	S1037	-	sulfurtransferase TusE
936	 50.30	0	1022643..1023302	-	219	30062509	yccA	S1038	-	hypothetical protein
937	 55.23	0	1024022..1025140	+	372	30062510	hyaA	S1040	-	hydrogenase-1 small subunit
938	 56.13	+1	1025137..1026930	+	597	30062511	hyaB	S1041	-	hydrogenase 1 large subunit
939	 51.55	0	1026949..1027656	+	235	30062512	hyaC	S1042	-	hydrogenase 1 b-type cytochrome subunit
940	 59.01	+1	1027653..1028240	+	195	30062513	hyaD	S1043	-	hydrogenase 1 maturation protease
941	 56.89	+1	1028237..1028635	+	132	30062514	hyaE	S1044	-	hydrogenase-1 operon protein HyaE
942	 54.90	0	1028632..1029489	+	285	30062515	hyaF	S1045	-	hydrogenase-1 operon protein hyaF
943	 53.92	0	1029623..1031167	+	514	30062516	appC	S1046	-	third cytochrome oxidase, subunit I
944	 52.42	0	1031179..1032315	+	378	30062517	appB	S1047	-	third cytochrome oxidase, subunit II
945	 53.66	0	1032499..1033797	+	432	30062518	appA	S1048	-	phosphoanhydride phosphorylase
946	 51.90	0	1036098..1036544	-	148	161486513	etp	S1051	-	phosphotyrosine-protein phosphatase
947	 50.96	0	1036532..1037671	-	379	30062520	yccZ	S1052	-	exopolysaccharide export protein
948	 52.07	0	1037717..1039813	-	698	30062521	ymcA	S1053	-	hypothetical protein
949	 51.94	0	1039813..1040559	-	248	30062522	ymcB	S1054	-	hypothetical protein
950	 47.91	0	1040556..1041200	-	214	30062523	ymcC	S1055	-	putative regulator
951	 55.86	+1	1041307..1041630	-	107	30062524	ymcD	S1056	-	hypothetical protein
952	 47.89	0	1042054..1042266	-	70	30062525	cspH	S1057	-	cold shock-like protein
953	 52.90	0	1042621..1042896	+	91	30062526	-	S1058	-	IS1 orfA
954	 52.78	0	1042815..1043318	+	167	30062527	-	S1059	-	IS1 orfB
955	 45.77	-1	1043340..1043540	+	66	30062528	cspG	S1060	-	cold shock protein CspG
956	 41.99	-2	1043714..1043944	+	76	30062529	ymcE	S1061	-	cold shock gene
957	 49.07	0	1044156..1045229	-	357	30062530	yccM	S1062	-	hypothetical protein
958	 53.35	0	1048125..1049153	+	342	30062531	torT	S1064	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
959	 52.67	0	1049126..1049818	-	230	30062532	torR	S1065	-	DNA-binding transcriptional regulator TorR
960	 51.66	0	1049905..1051077	+	390	30062533	torC	S1066	-	trimethylamine N-oxide reductase, cytochrome c-type subunit
961	 52.78	0	1053820..1054323	-	167	30062534	-	S1069	-	IS1 orfB
962	 52.90	0	1054242..1054517	-	91	30062535	-	S1070	-	IS1 orfA
963	 53.92	0	1055083..1055388	-	101	30062536	yccD	S1072	-	chaperone-modulator protein CbpM
964	 52.77	0	1055388..1056308	-	306	30062537	cbpA	S1073	-	curved DNA-binding protein CbpA
965	 33.57	-2	1056569..1057825	+	418	30062538	yccE	S1074	-	hypothetical protein
966	 51.61	0	1058118..1059359	+	413	30062539	agp	S1075	-	glucose-1-phosphatase/inositol phosphatase
967	 46.49	-1	1059397..1059624	-	75	30062540	yccJ	S1076	-	hypothetical protein
968	 54.27	0	1059645..1060241	-	198	30062541	wrbA	S1077	-	TrpR binding protein WrbA
969	 48.48	0	1060451..1060681	+	76	30062542	ycdF	S1078	-	hypothetical protein
970	 54.12	0	1060803..1062197	-	464	30062543	ycdG	S1079	-	putative transport protein
971	 60.35	+2	1062152..1062610	-	152	30062544	-	S1080	-	hypothetical protein
972	 56.18	+1	1062657..1063247	-	196	30062545	-	S1081	-	hypothetical protein
973	 57.68	+1	1063257..1064057	-	266	30062546	-	S1082	-	putative acetyltransferase
974	 53.75	0	1064065..1064451	-	128	30062547	-	S1083	-	hypothetical protein
975	 55.78	+1	1064463..1065197	-	244	30062548	-	S1084	-	putative synthetase
976	 54.57	0	1065155..1066303	-	382	30062549	-	S1085	-	hypothetical protein
977	 51.17	0	1066534..1067172	+	212	30062550	ycdC	S1086	-	putative tet operon regulator
978	 54.29	0	1067466..1068653	-	395	30062551	-	S1087	-	IS91
979	 51.44	0	1068670..1069017	-	115	30062552	-	S1088	-	IS91
980	 55.65	+1	1069073..1069780	+	235	30062553	-	S1089	-	putative cytochrome
981	 51.51	0	1069838..1070965	+	375	30062554	ycdO	S1090	-	hypothetical protein
982	 53.87	0	1070971..1072236	+	421	30062555	ycdB	S1091	-	hypothetical protein
983	 55.25	0	1073741..1074607	-	288	30062556	-	S1093	-	IS3 orfB
984	 50.33	0	1074604..1074903	-	99	30062557	-	S1094	-	IS3 orfA
985	 40.83	-2	1075495..1076481	+	328	30062558	ycdU	S1096	-	hypothetical protein
986	 48.10	0	1077989..1078726	+	245	30062559	ycdX	S1101	-	putative hydrolase
987	 53.69	0	1078750..1079304	+	184	30062560	ycdY	S1102	-	putative oxidoreductase component
988	 54.21	0	1079376..1079897	+	173	30062561	ycdZ	S1103	-	hypothetical protein
989	 41.97	-2	1080763..1081179	-	138	30062562	csgF	S1105	-	curli assembly protein CsgF
990	 42.82	-2	1081204..1081593	-	129	30062563	csgE	S1106	-	curli assembly protein CsgE
991	 41.47	-2	1081598..1082248	-	216	30062564	csgD	S1107	-	DNA-binding transcriptional regulator CsgD
992	 42.11	-2	1083002..1083457	+	151	30062565	csgB	S1108	-	curlin minor subunit
993	 46.20	-1	1083671..1083973	+	100	30062566	-	S1110	-	IS600
994	 52.90	0	1084114..1084752	+	212	30062567	-	S1111	-	IS600 ORF2
995	 42.94	-2	1085157..1085489	+	110	30062568	csgC	S1113	-	putative autoagglutination protein
996	 44.23	-1	1085610..1085921	+	103	30062569	-	S1114	-	hypothetical protein
997	 51.69	0	1086016..1086549	+	177	30062570	-	S1115	-	hypothetical protein
998	 50.54	0	1086491..1087972	+	493	30062571	ymdC	S1116	-	putative synthase
999	 43.70	-1	1087980..1089137	-	385	30062572	mdoC	S1117	-	glucans biosynthesis protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.