version 1.0
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 899 52.50 0 986680..987639 - 319 161486517 ycbO S1000 - alkanesulfonate transporter substrate-binding subunit 900 54.17 0 987632..988207 - 191 30062473 ycbP S1001 - NAD(P)H-dependent FMN reductase 901 52.87 0 988345..989040 + 231 30062474 - S1002 - IS1 orfB, A 902 52.98 0 989411..989914 - 167 30062475 - S1004 - IS1 orfB 903 52.90 0 989833..990108 - 91 30062476 - S1005 - IS1 orfA 904 47.83 0 990248..992848 + 866 30062477 ycbS S1006 - putative outer membrane protein 905 48.37 0 992839..993822 + 327 30062478 - S1007 - fimbrial protein 906 47.15 -1 993920..994462 + 180 30062479 - S1008 - putative fimbrial-like protein 907 47.34 -1 994422..994985 + 187 30062480 - S1009 - putative fimbrial-like protein 908 50.95 0 994951..995688 + 245 30062481 ycbF S1010 - hypotheical protein 909 46.79 -1 995800..996810 + 336 30062482 pyrD S1011 - dihydroorotate dehydrogenase 2 910 49.57 0 996948..997526 + 192 30062483 ycbW S1012 - hypothetical protein 911 50.45 0 997523..998632 - 369 30062484 - S1013 - hypothetical protein 912 53.96 0 998876..1000984 + 702 30062485 ycbY S1014 - 23S rRNA m(2)G2445 methyltransferase 913 52.15 0 1000996..1002903 + 635 30062486 uup S1015 - ABC transporter ATPase component 914 52.23 0 1003033..1004286 + 417 30062487 pqiA S1016 - paraquat-inducible protein A 915 50.03 0 1004291..1005931 + 546 30062488 pqiB S1017 - paraquat-inducible protein B 916 52.13 0 1005928..1006491 + 187 30062489 ymbA S1018 - hypothetical protein 917 54.76 0 1006747..1006914 + 55 30062490 rmf S1019 - ribosome modulation factor 918 52.22 0 1006984..1007502 - 172 30062491 fabA S1020 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 919 51.79 0 1007571..1009331 - 586 30062492 - S1021 - putative ATP-dependent protease 920 46.36 -1 1009516..1009968 + 150 30062493 ycbG S1022 - hypothetical protein 921 53.20 0 1010044..1011090 - 348 30062494 ompA S1023 - outer membrane protein A 922 47.65 0 1011446..1011955 - 169 30062495 sulA S1024 - SOS cell division inhibitor 923 47.18 -1 1012174..1012599 + 141 30062496 - S1025 - hypothetical protein 924 53.01 0 1012675..1013040 + 121 161486516 - S1026 - insertion sequence 2 OrfA protein 925 56.40 +1 1013019..1013651 + 210 30062498 - S1027 - IS2 orfB 926 51.99 0 1013611..1015776 - 721 30062499 - S1028 - hypothetical protein 927 48.10 0 1015786..1016232 - 148 30062500 yccF S1029 - hypothetical protein 928 52.94 0 1016355..1018409 + 684 30062501 helD S1030 - DNA helicase IV 929 52.51 0 1018441..1018899 - 152 161486515 mgsA S1031 - methylglyoxal synthase 930 50.68 0 1018995..1019657 - 220 30062503 - S1032 - hypothetical protein 931 53.63 0 1019776..1020243 + 155 30062504 - S1033 - hypothetical protein 932 53.93 0 1020288..1020656 - 122 30062505 yccV S1034 - hypothetical protein 933 51.81 0 1020663..1021766 - 367 30062506 - S1035 - putative oxidoreductase 934 51.97 0 1021948..1022226 + 92 30062507 - S1036 - hypothetical protein 935 46.97 -1 1022223..1022552 - 109 161486514 yccK S1037 - sulfurtransferase TusE 936 50.30 0 1022643..1023302 - 219 30062509 yccA S1038 - hypothetical protein 937 55.23 0 1024022..1025140 + 372 30062510 hyaA S1040 - hydrogenase-1 small subunit 938 56.13 +1 1025137..1026930 + 597 30062511 hyaB S1041 - hydrogenase 1 large subunit 939 51.55 0 1026949..1027656 + 235 30062512 hyaC S1042 - hydrogenase 1 b-type cytochrome subunit 940 59.01 +1 1027653..1028240 + 195 30062513 hyaD S1043 - hydrogenase 1 maturation protease 941 56.89 +1 1028237..1028635 + 132 30062514 hyaE S1044 - hydrogenase-1 operon protein HyaE 942 54.90 0 1028632..1029489 + 285 30062515 hyaF S1045 - hydrogenase-1 operon protein hyaF 943 53.92 0 1029623..1031167 + 514 30062516 appC S1046 - third cytochrome oxidase, subunit I 944 52.42 0 1031179..1032315 + 378 30062517 appB S1047 - third cytochrome oxidase, subunit II 945 53.66 0 1032499..1033797 + 432 30062518 appA S1048 - phosphoanhydride phosphorylase 946 51.90 0 1036098..1036544 - 148 161486513 etp S1051 - phosphotyrosine-protein phosphatase 947 50.96 0 1036532..1037671 - 379 30062520 yccZ S1052 - exopolysaccharide export protein 948 52.07 0 1037717..1039813 - 698 30062521 ymcA S1053 - hypothetical protein 949 51.94 0 1039813..1040559 - 248 30062522 ymcB S1054 - hypothetical protein 950 47.91 0 1040556..1041200 - 214 30062523 ymcC S1055 - putative regulator 951 55.86 +1 1041307..1041630 - 107 30062524 ymcD S1056 - hypothetical protein 952 47.89 0 1042054..1042266 - 70 30062525 cspH S1057 - cold shock-like protein 953 52.90 0 1042621..1042896 + 91 30062526 - S1058 - IS1 orfA 954 52.78 0 1042815..1043318 + 167 30062527 - S1059 - IS1 orfB 955 45.77 -1 1043340..1043540 + 66 30062528 cspG S1060 - cold shock protein CspG 956 41.99 -2 1043714..1043944 + 76 30062529 ymcE S1061 - cold shock gene 957 49.07 0 1044156..1045229 - 357 30062530 yccM S1062 - hypothetical protein 958 53.35 0 1048125..1049153 + 342 30062531 torT S1064 - periplasmic sensory protein associated with the TorRS two-component regulatory system 959 52.67 0 1049126..1049818 - 230 30062532 torR S1065 - DNA-binding transcriptional regulator TorR 960 51.66 0 1049905..1051077 + 390 30062533 torC S1066 - trimethylamine N-oxide reductase, cytochrome c-type subunit 961 52.78 0 1053820..1054323 - 167 30062534 - S1069 - IS1 orfB 962 52.90 0 1054242..1054517 - 91 30062535 - S1070 - IS1 orfA 963 53.92 0 1055083..1055388 - 101 30062536 yccD S1072 - chaperone-modulator protein CbpM 964 52.77 0 1055388..1056308 - 306 30062537 cbpA S1073 - curved DNA-binding protein CbpA 965 33.57 -2 1056569..1057825 + 418 30062538 yccE S1074 - hypothetical protein 966 51.61 0 1058118..1059359 + 413 30062539 agp S1075 - glucose-1-phosphatase/inositol phosphatase 967 46.49 -1 1059397..1059624 - 75 30062540 yccJ S1076 - hypothetical protein 968 54.27 0 1059645..1060241 - 198 30062541 wrbA S1077 - TrpR binding protein WrbA 969 48.48 0 1060451..1060681 + 76 30062542 ycdF S1078 - hypothetical protein 970 54.12 0 1060803..1062197 - 464 30062543 ycdG S1079 - putative transport protein 971 60.35 +2 1062152..1062610 - 152 30062544 - S1080 - hypothetical protein 972 56.18 +1 1062657..1063247 - 196 30062545 - S1081 - hypothetical protein 973 57.68 +1 1063257..1064057 - 266 30062546 - S1082 - putative acetyltransferase 974 53.75 0 1064065..1064451 - 128 30062547 - S1083 - hypothetical protein 975 55.78 +1 1064463..1065197 - 244 30062548 - S1084 - putative synthetase 976 54.57 0 1065155..1066303 - 382 30062549 - S1085 - hypothetical protein 977 51.17 0 1066534..1067172 + 212 30062550 ycdC S1086 - putative tet operon regulator 978 54.29 0 1067466..1068653 - 395 30062551 - S1087 - IS91 979 51.44 0 1068670..1069017 - 115 30062552 - S1088 - IS91 980 55.65 +1 1069073..1069780 + 235 30062553 - S1089 - putative cytochrome 981 51.51 0 1069838..1070965 + 375 30062554 ycdO S1090 - hypothetical protein 982 53.87 0 1070971..1072236 + 421 30062555 ycdB S1091 - hypothetical protein 983 55.25 0 1073741..1074607 - 288 30062556 - S1093 - IS3 orfB 984 50.33 0 1074604..1074903 - 99 30062557 - S1094 - IS3 orfA 985 40.83 -2 1075495..1076481 + 328 30062558 ycdU S1096 - hypothetical protein 986 48.10 0 1077989..1078726 + 245 30062559 ycdX S1101 - putative hydrolase 987 53.69 0 1078750..1079304 + 184 30062560 ycdY S1102 - putative oxidoreductase component 988 54.21 0 1079376..1079897 + 173 30062561 ycdZ S1103 - hypothetical protein 989 41.97 -2 1080763..1081179 - 138 30062562 csgF S1105 - curli assembly protein CsgF 990 42.82 -2 1081204..1081593 - 129 30062563 csgE S1106 - curli assembly protein CsgE 991 41.47 -2 1081598..1082248 - 216 30062564 csgD S1107 - DNA-binding transcriptional regulator CsgD 992 42.11 -2 1083002..1083457 + 151 30062565 csgB S1108 - curlin minor subunit 993 46.20 -1 1083671..1083973 + 100 30062566 - S1110 - IS600 994 52.90 0 1084114..1084752 + 212 30062567 - S1111 - IS600 ORF2 995 42.94 -2 1085157..1085489 + 110 30062568 csgC S1113 - putative autoagglutination protein 996 44.23 -1 1085610..1085921 + 103 30062569 - S1114 - hypothetical protein 997 51.69 0 1086016..1086549 + 177 30062570 - S1115 - hypothetical protein 998 50.54 0 1086491..1087972 + 493 30062571 ymdC S1116 - putative synthase 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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