IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
30	 45.96	-1	33216..33611	+	131	161486554	caiF	S0033	-	DNA-binding transcriptional activator CaiF
31	 54.41	0	33697..34308	-	203	30061603	caiE	S0034	-	carnitine operon protein CaiE
32	 52.35	0	34293..35186	-	297	30061604	caiD	S0035	-	carnitinyl-CoA dehydratase
33	 50.73	0	35187..36755	-	522	30061605	caiC	S0036	-	putative crotonobetaine/carnitine-CoA ligase
34	 52.46	0	36814..38031	-	405	30061606	caiB	S0037	-	crotonobetainyl-CoA:carnitine CoA-transferase
35	 53.89	0	38160..39302	-	380	30061607	caiA	S0038	-	crotonobetainyl-CoA dehydrogenase
36	 52.21	0	39333..40847	-	504	30061608	caiT	S0039	-	L-carnitine/gamma-butyrobetaine antiporter
37	 52.66	0	41203..41973	+	256	161486553	fixA	S0040	-	putative electron transfer flavoprotein FixA
38	 55.17	0	42980..44266	+	428	30061610	fixC	S0042	-	putative oxidoreductase FixC
39	 56.60	+1	44263..44550	+	95	30061611	fixX	S0043	-	putative ferredoxin
40	 52.26	0	44609..46003	+	464	30061612	yaaU	S0044	-	putative transport protein
41	 55.37	0	46051..46581	+	176	30061613	yabF	S0045	-	glutathione-regulated potassium-efflux system ancillary protein KefF
42	 55.29	0	46574..48436	+	620	30061614	kefC	S0046	-	glutathione-regulated potassium-efflux system protein KefC
43	 52.92	0	48627..49106	+	159	30061615	folA	S0047	-	dihydrofolate reductase
44	 55.99	+1	49184..50026	-	280	30061616	apaH	S0048	-	diadenosine tetraphosphatase
45	 51.85	0	50033..50410	-	125	30061617	apaG	S0049	-	ApaG
46	 53.41	0	50413..51234	-	273	30061618	ksgA	S0050	-	dimethyladenosine transferase
47	 56.26	+1	51231..52220	-	329	30061619	pdxA	S0051	-	4-hydroxythreonine-4-phosphate dehydrogenase
48	 53.85	0	52220..53506	-	428	30061620	surA	S0052	-	peptidyl-prolyl cis-trans isomerase SurA
49	 51.38	0	53559..55913	-	784	30061621	imp	S0053	-	organic solvent tolerance protein
50	 52.94	0	56168..56983	+	271	30061622	djlA	S0054	-	DNA-J like membrane chaperone protein
51	 54.24	0	57100..57759	-	219	30061623	yabO	S0055	-	23S rRNA/tRNA pseudouridine synthase A
52	 54.87	0	57771..60677	-	968	30061624	hepA	S0056	-	ATP-dependent helicase HepA
53	 55.19	0	60842..63193	-	783	30061625	polB	S0057	-	DNA polymerase II
54	 55.17	0	63268..63963	-	231	30061626	araD	S0058	-	L-ribulose-5-phosphate 4-epimerase
55	 55.29	0	64163..65665	-	500	30061627	araA	S0059	-	L-arabinose isomerase
56	 58.08	+1	65676..67376	-	566	30061628	araB	S0060	-	ribulokinase
57	 52.67	0	67715..68593	+	292	30061629	araC	S0061	-	DNA-binding transcriptional regulator AraC
58	 54.51	0	68679..69443	+	254	30061630	yabI	S0062	-	hypothetical protein
59	 56.94	+1	69557..70255	-	232	30061631	thiQ	S0063	-	thiamine transporter ATP-binding subunit
60	 58.54	+1	70239..71849	-	536	30061632	thiP	S0064	-	thiamine transporter membrane protein
61	 52.74	0	71825..72808	-	327	30061633	tbpA	S0065	-	thiamine transporter substrate binding subunit
62	 55.19	0	72972..74627	-	551	30061634	yabN	S0066	-	transcriptional regulator SgrR
63	 48.09	0	74949..76127	+	392	30061635	yabM	S0067	-	putative transport protein
64	 52.15	0	76176..76781	-	201	30061636	leuD	S0068	-	isopropylmalate isomerase small subunit
65	 55.32	0	76792..78192	-	466	30061637	leuC	S0069	-	isopropylmalate isomerase large subunit
66	 55.22	0	78195..79286	-	363	161486552	leuB	S0070	-	3-isopropylmalate dehydrogenase
67	 52.74	0	79286..80857	-	523	30061639	leuA	S0071	-	2-isopropylmalate synthase
68	 47.13	-1	80950..81036	-	28	30061640	leuL	S0072	-	leu operon leader peptide
69	 45.71	-1	81695..82639	+	314	161486551	leuO	S0073	-	leucine transcriptional activator
70	 52.81	0	82957..84681	+	574	161486550	ilvI	S0074	-	acetolactate synthase 3 catalytic subunit
71	 50.20	0	84684..85175	+	163	30061643	ilvH	S0075	-	acetolactate synthase 3 regulatory subunit
72	 47.13	-1	85188..85274	+	28	30061644	fruL	S0076	-	fruR leader peptide
73	 54.93	0	85356..86360	+	334	30061645	fruR	S0077	-	DNA-binding transcriptional regulator FruR
74	 52.54	0	86483..86758	+	91	30061646	-	S0078	-	IS1 orfA
75	 52.58	0	86677..87180	+	167	30061647	-	S0079	-	IS1 orfB
76	 52.07	0	87739..88197	+	152	30061648	yabB	S0080	-	cell division protein MraZ
77	 55.20	0	88199..89140	+	313	30061649	mraW	S0081	-	S-adenosyl-methyltransferase MraW
78	 50.55	0	89137..89502	+	121	30061650	ftsL	S0082	-	cell division protein FtsL
79	 53.88	0	89518..91284	+	588	30061651	ftsI	S0083	-	penicillin-binding protein 3; peptidoglycan synthetase
80	 56.79	+1	91271..92758	+	495	30061652	murE	S0084	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
81	 54.82	0	92755..94113	+	452	30061653	murF	S0085	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
82	 52.82	0	94107..95189	+	360	30061654	mraY	S0086	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
83	 55.35	0	95192..96508	+	438	30061655	murD	S0087	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
84	 52.53	0	96508..97752	+	414	30061656	ftsW	S0088	-	cell division protein FtsW
85	 55.71	+1	97749..98816	+	355	30061657	murG	S0089	-	N-acetylglucosaminyl transferase
86	 54.40	0	98870..100345	+	491	30061658	murC	S0090	-	UDP-N-acetylmuramate--L-alanine ligase
87	 51.36	0	100338..101258	+	306	30061659	ddl	S0091	-	D-alanine--D-alanine ligase
88	 53.31	0	101260..102090	+	276	30061660	ftsQ	S0092	-	cell division protein FtsQ
89	 52.02	0	102087..103349	+	420	30061661	ftsA	S0093	-	cell division protein FtsA
90	 53.91	0	103410..104561	+	383	30061662	ftsZ	S0094	-	cell division protein FtsZ
91	 51.20	0	104662..105579	+	305	30061663	lpxC	S0095	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
92	 54.00	0	105810..106322	+	170	161486549	yacA	S0096	-	SecA regulator SecM
93	 52.22	0	106384..109089	+	901	30061665	secA	S0097	-	preprotein translocase subunit SecA
94	 49.23	0	109149..109538	+	129	30061666	mutT	S0098	-	nucleoside triphosphate pyrophosphohydrolase
95	 54.81	0	109553..109687	-	44	30061667	-	S0099	-	hypothetical protein
96	 52.02	0	109638..109835	-	65	30061668	yacG	S0100	-	zinc-binding protein
97	 51.21	0	109845..110588	-	247	30061669	yacF	S0101	-	hypothetical protein
98	 52.33	0	110588..111208	-	206	30061670	coaE	S0102	-	dephospho-CoA kinase
99	 51.72	0	111433..112476	+	347	30061671	guaC	S0103	-	guanosine 5'-monophosphate oxidoreductase
100	 51.85	0	112396..112503	-	35	30061672	-	S0104	-	hypothetical protein
101	 52.54	0	112511..113713	-	400	30061673	hofC	S0105	-	type IV pilin biogenesis protein
102	 53.06	0	114860..115300	-	146	30061674	ppdD	S0107	-	putative major pilin subunit
103	 53.36	0	115503..116396	-	297	30061675	nadC	S0108	-	quinolinate phosphoribosyltransferase
104	 53.80	0	116484..117035	+	183	30061676	ampD	S0109	-	N-acetyl-anhydromuranmyl-L-alanine amidase
105	 52.16	0	117032..117886	+	284	30061677	ampE	S0110	-	regulatory protein AmpE
106	 52.69	0	117929..119302	-	457	30061678	aroP	S0111	-	aromatic amino acid transporter
107	 55.82	+1	119843..120607	+	254	30061679	pdhR	S0112	-	transcriptional regulator PdhR
108	 53.23	0	120768..123431	+	887	30061680	aceE	S0113	-	pyruvate dehydrogenase subunit E1
109	 54.55	0	123446..125326	+	626	30061681	aceF	S0114	-	dihydrolipoamide acetyltransferase
110	 52.70	0	125651..127075	+	474	30061682	lpdA	S0115	-	dihydrolipoamide dehydrogenase
111	 55.77	+1	129353..131950	+	865	30061683	acnB	S0117	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
112	 52.07	0	132125..132487	+	120	161486548	yacL	S0118	-	hypothetical protein
113	 45.91	-1	132525..133319	-	264	30061685	speD	S0119	-	S-adenosylmethionine decarboxylase
114	 50.98	0	133335..134201	-	288	30061686	speE	S0120	-	spermidine synthase
115	 49.04	0	134307..134777	-	156	30061687	yacC	S0121	-	hypothetical protein
116	 54.55	0	134820..136370	+	516	30061688	yacK	S0122	-	multicopper oxidase
117	 55.71	+1	136417..138807	-	796	30061689	gcd	S0123	-	glucose dehydrogenase
118	 50.28	0	139013..139549	+	178	161486547	hpt	S0124	-	hypoxanthine-guanine phosphoribosyltransferase
119	 50.83	0	139590..140252	-	220	30061691	yadF	S0125	-	carbonic anhydrase
120	 48.87	0	140361..141287	+	308	30061692	yadG	S0126	-	putative ATP-binding component of a transport system
121	 50.97	0	141284..142054	+	256	30061693	yadH	S0127	-	hypothetical protein
122	 48.75	0	142159..142599	+	146	30061694	yadI	S0128	-	putative PTS enzyme II B component
123	 49.11	0	142663..143892	+	409	30061695	yadE	S0129	-	hypothetical protein
124	 52.76	0	143896..144276	-	126	30061696	panD	S0130	-	aspartate alpha-decarboxylase
125	 48.62	0	144550..145452	+	300	30061697	yadD	S0131	-	hypothetical protein
126	 52.23	0	145526..146377	-	283	30061698	panC	S0132	-	pantoate--beta-alanine ligase
127	 53.84	0	146389..147183	-	264	30061699	panB	S0133	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
128	 52.54	0	147677..147952	+	91	30061700	-	S0134	-	IS1 orfA
129	 52.78	0	147871..148374	+	167	30061701	-	S0136	-	IS1 orfB
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.