IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
6	 49.55	0	5682..6458	-	258	30061577	yaaA	S0006	-	hypothetical protein
7	 51.78	0	8237..9190	+	317	30061578	talB	S0008	-	transaldolase B
8	 54.08	0	9305..9892	+	195	30061579	mogA	S0009	-	molybdenum cofactor biosynthesis protein
9	 53.26	0	9927..10493	-	188	30061580	yaaH	S0010	-	hypothetical protein
10	 50.56	0	10642..11355	-	237	30061581	-	S0012	-	hypothetical protein
11	 48.40	0	11381..11785	-	134	30061583	yaaI	S0013	-	hypothetical protein
12	 51.17	0	12162..14078	+	638	30061584	dnaK	S0014	-	molecular chaperone DnaK
13	 55.08	0	14167..15297	+	376	30061585	dnaJ	S0015	-	chaperone protein DnaJ
14	 51.43	0	15401..15610	-	69	30061586	gef	S0017	-	membrane toxin
15	 51.24	0	16139..17305	+	388	30061587	nhaA	S0018	-	pH-dependent sodium/proton antiporter
16	 47.44	-1	17371..18270	+	299	30061588	nhaR	S0019	-	transcriptional activator NhaR
17	 52.98	0	18683..19186	-	167	30061589	-	S0020	-	IS1 orfB
18	 52.54	0	19105..19380	-	91	30061590	-	S0021	-	IS1 orfA
19	 46.59	-1	19769..20032	-	87	161486555	rpsT	S0022	-	30S ribosomal protein S20
20	 48.40	0	20135..20353	+	72	30061592	-	S0023	-	hypothetical protein
21	 52.97	0	20361..21302	+	313	30061593	ribF	S0024	-	bifunctional riboflavin kinase/FMN adenylyltransferase
22	 55.66	+1	21345..24161	+	938	30061594	ileS	S0025	-	isoleucyl-tRNA synthetase
23	 53.74	0	24161..24655	+	164	30061595	lspA	S0026	-	lipoprotein signal peptidase
24	 54.89	0	24742..25191	+	149	30061596	slpA	S0027	-	FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase)
25	 55.10	0	25193..26143	+	316	30061597	ispH	S0028	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
26	 55.74	+1	26209..27123	+	304	30061598	yaaF	S0029	-	ribonucleoside hydrolase RihC
27	 53.04	0	27290..28111	+	273	30061599	dapB	S0030	-	dihydrodipicolinate reductase
28	 53.44	0	28567..29715	+	382	30061600	carA	S0031	-	carbamoyl phosphate synthase small subunit
29	 55.71	+1	29733..32954	+	1073	30061601	carB	S0032	-	carbamoyl phosphate synthase large subunit
30	 45.96	-1	33216..33611	+	131	161486554	caiF	S0033	-	DNA-binding transcriptional activator CaiF
31	 54.41	0	33697..34308	-	203	30061603	caiE	S0034	-	carnitine operon protein CaiE
32	 52.35	0	34293..35186	-	297	30061604	caiD	S0035	-	carnitinyl-CoA dehydratase
33	 50.73	0	35187..36755	-	522	30061605	caiC	S0036	-	putative crotonobetaine/carnitine-CoA ligase
34	 52.46	0	36814..38031	-	405	30061606	caiB	S0037	-	crotonobetainyl-CoA:carnitine CoA-transferase
35	 53.89	0	38160..39302	-	380	30061607	caiA	S0038	-	crotonobetainyl-CoA dehydrogenase
36	 52.21	0	39333..40847	-	504	30061608	caiT	S0039	-	L-carnitine/gamma-butyrobetaine antiporter
37	 52.66	0	41203..41973	+	256	161486553	fixA	S0040	-	putative electron transfer flavoprotein FixA
38	 55.17	0	42980..44266	+	428	30061610	fixC	S0042	-	putative oxidoreductase FixC
39	 56.60	+1	44263..44550	+	95	30061611	fixX	S0043	-	putative ferredoxin
40	 52.26	0	44609..46003	+	464	30061612	yaaU	S0044	-	putative transport protein
41	 55.37	0	46051..46581	+	176	30061613	yabF	S0045	-	glutathione-regulated potassium-efflux system ancillary protein KefF
42	 55.29	0	46574..48436	+	620	30061614	kefC	S0046	-	glutathione-regulated potassium-efflux system protein KefC
43	 52.92	0	48627..49106	+	159	30061615	folA	S0047	-	dihydrofolate reductase
44	 55.99	+1	49184..50026	-	280	30061616	apaH	S0048	-	diadenosine tetraphosphatase
45	 51.85	0	50033..50410	-	125	30061617	apaG	S0049	-	ApaG
46	 53.41	0	50413..51234	-	273	30061618	ksgA	S0050	-	dimethyladenosine transferase
47	 56.26	+1	51231..52220	-	329	30061619	pdxA	S0051	-	4-hydroxythreonine-4-phosphate dehydrogenase
48	 53.85	0	52220..53506	-	428	30061620	surA	S0052	-	peptidyl-prolyl cis-trans isomerase SurA
49	 51.38	0	53559..55913	-	784	30061621	imp	S0053	-	organic solvent tolerance protein
50	 52.94	0	56168..56983	+	271	30061622	djlA	S0054	-	DNA-J like membrane chaperone protein
51	 54.24	0	57100..57759	-	219	30061623	yabO	S0055	-	23S rRNA/tRNA pseudouridine synthase A
52	 54.87	0	57771..60677	-	968	30061624	hepA	S0056	-	ATP-dependent helicase HepA
53	 55.19	0	60842..63193	-	783	30061625	polB	S0057	-	DNA polymerase II
54	 55.17	0	63268..63963	-	231	30061626	araD	S0058	-	L-ribulose-5-phosphate 4-epimerase
55	 55.29	0	64163..65665	-	500	30061627	araA	S0059	-	L-arabinose isomerase
56	 58.08	+1	65676..67376	-	566	30061628	araB	S0060	-	ribulokinase
57	 52.67	0	67715..68593	+	292	30061629	araC	S0061	-	DNA-binding transcriptional regulator AraC
58	 54.51	0	68679..69443	+	254	30061630	yabI	S0062	-	hypothetical protein
59	 56.94	+1	69557..70255	-	232	30061631	thiQ	S0063	-	thiamine transporter ATP-binding subunit
60	 58.54	+1	70239..71849	-	536	30061632	thiP	S0064	-	thiamine transporter membrane protein
61	 52.74	0	71825..72808	-	327	30061633	tbpA	S0065	-	thiamine transporter substrate binding subunit
62	 55.19	0	72972..74627	-	551	30061634	yabN	S0066	-	transcriptional regulator SgrR
63	 48.09	0	74949..76127	+	392	30061635	yabM	S0067	-	putative transport protein
64	 52.15	0	76176..76781	-	201	30061636	leuD	S0068	-	isopropylmalate isomerase small subunit
65	 55.32	0	76792..78192	-	466	30061637	leuC	S0069	-	isopropylmalate isomerase large subunit
66	 55.22	0	78195..79286	-	363	161486552	leuB	S0070	-	3-isopropylmalate dehydrogenase
67	 52.74	0	79286..80857	-	523	30061639	leuA	S0071	-	2-isopropylmalate synthase
68	 47.13	-1	80950..81036	-	28	30061640	leuL	S0072	-	leu operon leader peptide
69	 45.71	-1	81695..82639	+	314	161486551	leuO	S0073	-	leucine transcriptional activator
70	 52.81	0	82957..84681	+	574	161486550	ilvI	S0074	-	acetolactate synthase 3 catalytic subunit
71	 50.20	0	84684..85175	+	163	30061643	ilvH	S0075	-	acetolactate synthase 3 regulatory subunit
72	 47.13	-1	85188..85274	+	28	30061644	fruL	S0076	-	fruR leader peptide
73	 54.93	0	85356..86360	+	334	30061645	fruR	S0077	-	DNA-binding transcriptional regulator FruR
74	 52.54	0	86483..86758	+	91	30061646	-	S0078	-	IS1 orfA
75	 52.58	0	86677..87180	+	167	30061647	-	S0079	-	IS1 orfB
76	 52.07	0	87739..88197	+	152	30061648	yabB	S0080	-	cell division protein MraZ
77	 55.20	0	88199..89140	+	313	30061649	mraW	S0081	-	S-adenosyl-methyltransferase MraW
78	 50.55	0	89137..89502	+	121	30061650	ftsL	S0082	-	cell division protein FtsL
79	 53.88	0	89518..91284	+	588	30061651	ftsI	S0083	-	penicillin-binding protein 3; peptidoglycan synthetase
80	 56.79	+1	91271..92758	+	495	30061652	murE	S0084	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
81	 54.82	0	92755..94113	+	452	30061653	murF	S0085	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
82	 52.82	0	94107..95189	+	360	30061654	mraY	S0086	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
83	 55.35	0	95192..96508	+	438	30061655	murD	S0087	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
84	 52.53	0	96508..97752	+	414	30061656	ftsW	S0088	-	cell division protein FtsW
85	 55.71	+1	97749..98816	+	355	30061657	murG	S0089	-	N-acetylglucosaminyl transferase
86	 54.40	0	98870..100345	+	491	30061658	murC	S0090	-	UDP-N-acetylmuramate--L-alanine ligase
87	 51.36	0	100338..101258	+	306	30061659	ddl	S0091	-	D-alanine--D-alanine ligase
88	 53.31	0	101260..102090	+	276	30061660	ftsQ	S0092	-	cell division protein FtsQ
89	 52.02	0	102087..103349	+	420	30061661	ftsA	S0093	-	cell division protein FtsA
90	 53.91	0	103410..104561	+	383	30061662	ftsZ	S0094	-	cell division protein FtsZ
91	 51.20	0	104662..105579	+	305	30061663	lpxC	S0095	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
92	 54.00	0	105810..106322	+	170	161486549	yacA	S0096	-	SecA regulator SecM
93	 52.22	0	106384..109089	+	901	30061665	secA	S0097	-	preprotein translocase subunit SecA
94	 49.23	0	109149..109538	+	129	30061666	mutT	S0098	-	nucleoside triphosphate pyrophosphohydrolase
95	 54.81	0	109553..109687	-	44	30061667	-	S0099	-	hypothetical protein
96	 52.02	0	109638..109835	-	65	30061668	yacG	S0100	-	zinc-binding protein
97	 51.21	0	109845..110588	-	247	30061669	yacF	S0101	-	hypothetical protein
98	 52.33	0	110588..111208	-	206	30061670	coaE	S0102	-	dephospho-CoA kinase
99	 51.72	0	111433..112476	+	347	30061671	guaC	S0103	-	guanosine 5'-monophosphate oxidoreductase
100	 51.85	0	112396..112503	-	35	30061672	-	S0104	-	hypothetical protein
101	 52.54	0	112511..113713	-	400	30061673	hofC	S0105	-	type IV pilin biogenesis protein
102	 53.06	0	114860..115300	-	146	30061674	ppdD	S0107	-	putative major pilin subunit
103	 53.36	0	115503..116396	-	297	30061675	nadC	S0108	-	quinolinate phosphoribosyltransferase
104	 53.80	0	116484..117035	+	183	30061676	ampD	S0109	-	N-acetyl-anhydromuranmyl-L-alanine amidase
105	 52.16	0	117032..117886	+	284	30061677	ampE	S0110	-	regulatory protein AmpE
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.