IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
471	 52.90	0	516702..516977	+	91	30062044	-	S0505	-	IS1 orfA
472	 52.78	0	516896..517399	+	167	30062045	-	S0506	-	IS1 orfB
473	 53.80	0	518740..519555	-	271	30062046	fepC	S0508	-	iron-enterobactin transporter ATP-binding protein
474	 58.41	+1	519552..520544	-	330	30062047	fepG	S0509	-	iron-enterobactin transporter permease
475	 60.57	+2	520541..521557	-	338	30062048	fepD	S0510	-	iron-enterobactin transporter membrane protein
476	 57.10	+1	521656..522888	+	410	30062049	ybdA	S0511	-	enterobactin exporter EntS
477	 56.01	+1	522892..523848	-	318	30062050	fepB	S0512	-	iron-enterobactin transporter periplasmic binding protein
478	 56.30	+1	525325..526935	+	536	30062051	entE	S0514	-	enterobactin synthase subunit E
479	 55.01	0	526949..527806	+	285	30062052	entB	S0515	-	2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase
480	 57.56	+1	527806..528552	+	248	30062053	entA	S0516	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
481	 57.73	+1	528555..528968	+	137	30062054	ybdB	S0517	-	hypothetical protein
482	 57.08	+1	529149..531254	+	701	30062055	cstA	S0518	-	carbon starvation protein
483	 55.65	+1	531643..532731	-	362	30062056	ybdH	S0519	-	hypothetical protein
484	 53.75	0	532840..534000	+	386	30062057	ybdL	S0520	-	putative aminotransferase
485	 53.75	0	534520..535146	-	208	30062058	-	S0522	-	IS911 orfB
486	 44.88	-1	535386..535688	-	100	30062059	-	S0523	-	IS911 orfA
487	 49.10	0	536938..537216	+	92	30062060	-	S0526	-	ISEhe3 orfA
488	 50.55	0	537273..538085	+	270	30062061	-	S0527	-	ISEhe3 orfB
489	 46.85	-1	539566..540312	-	248	161486532	dsbG	S0528	-	disulfide isomerase/thiol-disulfide oxidase
490	 49.82	0	540684..541247	+	187	30062063	ahpC	S0529	-	alkyl hydroperoxide reductase subunit C
491	 52.44	0	541462..543057	+	531	30062064	ahpF	S0530	-	alkyl hydroperoxide reductase, F52a subunit
492	 50.12	0	543178..543606	-	142	30062065	ybdQ	S0531	-	hypothetical protein
493	 50.44	0	543827..545065	+	412	30062066	ybdR	S0532	-	putative oxidoreductase
494	 51.73	0	545146..545607	+	153	30062067	-	S0533	-	hypothetical protein
495	 54.74	0	545296..545706	-	136	30062068	rnk	S0534	-	nucleoside diphosphate kinase regulator
496	 50.91	0	545935..546759	-	274	30062069	rna	S0535	-	ribonuclease I
497	 55.06	0	548368..549246	-	292	30062070	citG	S0537	-	triphosphoribosyl-dephospho-CoA synthase
498	 59.51	+1	549283..549771	-	162	30062071	citX	S0538	-	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase
499	 56.03	+1	549775..551307	-	510	30062072	citF	S0539	-	citrate lyase alpha chain
500	 57.32	+1	551318..552226	-	302	30062073	citE	S0540	-	citrate lyase beta chain (acyl lyase subunit)
501	 55.56	0	552223..552519	-	98	30062074	citD	S0541	-	citrate lyase subunit gamma
502	 49.39	0	552534..553679	-	381	30062075	citC	S0542	-	citrate lyase synthetase (citrate (pro-3S)-lyase ligase
503	 52.78	0	554059..554562	-	167	30062076	-	S0543	-	IS1 orfB
504	 52.90	0	554481..554756	-	91	30062077	-	S0545	-	IS1 orfA
505	 51.28	0	555625..556443	+	272	30062078	ybhA	S0546	-	phosphotransferase
506	 53.73	0	556444..557502	-	352	30062079	modC	S0547	-	molybdate transporter ATP-binding protein
507	 53.91	0	557505..558194	-	229	30062080	modB	S0548	-	molybdate ABC transporter permease protein
508	 51.03	0	558194..558967	-	257	30062081	modA	S0549	-	molybdate transporter periplasmic protein
509	 41.33	-2	559134..559283	-	49	30062082	-	S0550	-	hypothetical protein
510	 52.60	0	559412..560200	+	262	30062083	modE	S0551	-	DNA-binding transcriptional regulator ModE
511	 52.00	0	560268..561740	+	490	30062084	modF	S0552	-	putative molybdenum transport ATP-binding protein ModF
512	 54.28	0	562001..563017	+	338	30062085	galE	S0553	-	UDP-galactose-4-epimerase
513	 55.30	0	563027..564073	+	348	30062086	galT	S0554	-	galactose-1-phosphate uridylyltransferase
514	 52.92	0	564077..565225	+	382	30062087	galK	S0555	-	galactokinase
515	 55.52	0	565219..566259	+	346	30062088	galM	S0556	-	aldose 1-epimerase
516	 51.66	0	566462..567214	+	250	30062089	gpmA	S0557	-	phosphoglyceromutase
517	 51.28	0	567381..568433	-	350	30062090	aroG	S0558	-	phospho-2-dehydro-3-deoxyheptonate aldolase
518	 50.13	0	568749..569129	+	126	30062091	-	S0559	-	putative homeobox protein
519	 52.87	0	569243..570184	+	313	30062092	ybgR	S0560	-	zinc transporter ZitB
520	 48.33	0	570181..570900	-	239	30062093	pnuC	S0561	-	PnuC protein
521	 50.19	0	570938..571981	-	347	30062094	nadA	S0562	-	quinolinate synthetase
522	 49.37	0	572965..573756	-	263	30062095	ybgF	S0568	-	hypothetical protein
523	 51.34	0	573766..574287	-	173	30062096	pal	S0569	-	peptidoglycan-associated outer membrane lipoprotein
524	 53.13	0	574322..575614	-	430	30062097	tolB	S0570	-	translocation protein TolB
525	 52.25	0	575747..576988	-	413	30062098	tolA	S0571	-	cell envelope integrity inner membrane protein TolA
526	 51.75	0	577053..577481	-	142	30062099	tolR	S0572	-	colicin uptake protein TolR
527	 50.07	0	577485..578177	-	230	30062100	tolQ	S0573	-	colicin uptake protein TolQ
528	 49.63	0	578174..578578	-	134	30062101	ybgC	S0574	-	acyl-CoA thioester hydrolase YbgC
529	 50.00	0	578728..579021	-	97	30062102	ybgE	S0575	-	hypothetical protein
530	 53.77	0	579149..580288	-	379	30062103	cydB	S0576	-	cytochrome d terminal oxidase polypeptide subunit II
531	 52.74	0	580304..581875	-	523	30062104	cydA	S0577	-	cytochrome d terminal oxidase, polypeptide subunit I
532	 49.47	0	582720..585353	-	877	30062105	ybgG	S0578	-	alpha-mannosidase
533	 54.53	0	585371..587347	-	658	30062106	hrsA	S0579	-	2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC
534	 48.25	0	587457..588401	+	314	30062107	farR	S0580	-	DNA-binding transcriptional repressor MngR
535	 52.87	0	588283..589152	-	289	30062108	sucD	S0581	-	succinyl-CoA synthetase subunit alpha
536	 54.76	0	589152..590318	-	388	30062109	sucC	S0582	-	succinyl-CoA synthetase subunit beta
537	 55.91	+1	590412..591629	-	405	30062110	sucB	S0583	-	dihydrolipoamide acetyltransferase
538	 55.39	0	591644..594445	-	933	30062111	kgd	S0584	-	alpha-ketoglutarate decarboxylase
539	 49.43	0	594427..594687	-	86	30062112	-	S0585	-	hypothetical protein
540	 52.02	0	594746..595462	-	238	30062113	sdhB	S0586	-	succinate dehydrogenase iron-sulfur subunit
541	 56.08	+1	595478..597244	-	588	30062114	sdhA	S0587	-	succinate dehydrogenase flavoprotein subunit
542	 51.15	0	597244..597591	-	115	30062115	sdhD	S0588	-	succinate dehydrogenase cytochrome b556 small membrane subunit
543	 49.23	0	597585..597974	-	129	161486531	sdhC	S0589	-	succinate dehydrogenase cytochrome b556 large membrane subunit
544	 49.92	0	598683..599966	+	427	30062117	gltA	S0590	-	type II citrate synthase
545	 47.62	0	600357..600923	+	188	30062118	ybgD	S0591	-	putative fimbrial-like protein
546	 49.39	0	600974..603433	+	819	30062119	ybgQ	S0592	-	putative outer membrane protein
547	 49.45	0	603448..604179	+	243	30062120	ybgP	S0593	-	putative chaperone
548	 55.59	0	605359..606450	+	363	30062121	abrB	S0595	-	putative transport protein
549	 52.65	0	606447..607238	-	263	30062122	nei	S0596	-	endonuclease VIII
550	 57.28	+1	607274..608008	-	244	30062123	ybgL	S0597	-	hypothetical protein
551	 57.23	+1	608924..609580	-	218	30062124	ybgJ	S0599	-	putative carboxylase
552	 53.36	0	609603..610346	-	247	30062125	ybgI	S0600	-	putative hydrolase-oxidase
553	 52.36	0	610617..612098	+	493	30062126	ybgH	S0601	-	putative transport protein
554	 53.28	0	612248..613666	-	472	30062127	phrB	S0602	-	deoxyribodipyrimidine photolyase
555	 49.80	0	613663..614172	-	169	30062128	ybgA	S0603	-	hypothetical protein
556	 53.47	0	614301..614588	+	95	30062129	-	S0604	-	hypothetical protein
557	 57.25	+1	615026..618412	-	1128	30062130	rhsE	S0605	-	putative Rhs-family protein
558	 52.78	0	619028..619531	-	167	30062131	-	S0606	-	IS1 orfB
559	 52.98	0	619450..619734	-	94	30062132	-	S0607	-	IS1 orfA
560	 51.69	0	620220..620426	-	68	30062133	ybfA	S0608	-	hypothetical protein
561	 54.60	0	620828..622501	+	557	30062134	kdpA	S0609	-	potassium-transporting ATPase subunit A
562	 54.62	0	624580..625152	+	190	30062135	kdpC	S0611	-	potassium-transporting ATPase subunit C
563	 50.38	0	631391..632710	+	439	30062136	potE	S0615	-	putrescine transporter
564	 55.27	0	632766..634406	-	546	30062137	pgm	S0616	-	phosphoglucomutase
565	 50.00	0	634432..634977	-	181	30062138	seqA	S0617	-	replication initiation regulator SeqA
566	 50.85	0	635162..635926	+	254	30062139	ybfF	S0618	-	hypothetical protein
567	 53.44	0	635997..636359	+	120	30062140	ybfE	S0619	-	LexA regulated protein
568	 48.59	0	636499..637029	+	176	30062141	fldA	S0620	-	flavodoxin FldA
569	 48.10	0	637318..637764	+	148	30062142	fur	S0621	-	ferric uptake regulator
570	 49.24	0	637848..638174	-	108	30062143	ybfN	S0622	-	hypothetical protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.