version 1.0
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 447 51.91 0 487035..488477 - 480 30062020 ybcZ S0479 - sensor kinase CusS 448 54.39 0 488467..489150 - 227 30062021 ylcA S0480 - DNA-binding transcriptional activator CusR 449 51.84 0 489307..490689 + 460 30062022 ylcB S0481 - copper/silver efflux system outer membrane protein CusC 450 45.05 -1 490713..491045 + 110 30062023 ylcC S0482 - periplasmic copper-binding protein 451 50.00 0 491986..492309 + 107 30062024 - S0484 - IntA 452 54.43 0 492349..492969 - 206 30062025 - S0485 - IS629 orfB 453 54.43 0 493232..493558 - 108 30062026 - S0486 - IS629 orfA 454 54.29 0 494699..495490 - 263 30062027 - S0487 - insertion sequence 2 OrfB protein 455 50.36 0 495562..495972 - 136 30062028 - S0488 - insertion sequence 2 OrfA protein 456 55.44 0 496745..499888 + 1047 30062029 ybdE S0490 - putative inner membrane component for iron transport 457 52.72 0 499989..501365 + 458 30062030 pheP S0491 - phenylalanine transporter 458 47.52 -1 501433..502680 - 415 30062031 ybdG S0492 - putative transport protein 459 51.38 0 502788..503441 - 217 30062032 nfnB S0493 - dihydropteridine reductase 460 46.88 -1 503535..503903 - 122 30062033 ybdF S0494 - hypothetical protein 461 50.60 0 503968..504216 - 82 30062034 ybdJ S0495 - hypothetical protein 462 52.46 0 504282..505400 - 372 30062035 ybdK S0496 - carboxylate-amine ligase 463 46.17 -1 505832..506353 + 173 30062036 IS103 S0497 - IS103 orf 464 47.45 -1 506350..506781 + 143 30062037 - S0498 - IS150 orfB 465 49.02 0 507298..507450 + 50 30062038 - S0499 - hypothetical protein 466 47.62 0 507702..507953 + 83 30062039 - S0500 - hypothetical protein 467 48.57 0 508075..508704 - 209 30062040 entD S0501 - phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 468 54.17 0 508870..511110 - 746 30062041 fepA S0502 - outer membrane receptor FepA 469 54.28 0 511353..512555 + 400 30062042 fes S0503 - enterobactin/ferric enterobactin esterase 470 56.50 +1 512773..516618 + 1281 30062043 entF S0504 - enterobactin synthase subunit F 471 52.90 0 516702..516977 + 91 30062044 - S0505 - IS1 orfA 472 52.78 0 516896..517399 + 167 30062045 - S0506 - IS1 orfB 473 53.80 0 518740..519555 - 271 30062046 fepC S0508 - iron-enterobactin transporter ATP-binding protein 474 58.41 +1 519552..520544 - 330 30062047 fepG S0509 - iron-enterobactin transporter permease 475 60.57 +2 520541..521557 - 338 30062048 fepD S0510 - iron-enterobactin transporter membrane protein 476 57.10 +1 521656..522888 + 410 30062049 ybdA S0511 - enterobactin exporter EntS 477 56.01 +1 522892..523848 - 318 30062050 fepB S0512 - iron-enterobactin transporter periplasmic binding protein 478 56.30 +1 525325..526935 + 536 30062051 entE S0514 - enterobactin synthase subunit E 479 55.01 0 526949..527806 + 285 30062052 entB S0515 - 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase 480 57.56 +1 527806..528552 + 248 30062053 entA S0516 - 2,3-dihydroxybenzoate-2,3-dehydrogenase 481 57.73 +1 528555..528968 + 137 30062054 ybdB S0517 - hypothetical protein 482 57.08 +1 529149..531254 + 701 30062055 cstA S0518 - carbon starvation protein 483 55.65 +1 531643..532731 - 362 30062056 ybdH S0519 - hypothetical protein 484 53.75 0 532840..534000 + 386 30062057 ybdL S0520 - putative aminotransferase 485 53.75 0 534520..535146 - 208 30062058 - S0522 - IS911 orfB 486 44.88 -1 535386..535688 - 100 30062059 - S0523 - IS911 orfA 487 49.10 0 536938..537216 + 92 30062060 - S0526 - ISEhe3 orfA 488 50.55 0 537273..538085 + 270 30062061 - S0527 - ISEhe3 orfB 489 46.85 -1 539566..540312 - 248 161486532 dsbG S0528 - disulfide isomerase/thiol-disulfide oxidase 490 49.82 0 540684..541247 + 187 30062063 ahpC S0529 - alkyl hydroperoxide reductase subunit C 491 52.44 0 541462..543057 + 531 30062064 ahpF S0530 - alkyl hydroperoxide reductase, F52a subunit 492 50.12 0 543178..543606 - 142 30062065 ybdQ S0531 - hypothetical protein 493 50.44 0 543827..545065 + 412 30062066 ybdR S0532 - putative oxidoreductase 494 51.73 0 545146..545607 + 153 30062067 - S0533 - hypothetical protein 495 54.74 0 545296..545706 - 136 30062068 rnk S0534 - nucleoside diphosphate kinase regulator 496 50.91 0 545935..546759 - 274 30062069 rna S0535 - ribonuclease I 497 55.06 0 548368..549246 - 292 30062070 citG S0537 - triphosphoribosyl-dephospho-CoA synthase 498 59.51 +1 549283..549771 - 162 30062071 citX S0538 - 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase 499 56.03 +1 549775..551307 - 510 30062072 citF S0539 - citrate lyase alpha chain 500 57.32 +1 551318..552226 - 302 30062073 citE S0540 - citrate lyase beta chain (acyl lyase subunit) 501 55.56 0 552223..552519 - 98 30062074 citD S0541 - citrate lyase subunit gamma 502 49.39 0 552534..553679 - 381 30062075 citC S0542 - citrate lyase synthetase (citrate (pro-3S)-lyase ligase 503 52.78 0 554059..554562 - 167 30062076 - S0543 - IS1 orfB 504 52.90 0 554481..554756 - 91 30062077 - S0545 - IS1 orfA 505 51.28 0 555625..556443 + 272 30062078 ybhA S0546 - phosphotransferase 506 53.73 0 556444..557502 - 352 30062079 modC S0547 - molybdate transporter ATP-binding protein 507 53.91 0 557505..558194 - 229 30062080 modB S0548 - molybdate ABC transporter permease protein 508 51.03 0 558194..558967 - 257 30062081 modA S0549 - molybdate transporter periplasmic protein 509 41.33 -2 559134..559283 - 49 30062082 - S0550 - hypothetical protein 510 52.60 0 559412..560200 + 262 30062083 modE S0551 - DNA-binding transcriptional regulator ModE 511 52.00 0 560268..561740 + 490 30062084 modF S0552 - putative molybdenum transport ATP-binding protein ModF 512 54.28 0 562001..563017 + 338 30062085 galE S0553 - UDP-galactose-4-epimerase 513 55.30 0 563027..564073 + 348 30062086 galT S0554 - galactose-1-phosphate uridylyltransferase 514 52.92 0 564077..565225 + 382 30062087 galK S0555 - galactokinase 515 55.52 0 565219..566259 + 346 30062088 galM S0556 - aldose 1-epimerase 516 51.66 0 566462..567214 + 250 30062089 gpmA S0557 - phosphoglyceromutase 517 51.28 0 567381..568433 - 350 30062090 aroG S0558 - phospho-2-dehydro-3-deoxyheptonate aldolase 518 50.13 0 568749..569129 + 126 30062091 - S0559 - putative homeobox protein 519 52.87 0 569243..570184 + 313 30062092 ybgR S0560 - zinc transporter ZitB 520 48.33 0 570181..570900 - 239 30062093 pnuC S0561 - PnuC protein 521 50.19 0 570938..571981 - 347 30062094 nadA S0562 - quinolinate synthetase 522 49.37 0 572965..573756 - 263 30062095 ybgF S0568 - hypothetical protein 523 51.34 0 573766..574287 - 173 30062096 pal S0569 - peptidoglycan-associated outer membrane lipoprotein 524 53.13 0 574322..575614 - 430 30062097 tolB S0570 - translocation protein TolB 525 52.25 0 575747..576988 - 413 30062098 tolA S0571 - cell envelope integrity inner membrane protein TolA 526 51.75 0 577053..577481 - 142 30062099 tolR S0572 - colicin uptake protein TolR 527 50.07 0 577485..578177 - 230 30062100 tolQ S0573 - colicin uptake protein TolQ 528 49.63 0 578174..578578 - 134 30062101 ybgC S0574 - acyl-CoA thioester hydrolase YbgC 529 50.00 0 578728..579021 - 97 30062102 ybgE S0575 - hypothetical protein 530 53.77 0 579149..580288 - 379 30062103 cydB S0576 - cytochrome d terminal oxidase polypeptide subunit II 531 52.74 0 580304..581875 - 523 30062104 cydA S0577 - cytochrome d terminal oxidase, polypeptide subunit I 532 49.47 0 582720..585353 - 877 30062105 ybgG S0578 - alpha-mannosidase 533 54.53 0 585371..587347 - 658 30062106 hrsA S0579 - 2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC 534 48.25 0 587457..588401 + 314 30062107 farR S0580 - DNA-binding transcriptional repressor MngR 535 52.87 0 588283..589152 - 289 30062108 sucD S0581 - succinyl-CoA synthetase subunit alpha 536 54.76 0 589152..590318 - 388 30062109 sucC S0582 - succinyl-CoA synthetase subunit beta 537 55.91 +1 590412..591629 - 405 30062110 sucB S0583 - dihydrolipoamide acetyltransferase 538 55.39 0 591644..594445 - 933 30062111 kgd S0584 - alpha-ketoglutarate decarboxylase 539 49.43 0 594427..594687 - 86 30062112 - S0585 - hypothetical protein 540 52.02 0 594746..595462 - 238 30062113 sdhB S0586 - succinate dehydrogenase iron-sulfur subunit 541 56.08 +1 595478..597244 - 588 30062114 sdhA S0587 - succinate dehydrogenase flavoprotein subunit 542 51.15 0 597244..597591 - 115 30062115 sdhD S0588 - succinate dehydrogenase cytochrome b556 small membrane subunit 543 49.23 0 597585..597974 - 129 161486531 sdhC S0589 - succinate dehydrogenase cytochrome b556 large membrane subunit 544 49.92 0 598683..599966 + 427 30062117 gltA S0590 - type II citrate synthase 545 47.62 0 600357..600923 + 188 30062118 ybgD S0591 - putative fimbrial-like protein 546 49.39 0 600974..603433 + 819 30062119 ybgQ S0592 - putative outer membrane protein 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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