IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
442	 43.15	-2	477297..477989	+	230	30062015	sfmC	S0470	-	putative chaperone
443	 53.17	0	478532..479035	-	167	30062016	-	S0471	-	IS1 orfB
444	 52.90	0	478954..479229	-	91	30062017	-	S0472	-	IS1 orfA
445	 45.41	-1	479858..480619	-	253	30062018	envY	S0475	-	envelope protein
446	 51.74	0	480802..481692	-	296	30062019	ybcH	S0476	-	hypothetical protein
447	 51.91	0	487035..488477	-	480	30062020	ybcZ	S0479	-	sensor kinase CusS
448	 54.39	0	488467..489150	-	227	30062021	ylcA	S0480	-	DNA-binding transcriptional activator CusR
449	 51.84	0	489307..490689	+	460	30062022	ylcB	S0481	-	copper/silver efflux system outer membrane protein CusC
450	 45.05	-1	490713..491045	+	110	30062023	ylcC	S0482	-	periplasmic copper-binding protein
451	 50.00	0	491986..492309	+	107	30062024	-	S0484	-	IntA
452	 54.43	0	492349..492969	-	206	30062025	-	S0485	-	IS629 orfB
453	 54.43	0	493232..493558	-	108	30062026	-	S0486	-	IS629 orfA
454	 54.29	0	494699..495490	-	263	30062027	-	S0487	-	insertion sequence 2 OrfB protein
455	 50.36	0	495562..495972	-	136	30062028	-	S0488	-	insertion sequence 2 OrfA protein
456	 55.44	0	496745..499888	+	1047	30062029	ybdE	S0490	-	putative inner membrane component for iron transport
457	 52.72	0	499989..501365	+	458	30062030	pheP	S0491	-	phenylalanine transporter
458	 47.52	-1	501433..502680	-	415	30062031	ybdG	S0492	-	putative transport protein
459	 51.38	0	502788..503441	-	217	30062032	nfnB	S0493	-	dihydropteridine reductase
460	 46.88	-1	503535..503903	-	122	30062033	ybdF	S0494	-	hypothetical protein
461	 50.60	0	503968..504216	-	82	30062034	ybdJ	S0495	-	hypothetical protein
462	 52.46	0	504282..505400	-	372	30062035	ybdK	S0496	-	carboxylate-amine ligase
463	 46.17	-1	505832..506353	+	173	30062036	IS103	S0497	-	IS103 orf
464	 47.45	-1	506350..506781	+	143	30062037	-	S0498	-	IS150 orfB
465	 49.02	0	507298..507450	+	50	30062038	-	S0499	-	hypothetical protein
466	 47.62	0	507702..507953	+	83	30062039	-	S0500	-	hypothetical protein
467	 48.57	0	508075..508704	-	209	30062040	entD	S0501	-	phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
468	 54.17	0	508870..511110	-	746	30062041	fepA	S0502	-	outer membrane receptor FepA
469	 54.28	0	511353..512555	+	400	30062042	fes	S0503	-	enterobactin/ferric enterobactin esterase
470	 56.50	+1	512773..516618	+	1281	30062043	entF	S0504	-	enterobactin synthase subunit F
471	 52.90	0	516702..516977	+	91	30062044	-	S0505	-	IS1 orfA
472	 52.78	0	516896..517399	+	167	30062045	-	S0506	-	IS1 orfB
473	 53.80	0	518740..519555	-	271	30062046	fepC	S0508	-	iron-enterobactin transporter ATP-binding protein
474	 58.41	+1	519552..520544	-	330	30062047	fepG	S0509	-	iron-enterobactin transporter permease
475	 60.57	+2	520541..521557	-	338	30062048	fepD	S0510	-	iron-enterobactin transporter membrane protein
476	 57.10	+1	521656..522888	+	410	30062049	ybdA	S0511	-	enterobactin exporter EntS
477	 56.01	+1	522892..523848	-	318	30062050	fepB	S0512	-	iron-enterobactin transporter periplasmic binding protein
478	 56.30	+1	525325..526935	+	536	30062051	entE	S0514	-	enterobactin synthase subunit E
479	 55.01	0	526949..527806	+	285	30062052	entB	S0515	-	2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase
480	 57.56	+1	527806..528552	+	248	30062053	entA	S0516	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
481	 57.73	+1	528555..528968	+	137	30062054	ybdB	S0517	-	hypothetical protein
482	 57.08	+1	529149..531254	+	701	30062055	cstA	S0518	-	carbon starvation protein
483	 55.65	+1	531643..532731	-	362	30062056	ybdH	S0519	-	hypothetical protein
484	 53.75	0	532840..534000	+	386	30062057	ybdL	S0520	-	putative aminotransferase
485	 53.75	0	534520..535146	-	208	30062058	-	S0522	-	IS911 orfB
486	 44.88	-1	535386..535688	-	100	30062059	-	S0523	-	IS911 orfA
487	 49.10	0	536938..537216	+	92	30062060	-	S0526	-	ISEhe3 orfA
488	 50.55	0	537273..538085	+	270	30062061	-	S0527	-	ISEhe3 orfB
489	 46.85	-1	539566..540312	-	248	161486532	dsbG	S0528	-	disulfide isomerase/thiol-disulfide oxidase
490	 49.82	0	540684..541247	+	187	30062063	ahpC	S0529	-	alkyl hydroperoxide reductase subunit C
491	 52.44	0	541462..543057	+	531	30062064	ahpF	S0530	-	alkyl hydroperoxide reductase, F52a subunit
492	 50.12	0	543178..543606	-	142	30062065	ybdQ	S0531	-	hypothetical protein
493	 50.44	0	543827..545065	+	412	30062066	ybdR	S0532	-	putative oxidoreductase
494	 51.73	0	545146..545607	+	153	30062067	-	S0533	-	hypothetical protein
495	 54.74	0	545296..545706	-	136	30062068	rnk	S0534	-	nucleoside diphosphate kinase regulator
496	 50.91	0	545935..546759	-	274	30062069	rna	S0535	-	ribonuclease I
497	 55.06	0	548368..549246	-	292	30062070	citG	S0537	-	triphosphoribosyl-dephospho-CoA synthase
498	 59.51	+1	549283..549771	-	162	30062071	citX	S0538	-	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase
499	 56.03	+1	549775..551307	-	510	30062072	citF	S0539	-	citrate lyase alpha chain
500	 57.32	+1	551318..552226	-	302	30062073	citE	S0540	-	citrate lyase beta chain (acyl lyase subunit)
501	 55.56	0	552223..552519	-	98	30062074	citD	S0541	-	citrate lyase subunit gamma
502	 49.39	0	552534..553679	-	381	30062075	citC	S0542	-	citrate lyase synthetase (citrate (pro-3S)-lyase ligase
503	 52.78	0	554059..554562	-	167	30062076	-	S0543	-	IS1 orfB
504	 52.90	0	554481..554756	-	91	30062077	-	S0545	-	IS1 orfA
505	 51.28	0	555625..556443	+	272	30062078	ybhA	S0546	-	phosphotransferase
506	 53.73	0	556444..557502	-	352	30062079	modC	S0547	-	molybdate transporter ATP-binding protein
507	 53.91	0	557505..558194	-	229	30062080	modB	S0548	-	molybdate ABC transporter permease protein
508	 51.03	0	558194..558967	-	257	30062081	modA	S0549	-	molybdate transporter periplasmic protein
509	 41.33	-2	559134..559283	-	49	30062082	-	S0550	-	hypothetical protein
510	 52.60	0	559412..560200	+	262	30062083	modE	S0551	-	DNA-binding transcriptional regulator ModE
511	 52.00	0	560268..561740	+	490	30062084	modF	S0552	-	putative molybdenum transport ATP-binding protein ModF
512	 54.28	0	562001..563017	+	338	30062085	galE	S0553	-	UDP-galactose-4-epimerase
513	 55.30	0	563027..564073	+	348	30062086	galT	S0554	-	galactose-1-phosphate uridylyltransferase
514	 52.92	0	564077..565225	+	382	30062087	galK	S0555	-	galactokinase
515	 55.52	0	565219..566259	+	346	30062088	galM	S0556	-	aldose 1-epimerase
516	 51.66	0	566462..567214	+	250	30062089	gpmA	S0557	-	phosphoglyceromutase
517	 51.28	0	567381..568433	-	350	30062090	aroG	S0558	-	phospho-2-dehydro-3-deoxyheptonate aldolase
518	 50.13	0	568749..569129	+	126	30062091	-	S0559	-	putative homeobox protein
519	 52.87	0	569243..570184	+	313	30062092	ybgR	S0560	-	zinc transporter ZitB
520	 48.33	0	570181..570900	-	239	30062093	pnuC	S0561	-	PnuC protein
521	 50.19	0	570938..571981	-	347	30062094	nadA	S0562	-	quinolinate synthetase
522	 49.37	0	572965..573756	-	263	30062095	ybgF	S0568	-	hypothetical protein
523	 51.34	0	573766..574287	-	173	30062096	pal	S0569	-	peptidoglycan-associated outer membrane lipoprotein
524	 53.13	0	574322..575614	-	430	30062097	tolB	S0570	-	translocation protein TolB
525	 52.25	0	575747..576988	-	413	30062098	tolA	S0571	-	cell envelope integrity inner membrane protein TolA
526	 51.75	0	577053..577481	-	142	30062099	tolR	S0572	-	colicin uptake protein TolR
527	 50.07	0	577485..578177	-	230	30062100	tolQ	S0573	-	colicin uptake protein TolQ
528	 49.63	0	578174..578578	-	134	30062101	ybgC	S0574	-	acyl-CoA thioester hydrolase YbgC
529	 50.00	0	578728..579021	-	97	30062102	ybgE	S0575	-	hypothetical protein
530	 53.77	0	579149..580288	-	379	30062103	cydB	S0576	-	cytochrome d terminal oxidase polypeptide subunit II
531	 52.74	0	580304..581875	-	523	30062104	cydA	S0577	-	cytochrome d terminal oxidase, polypeptide subunit I
532	 49.47	0	582720..585353	-	877	30062105	ybgG	S0578	-	alpha-mannosidase
533	 54.53	0	585371..587347	-	658	30062106	hrsA	S0579	-	2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC
534	 48.25	0	587457..588401	+	314	30062107	farR	S0580	-	DNA-binding transcriptional repressor MngR
535	 52.87	0	588283..589152	-	289	30062108	sucD	S0581	-	succinyl-CoA synthetase subunit alpha
536	 54.76	0	589152..590318	-	388	30062109	sucC	S0582	-	succinyl-CoA synthetase subunit beta
537	 55.91	+1	590412..591629	-	405	30062110	sucB	S0583	-	dihydrolipoamide acetyltransferase
538	 55.39	0	591644..594445	-	933	30062111	kgd	S0584	-	alpha-ketoglutarate decarboxylase
539	 49.43	0	594427..594687	-	86	30062112	-	S0585	-	hypothetical protein
540	 52.02	0	594746..595462	-	238	30062113	sdhB	S0586	-	succinate dehydrogenase iron-sulfur subunit
541	 56.08	+1	595478..597244	-	588	30062114	sdhA	S0587	-	succinate dehydrogenase flavoprotein subunit
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.