IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
421	 56.62	+1	455853..456539	+	228	30061994	ybbA	S0447	-	putative ABC transporter ATP-binding protein YbbA
422	 54.61	0	459664..460758	-	364	30061995	ybbB	S0449	-	tRNA 2-selenouridine synthase
423	 51.67	0	460827..461753	-	308	30061996	ybbS	S0450	-	DNA-binding transcriptional activator AllS
424	 51.35	0	461983..462465	+	160	30061997	ybbT	S0451	-	ureidoglycolate hydrolase
425	 52.82	0	462543..463358	+	271	30061998	ybbU	S0452	-	DNA-binding transcriptional repressor AllR
426	 53.09	0	463448..465229	+	593	30061999	gcl	S0453	-	glyoxylate carboligase
427	 46.45	-1	465242..465523	+	93	30062000	gip	S0454	-	glyoxylate-induced protein
428	 52.58	0	465534..466037	-	167	30062001	-	S0455	-	IS1 orfB
429	 52.17	0	465956..466231	-	91	30062002	-	S0456	-	IS1 orfA
430	 46.13	-1	466260..466931	-	223	30062003	ylbA	S0457	-	hypothetical protein
431	 51.55	0	466942..468099	-	385	30062004	ylbB	S0458	-	allantoate amidohydrolase
432	 57.16	+1	468821..469714	+	297	30062005	arcC	S0460	-	carbamate kinase
433	 56.27	+1	469852..470919	-	355	30062006	purK	S0461	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
434	 59.41	+1	470916..471425	-	169	30062007	purE	S0462	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
435	 53.94	0	471543..472265	-	240	30062008	ybbF	S0463	-	UDP-2,3-diacylglucosamine hydrolase
436	 47.68	0	472268..472762	-	164	30062009	ppiB	S0464	-	peptidyl-prolyl cis-trans isomerase B (rotamase B)
437	 54.76	0	472936..474321	+	461	30062010	cysS	S0465	-	cysteinyl-tRNA synthetase
438	 52.55	0	474357..474866	-	169	30062011	ybcI	S0466	-	hypothetical protein
439	 54.93	0	474974..475186	-	70	161486533	ybcJ	S0467	-	hypothetical protein
440	 54.56	0	475188..476054	-	288	30062013	folD	S0468	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
441	 43.75	-1	476502..477077	+	191	30062014	sfmA	S0469	-	putative fimbrial-like protein
442	 43.15	-2	477297..477989	+	230	30062015	sfmC	S0470	-	putative chaperone
443	 53.17	0	478532..479035	-	167	30062016	-	S0471	-	IS1 orfB
444	 52.90	0	478954..479229	-	91	30062017	-	S0472	-	IS1 orfA
445	 45.41	-1	479858..480619	-	253	30062018	envY	S0475	-	envelope protein
446	 51.74	0	480802..481692	-	296	30062019	ybcH	S0476	-	hypothetical protein
447	 51.91	0	487035..488477	-	480	30062020	ybcZ	S0479	-	sensor kinase CusS
448	 54.39	0	488467..489150	-	227	30062021	ylcA	S0480	-	DNA-binding transcriptional activator CusR
449	 51.84	0	489307..490689	+	460	30062022	ylcB	S0481	-	copper/silver efflux system outer membrane protein CusC
450	 45.05	-1	490713..491045	+	110	30062023	ylcC	S0482	-	periplasmic copper-binding protein
451	 50.00	0	491986..492309	+	107	30062024	-	S0484	-	IntA
452	 54.43	0	492349..492969	-	206	30062025	-	S0485	-	IS629 orfB
453	 54.43	0	493232..493558	-	108	30062026	-	S0486	-	IS629 orfA
454	 54.29	0	494699..495490	-	263	30062027	-	S0487	-	insertion sequence 2 OrfB protein
455	 50.36	0	495562..495972	-	136	30062028	-	S0488	-	insertion sequence 2 OrfA protein
456	 55.44	0	496745..499888	+	1047	30062029	ybdE	S0490	-	putative inner membrane component for iron transport
457	 52.72	0	499989..501365	+	458	30062030	pheP	S0491	-	phenylalanine transporter
458	 47.52	-1	501433..502680	-	415	30062031	ybdG	S0492	-	putative transport protein
459	 51.38	0	502788..503441	-	217	30062032	nfnB	S0493	-	dihydropteridine reductase
460	 46.88	-1	503535..503903	-	122	30062033	ybdF	S0494	-	hypothetical protein
461	 50.60	0	503968..504216	-	82	30062034	ybdJ	S0495	-	hypothetical protein
462	 52.46	0	504282..505400	-	372	30062035	ybdK	S0496	-	carboxylate-amine ligase
463	 46.17	-1	505832..506353	+	173	30062036	IS103	S0497	-	IS103 orf
464	 47.45	-1	506350..506781	+	143	30062037	-	S0498	-	IS150 orfB
465	 49.02	0	507298..507450	+	50	30062038	-	S0499	-	hypothetical protein
466	 47.62	0	507702..507953	+	83	30062039	-	S0500	-	hypothetical protein
467	 48.57	0	508075..508704	-	209	30062040	entD	S0501	-	phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
468	 54.17	0	508870..511110	-	746	30062041	fepA	S0502	-	outer membrane receptor FepA
469	 54.28	0	511353..512555	+	400	30062042	fes	S0503	-	enterobactin/ferric enterobactin esterase
470	 56.50	+1	512773..516618	+	1281	30062043	entF	S0504	-	enterobactin synthase subunit F
471	 52.90	0	516702..516977	+	91	30062044	-	S0505	-	IS1 orfA
472	 52.78	0	516896..517399	+	167	30062045	-	S0506	-	IS1 orfB
473	 53.80	0	518740..519555	-	271	30062046	fepC	S0508	-	iron-enterobactin transporter ATP-binding protein
474	 58.41	+1	519552..520544	-	330	30062047	fepG	S0509	-	iron-enterobactin transporter permease
475	 60.57	+2	520541..521557	-	338	30062048	fepD	S0510	-	iron-enterobactin transporter membrane protein
476	 57.10	+1	521656..522888	+	410	30062049	ybdA	S0511	-	enterobactin exporter EntS
477	 56.01	+1	522892..523848	-	318	30062050	fepB	S0512	-	iron-enterobactin transporter periplasmic binding protein
478	 56.30	+1	525325..526935	+	536	30062051	entE	S0514	-	enterobactin synthase subunit E
479	 55.01	0	526949..527806	+	285	30062052	entB	S0515	-	2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase
480	 57.56	+1	527806..528552	+	248	30062053	entA	S0516	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
481	 57.73	+1	528555..528968	+	137	30062054	ybdB	S0517	-	hypothetical protein
482	 57.08	+1	529149..531254	+	701	30062055	cstA	S0518	-	carbon starvation protein
483	 55.65	+1	531643..532731	-	362	30062056	ybdH	S0519	-	hypothetical protein
484	 53.75	0	532840..534000	+	386	30062057	ybdL	S0520	-	putative aminotransferase
485	 53.75	0	534520..535146	-	208	30062058	-	S0522	-	IS911 orfB
486	 44.88	-1	535386..535688	-	100	30062059	-	S0523	-	IS911 orfA
487	 49.10	0	536938..537216	+	92	30062060	-	S0526	-	ISEhe3 orfA
488	 50.55	0	537273..538085	+	270	30062061	-	S0527	-	ISEhe3 orfB
489	 46.85	-1	539566..540312	-	248	161486532	dsbG	S0528	-	disulfide isomerase/thiol-disulfide oxidase
490	 49.82	0	540684..541247	+	187	30062063	ahpC	S0529	-	alkyl hydroperoxide reductase subunit C
491	 52.44	0	541462..543057	+	531	30062064	ahpF	S0530	-	alkyl hydroperoxide reductase, F52a subunit
492	 50.12	0	543178..543606	-	142	30062065	ybdQ	S0531	-	hypothetical protein
493	 50.44	0	543827..545065	+	412	30062066	ybdR	S0532	-	putative oxidoreductase
494	 51.73	0	545146..545607	+	153	30062067	-	S0533	-	hypothetical protein
495	 54.74	0	545296..545706	-	136	30062068	rnk	S0534	-	nucleoside diphosphate kinase regulator
496	 50.91	0	545935..546759	-	274	30062069	rna	S0535	-	ribonuclease I
497	 55.06	0	548368..549246	-	292	30062070	citG	S0537	-	triphosphoribosyl-dephospho-CoA synthase
498	 59.51	+1	549283..549771	-	162	30062071	citX	S0538	-	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase
499	 56.03	+1	549775..551307	-	510	30062072	citF	S0539	-	citrate lyase alpha chain
500	 57.32	+1	551318..552226	-	302	30062073	citE	S0540	-	citrate lyase beta chain (acyl lyase subunit)
501	 55.56	0	552223..552519	-	98	30062074	citD	S0541	-	citrate lyase subunit gamma
502	 49.39	0	552534..553679	-	381	30062075	citC	S0542	-	citrate lyase synthetase (citrate (pro-3S)-lyase ligase
503	 52.78	0	554059..554562	-	167	30062076	-	S0543	-	IS1 orfB
504	 52.90	0	554481..554756	-	91	30062077	-	S0545	-	IS1 orfA
505	 51.28	0	555625..556443	+	272	30062078	ybhA	S0546	-	phosphotransferase
506	 53.73	0	556444..557502	-	352	30062079	modC	S0547	-	molybdate transporter ATP-binding protein
507	 53.91	0	557505..558194	-	229	30062080	modB	S0548	-	molybdate ABC transporter permease protein
508	 51.03	0	558194..558967	-	257	30062081	modA	S0549	-	molybdate transporter periplasmic protein
509	 41.33	-2	559134..559283	-	49	30062082	-	S0550	-	hypothetical protein
510	 52.60	0	559412..560200	+	262	30062083	modE	S0551	-	DNA-binding transcriptional regulator ModE
511	 52.00	0	560268..561740	+	490	30062084	modF	S0552	-	putative molybdenum transport ATP-binding protein ModF
512	 54.28	0	562001..563017	+	338	30062085	galE	S0553	-	UDP-galactose-4-epimerase
513	 55.30	0	563027..564073	+	348	30062086	galT	S0554	-	galactose-1-phosphate uridylyltransferase
514	 52.92	0	564077..565225	+	382	30062087	galK	S0555	-	galactokinase
515	 55.52	0	565219..566259	+	346	30062088	galM	S0556	-	aldose 1-epimerase
516	 51.66	0	566462..567214	+	250	30062089	gpmA	S0557	-	phosphoglyceromutase
517	 51.28	0	567381..568433	-	350	30062090	aroG	S0558	-	phospho-2-dehydro-3-deoxyheptonate aldolase
518	 50.13	0	568749..569129	+	126	30062091	-	S0559	-	putative homeobox protein
519	 52.87	0	569243..570184	+	313	30062092	ybgR	S0560	-	zinc transporter ZitB
520	 48.33	0	570181..570900	-	239	30062093	pnuC	S0561	-	PnuC protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.