IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
384	 50.00	0	413004..413357	+	117	30061957	ybaA	S0408	-	hypothetical protein
385	 47.71	0	413399..414949	-	516	30061958	ylaB	S0409	-	hypothetical protein
386	 47.13	-1	415113..415583	-	156	30061959	ylaC	S0410	-	hypothetical protein
387	 40.18	-2	416422..416640	-	72	30061960	hha	S0412	-	hemolysin expression-modulating protein
388	 40.80	-2	416666..417040	-	124	30061961	ybaJ	S0413	-	hypothetical protein
389	 53.78	0	417586..420735	-	1049	30061962	acrB	S0414	-	acriflavine resistance protein
390	 53.69	0	420758..421951	-	397	30061963	acrA	S0415	-	acriflavin resistance protein AcrA precursor
391	 45.37	-1	422093..422740	+	215	30061964	acrR	S0416	-	DNA-binding transcriptional repressor AcrR
392	 51.92	0	422868..426230	+	1120	30061965	aefA	S0417	-	potassium efflux protein KefA
393	 46.91	-1	426442..426603	-	53	30061966	ybaM	S0418	-	hypothetical protein
394	 59.09	+1	426617..427144	-	175	30061967	priC	S0419	-	primosomal replication protein N''
395	 52.12	0	427214..427591	+	125	30061968	ybaN	S0420	-	hypothetical protein
396	 53.62	0	427744..428295	+	183	30061969	apt	S0421	-	adenine phosphoribosyltransferase
397	 57.48	+1	428424..430349	+	641	30061970	dnaX	S0422	-	DNA polymerase III subunits gamma and tau
398	 52.42	0	430402..430731	+	109	30061971	ybaB	S0423	-	hypothetical protein
399	 57.43	+1	430731..431336	+	201	30061972	recR	S0424	-	recombination protein RecR
400	 52.64	0	431446..433320	+	624	30061973	htpG	S0425	-	heat shock protein 90
401	 51.63	0	433501..434145	+	214	30061974	adk	S0426	-	adenylate kinase
402	 54.31	0	434277..435239	+	320	30061975	hemH	S0427	-	ferrochelatase
403	 50.79	0	435377..436195	-	272	30061976	ybaC	S0428	-	putative lipase
404	 52.11	0	436347..437651	+	434	30061977	gsk	S0429	-	inosine-guanosine kinase
405	 55.10	0	437784..439460	-	558	30061978	ybaL	S0430	-	putative cation:proton antiport protein
406	 52.33	0	439698..440918	-	406	30061979	fsr	S0431	-	fosmidomycin resistance protein
407	 50.76	0	441136..442788	+	550	30061980	ushA	S0432	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
408	 50.83	0	442825..443304	-	159	30061981	ybaK	S0433	-	hypothetical protein
409	 54.09	0	443508..444302	-	264	30061982	ybaP	S0434	-	putative ligase
410	 44.44	-1	444386..444781	+	131	30061983	ybaQ	S0435	-	hypothetical protein
411	 57.84	+1	444996..447500	-	834	30061984	ybaR	S0436	-	copper exporting ATPase
412	 53.38	0	447762..448694	+	310	30061985	ybaS	S0437	-	glutaminase
413	 53.13	0	448697..449989	+	430	30061986	ybaT	S0438	-	putative amino acid/amine transport protein
414	 58.58	+1	450114..450521	+	135	30061987	ybbI	S0439	-	DNA-binding transcriptional regulator CueR
415	 57.68	+1	450522..450977	-	151	30061988	ybbJ	S0440	-	hypothetical protein
416	 52.40	0	450977..451894	-	305	30061989	ybbK	S0441	-	putative protease
417	 45.43	-1	452040..452717	+	225	30061990	ybbL	S0442	-	putative ABC transporter ATP-binding protein YbbL
418	 46.59	-1	452677..453483	+	268	30061991	ybbM	S0443	-	putative metal resistance protein
419	 55.56	0	453546..454436	-	296	30061992	ybbN	S0444	-	putative thioredoxin-like protein
420	 53.70	0	454461..455270	-	269	30061993	ybbO	S0445	-	short chain dehydrogenase
421	 56.62	+1	455853..456539	+	228	30061994	ybbA	S0447	-	putative ABC transporter ATP-binding protein YbbA
422	 54.61	0	459664..460758	-	364	30061995	ybbB	S0449	-	tRNA 2-selenouridine synthase
423	 51.67	0	460827..461753	-	308	30061996	ybbS	S0450	-	DNA-binding transcriptional activator AllS
424	 51.35	0	461983..462465	+	160	30061997	ybbT	S0451	-	ureidoglycolate hydrolase
425	 52.82	0	462543..463358	+	271	30061998	ybbU	S0452	-	DNA-binding transcriptional repressor AllR
426	 53.09	0	463448..465229	+	593	30061999	gcl	S0453	-	glyoxylate carboligase
427	 46.45	-1	465242..465523	+	93	30062000	gip	S0454	-	glyoxylate-induced protein
428	 52.58	0	465534..466037	-	167	30062001	-	S0455	-	IS1 orfB
429	 52.17	0	465956..466231	-	91	30062002	-	S0456	-	IS1 orfA
430	 46.13	-1	466260..466931	-	223	30062003	ylbA	S0457	-	hypothetical protein
431	 51.55	0	466942..468099	-	385	30062004	ylbB	S0458	-	allantoate amidohydrolase
432	 57.16	+1	468821..469714	+	297	30062005	arcC	S0460	-	carbamate kinase
433	 56.27	+1	469852..470919	-	355	30062006	purK	S0461	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
434	 59.41	+1	470916..471425	-	169	30062007	purE	S0462	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
435	 53.94	0	471543..472265	-	240	30062008	ybbF	S0463	-	UDP-2,3-diacylglucosamine hydrolase
436	 47.68	0	472268..472762	-	164	30062009	ppiB	S0464	-	peptidyl-prolyl cis-trans isomerase B (rotamase B)
437	 54.76	0	472936..474321	+	461	30062010	cysS	S0465	-	cysteinyl-tRNA synthetase
438	 52.55	0	474357..474866	-	169	30062011	ybcI	S0466	-	hypothetical protein
439	 54.93	0	474974..475186	-	70	161486533	ybcJ	S0467	-	hypothetical protein
440	 54.56	0	475188..476054	-	288	30062013	folD	S0468	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
441	 43.75	-1	476502..477077	+	191	30062014	sfmA	S0469	-	putative fimbrial-like protein
442	 43.15	-2	477297..477989	+	230	30062015	sfmC	S0470	-	putative chaperone
443	 53.17	0	478532..479035	-	167	30062016	-	S0471	-	IS1 orfB
444	 52.90	0	478954..479229	-	91	30062017	-	S0472	-	IS1 orfA
445	 45.41	-1	479858..480619	-	253	30062018	envY	S0475	-	envelope protein
446	 51.74	0	480802..481692	-	296	30062019	ybcH	S0476	-	hypothetical protein
447	 51.91	0	487035..488477	-	480	30062020	ybcZ	S0479	-	sensor kinase CusS
448	 54.39	0	488467..489150	-	227	30062021	ylcA	S0480	-	DNA-binding transcriptional activator CusR
449	 51.84	0	489307..490689	+	460	30062022	ylcB	S0481	-	copper/silver efflux system outer membrane protein CusC
450	 45.05	-1	490713..491045	+	110	30062023	ylcC	S0482	-	periplasmic copper-binding protein
451	 50.00	0	491986..492309	+	107	30062024	-	S0484	-	IntA
452	 54.43	0	492349..492969	-	206	30062025	-	S0485	-	IS629 orfB
453	 54.43	0	493232..493558	-	108	30062026	-	S0486	-	IS629 orfA
454	 54.29	0	494699..495490	-	263	30062027	-	S0487	-	insertion sequence 2 OrfB protein
455	 50.36	0	495562..495972	-	136	30062028	-	S0488	-	insertion sequence 2 OrfA protein
456	 55.44	0	496745..499888	+	1047	30062029	ybdE	S0490	-	putative inner membrane component for iron transport
457	 52.72	0	499989..501365	+	458	30062030	pheP	S0491	-	phenylalanine transporter
458	 47.52	-1	501433..502680	-	415	30062031	ybdG	S0492	-	putative transport protein
459	 51.38	0	502788..503441	-	217	30062032	nfnB	S0493	-	dihydropteridine reductase
460	 46.88	-1	503535..503903	-	122	30062033	ybdF	S0494	-	hypothetical protein
461	 50.60	0	503968..504216	-	82	30062034	ybdJ	S0495	-	hypothetical protein
462	 52.46	0	504282..505400	-	372	30062035	ybdK	S0496	-	carboxylate-amine ligase
463	 46.17	-1	505832..506353	+	173	30062036	IS103	S0497	-	IS103 orf
464	 47.45	-1	506350..506781	+	143	30062037	-	S0498	-	IS150 orfB
465	 49.02	0	507298..507450	+	50	30062038	-	S0499	-	hypothetical protein
466	 47.62	0	507702..507953	+	83	30062039	-	S0500	-	hypothetical protein
467	 48.57	0	508075..508704	-	209	30062040	entD	S0501	-	phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
468	 54.17	0	508870..511110	-	746	30062041	fepA	S0502	-	outer membrane receptor FepA
469	 54.28	0	511353..512555	+	400	30062042	fes	S0503	-	enterobactin/ferric enterobactin esterase
470	 56.50	+1	512773..516618	+	1281	30062043	entF	S0504	-	enterobactin synthase subunit F
471	 52.90	0	516702..516977	+	91	30062044	-	S0505	-	IS1 orfA
472	 52.78	0	516896..517399	+	167	30062045	-	S0506	-	IS1 orfB
473	 53.80	0	518740..519555	-	271	30062046	fepC	S0508	-	iron-enterobactin transporter ATP-binding protein
474	 58.41	+1	519552..520544	-	330	30062047	fepG	S0509	-	iron-enterobactin transporter permease
475	 60.57	+2	520541..521557	-	338	30062048	fepD	S0510	-	iron-enterobactin transporter membrane protein
476	 57.10	+1	521656..522888	+	410	30062049	ybdA	S0511	-	enterobactin exporter EntS
477	 56.01	+1	522892..523848	-	318	30062050	fepB	S0512	-	iron-enterobactin transporter periplasmic binding protein
478	 56.30	+1	525325..526935	+	536	30062051	entE	S0514	-	enterobactin synthase subunit E
479	 55.01	0	526949..527806	+	285	30062052	entB	S0515	-	2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase
480	 57.56	+1	527806..528552	+	248	30062053	entA	S0516	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
481	 57.73	+1	528555..528968	+	137	30062054	ybdB	S0517	-	hypothetical protein
482	 57.08	+1	529149..531254	+	701	30062055	cstA	S0518	-	carbon starvation protein
483	 55.65	+1	531643..532731	-	362	30062056	ybdH	S0519	-	hypothetical protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.