IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
354	 53.38	0	379600..380487	-	295	30061927	cyoE	S0374	-	protoheme IX farnesyltransferase
355	 50.00	0	380502..380831	-	109	30061928	cyoD	S0375	-	cytochrome o ubiquinol oxidase subunit IV
356	 53.66	0	380831..381445	-	204	30061929	cyoC	S0376	-	cytochrome o ubiquinol oxidase subunit III
357	 53.24	0	383978..385027	-	349	30061930	-	S0379	-	ISSfl3 orfD
358	 52.91	0	385243..385431	-	62	146133915	-	S0380	-	ISSfl3 orfC
359	 51.85	0	385428..385562	-	44	30061932	-	S0381	-	ISSfl3 orfC
360	 56.90	+1	385582..385929	-	115	30061933	-	S0382	-	ISSfl3 orfB
361	 51.61	0	385926..386423	-	165	30061934	-	S0383	-	ISSfl3 orfA
362	 54.27	0	386970..388445	-	491	30061935	ampG	S0384	-	muropeptide transporter
363	 51.12	0	388489..389067	-	192	161486535	yajG	S0385	-	hypothetical protein
364	 48.43	0	389372..389689	+	105	161486534	bolA	S0386	-	transcriptional regulator BolA
365	 51.19	0	390033..391331	+	432	30061938	tig	S0387	-	trigger factor
366	 50.96	0	391578..392201	+	207	30061939	clpP	S0388	-	ATP-dependent Clp protease proteolytic subunit
367	 51.76	0	392327..393601	+	424	30061940	clpX	S0389	-	ATP-dependent protease ATP-binding subunit
368	 52.36	0	393789..396143	+	784	30061941	lon	S0390	-	DNA-binding ATP-dependent protease La
369	 49.45	0	396352..396624	+	90	30061942	hupB	S0391	-	transcriptional regulator HU subunit beta
370	 52.19	0	396816..398687	+	623	30061943	ybaU	S0392	-	peptidyl-prolyl cis-trans isomerase (rotamase D)
371	 54.84	0	398838..399209	+	123	30061944	ybaV	S0393	-	hypothetical protein
372	 46.12	-1	399303..399701	+	132	30061945	ybaW	S0394	-	hypothetical protein
373	 51.29	0	399753..400448	-	231	30061946	ybaX	S0395	-	queuosine biosynthesis protein QueC
374	 51.26	0	402293..403123	+	276	30061947	cof	S0397	-	hypothetical protein
375	 49.82	0	403190..403735	+	181	30061948	ybaO	S0398	-	putative LRP-like transcriptional regulator
376	 54.15	0	403765..405537	+	590	30061949	mdlA	S0399	-	putative multidrug transporter membrane\ATP-binding components
377	 55.50	0	405530..407311	+	593	30061950	mdlB	S0400	-	putative multidrug transporter membrane\ATP-binding components
378	 51.03	0	407492..407830	+	112	30061951	glnK	S0401	-	nitrogen regulatory protein P-II 2
379	 55.56	0	407860..409146	+	428	30061952	amtB	S0402	-	ammonium transporter
380	 52.50	0	409195..410055	-	286	30061953	tesB	S0403	-	acyl-CoA thioesterase II
381	 54.28	0	410273..410845	+	190	30061954	ybaY	S0404	-	hypothetical protein
382	 54.33	0	410956..412284	+	442	30061955	-	S0405	-	IS4 orf
383	 56.73	+1	412314..412625	-	103	30061956	ybaZ	S0406	-	hypothetical protein
384	 50.00	0	413004..413357	+	117	30061957	ybaA	S0408	-	hypothetical protein
385	 47.71	0	413399..414949	-	516	30061958	ylaB	S0409	-	hypothetical protein
386	 47.13	-1	415113..415583	-	156	30061959	ylaC	S0410	-	hypothetical protein
387	 40.18	-2	416422..416640	-	72	30061960	hha	S0412	-	hemolysin expression-modulating protein
388	 40.80	-2	416666..417040	-	124	30061961	ybaJ	S0413	-	hypothetical protein
389	 53.78	0	417586..420735	-	1049	30061962	acrB	S0414	-	acriflavine resistance protein
390	 53.69	0	420758..421951	-	397	30061963	acrA	S0415	-	acriflavin resistance protein AcrA precursor
391	 45.37	-1	422093..422740	+	215	30061964	acrR	S0416	-	DNA-binding transcriptional repressor AcrR
392	 51.92	0	422868..426230	+	1120	30061965	aefA	S0417	-	potassium efflux protein KefA
393	 46.91	-1	426442..426603	-	53	30061966	ybaM	S0418	-	hypothetical protein
394	 59.09	+1	426617..427144	-	175	30061967	priC	S0419	-	primosomal replication protein N''
395	 52.12	0	427214..427591	+	125	30061968	ybaN	S0420	-	hypothetical protein
396	 53.62	0	427744..428295	+	183	30061969	apt	S0421	-	adenine phosphoribosyltransferase
397	 57.48	+1	428424..430349	+	641	30061970	dnaX	S0422	-	DNA polymerase III subunits gamma and tau
398	 52.42	0	430402..430731	+	109	30061971	ybaB	S0423	-	hypothetical protein
399	 57.43	+1	430731..431336	+	201	30061972	recR	S0424	-	recombination protein RecR
400	 52.64	0	431446..433320	+	624	30061973	htpG	S0425	-	heat shock protein 90
401	 51.63	0	433501..434145	+	214	30061974	adk	S0426	-	adenylate kinase
402	 54.31	0	434277..435239	+	320	30061975	hemH	S0427	-	ferrochelatase
403	 50.79	0	435377..436195	-	272	30061976	ybaC	S0428	-	putative lipase
404	 52.11	0	436347..437651	+	434	30061977	gsk	S0429	-	inosine-guanosine kinase
405	 55.10	0	437784..439460	-	558	30061978	ybaL	S0430	-	putative cation:proton antiport protein
406	 52.33	0	439698..440918	-	406	30061979	fsr	S0431	-	fosmidomycin resistance protein
407	 50.76	0	441136..442788	+	550	30061980	ushA	S0432	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
408	 50.83	0	442825..443304	-	159	30061981	ybaK	S0433	-	hypothetical protein
409	 54.09	0	443508..444302	-	264	30061982	ybaP	S0434	-	putative ligase
410	 44.44	-1	444386..444781	+	131	30061983	ybaQ	S0435	-	hypothetical protein
411	 57.84	+1	444996..447500	-	834	30061984	ybaR	S0436	-	copper exporting ATPase
412	 53.38	0	447762..448694	+	310	30061985	ybaS	S0437	-	glutaminase
413	 53.13	0	448697..449989	+	430	30061986	ybaT	S0438	-	putative amino acid/amine transport protein
414	 58.58	+1	450114..450521	+	135	30061987	ybbI	S0439	-	DNA-binding transcriptional regulator CueR
415	 57.68	+1	450522..450977	-	151	30061988	ybbJ	S0440	-	hypothetical protein
416	 52.40	0	450977..451894	-	305	30061989	ybbK	S0441	-	putative protease
417	 45.43	-1	452040..452717	+	225	30061990	ybbL	S0442	-	putative ABC transporter ATP-binding protein YbbL
418	 46.59	-1	452677..453483	+	268	30061991	ybbM	S0443	-	putative metal resistance protein
419	 55.56	0	453546..454436	-	296	30061992	ybbN	S0444	-	putative thioredoxin-like protein
420	 53.70	0	454461..455270	-	269	30061993	ybbO	S0445	-	short chain dehydrogenase
421	 56.62	+1	455853..456539	+	228	30061994	ybbA	S0447	-	putative ABC transporter ATP-binding protein YbbA
422	 54.61	0	459664..460758	-	364	30061995	ybbB	S0449	-	tRNA 2-selenouridine synthase
423	 51.67	0	460827..461753	-	308	30061996	ybbS	S0450	-	DNA-binding transcriptional activator AllS
424	 51.35	0	461983..462465	+	160	30061997	ybbT	S0451	-	ureidoglycolate hydrolase
425	 52.82	0	462543..463358	+	271	30061998	ybbU	S0452	-	DNA-binding transcriptional repressor AllR
426	 53.09	0	463448..465229	+	593	30061999	gcl	S0453	-	glyoxylate carboligase
427	 46.45	-1	465242..465523	+	93	30062000	gip	S0454	-	glyoxylate-induced protein
428	 52.58	0	465534..466037	-	167	30062001	-	S0455	-	IS1 orfB
429	 52.17	0	465956..466231	-	91	30062002	-	S0456	-	IS1 orfA
430	 46.13	-1	466260..466931	-	223	30062003	ylbA	S0457	-	hypothetical protein
431	 51.55	0	466942..468099	-	385	30062004	ylbB	S0458	-	allantoate amidohydrolase
432	 57.16	+1	468821..469714	+	297	30062005	arcC	S0460	-	carbamate kinase
433	 56.27	+1	469852..470919	-	355	30062006	purK	S0461	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
434	 59.41	+1	470916..471425	-	169	30062007	purE	S0462	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
435	 53.94	0	471543..472265	-	240	30062008	ybbF	S0463	-	UDP-2,3-diacylglucosamine hydrolase
436	 47.68	0	472268..472762	-	164	30062009	ppiB	S0464	-	peptidyl-prolyl cis-trans isomerase B (rotamase B)
437	 54.76	0	472936..474321	+	461	30062010	cysS	S0465	-	cysteinyl-tRNA synthetase
438	 52.55	0	474357..474866	-	169	30062011	ybcI	S0466	-	hypothetical protein
439	 54.93	0	474974..475186	-	70	161486533	ybcJ	S0467	-	hypothetical protein
440	 54.56	0	475188..476054	-	288	30062013	folD	S0468	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
441	 43.75	-1	476502..477077	+	191	30062014	sfmA	S0469	-	putative fimbrial-like protein
442	 43.15	-2	477297..477989	+	230	30062015	sfmC	S0470	-	putative chaperone
443	 53.17	0	478532..479035	-	167	30062016	-	S0471	-	IS1 orfB
444	 52.90	0	478954..479229	-	91	30062017	-	S0472	-	IS1 orfA
445	 45.41	-1	479858..480619	-	253	30062018	envY	S0475	-	envelope protein
446	 51.74	0	480802..481692	-	296	30062019	ybcH	S0476	-	hypothetical protein
447	 51.91	0	487035..488477	-	480	30062020	ybcZ	S0479	-	sensor kinase CusS
448	 54.39	0	488467..489150	-	227	30062021	ylcA	S0480	-	DNA-binding transcriptional activator CusR
449	 51.84	0	489307..490689	+	460	30062022	ylcB	S0481	-	copper/silver efflux system outer membrane protein CusC
450	 45.05	-1	490713..491045	+	110	30062023	ylcC	S0482	-	periplasmic copper-binding protein
451	 50.00	0	491986..492309	+	107	30062024	-	S0484	-	IntA
452	 54.43	0	492349..492969	-	206	30062025	-	S0485	-	IS629 orfB
453	 54.43	0	493232..493558	-	108	30062026	-	S0486	-	IS629 orfA
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.