IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3961	 57.04	+1	4491044..4492591	+	515	30065539	yjeF	S4589	-	hypothetical protein
3962	 52.38	0	4492563..4493024	+	153	30065540	yjeE	S4591	-	putative ATPase
3963	 54.86	0	4493043..4494380	+	445	30065541	amiB	S4592	-	N-acetylmuramoyl-l-alanine amidase II
3964	 56.49	+1	4494390..4496237	+	615	30065542	mutL	S4593	-	DNA mismatch repair protein
3965	 53.42	0	4496230..4497180	+	316	30065543	miaA	S4594	-	tRNA delta(2)-isopentenylpyrophosphate transferase
3966	 48.54	0	4497266..4497574	+	102	30065544	hfq	S4595	-	RNA-binding protein Hfq
3967	 53.86	0	4497650..4498930	+	426	30065545	hflX	S4596	-	putative GTPase HflX
3968	 56.19	+1	4499016..4500275	+	419	30065546	hflK	S4597	-	FtsH protease regulator HflK
3969	 52.64	0	4500278..4501282	+	334	30065547	hflC	S4598	-	FtsH protease regulator HflC
3970	 48.99	0	4501364..4501561	+	65	30065548	yjeT	S4599	-	hypothetical protein
3971	 53.81	0	4501665..4502963	+	432	30065549	purA	S4600	-	adenylosuccinate synthetase
3972	 48.83	0	4503168..4503593	+	141	30065550	yjeB	S4601	-	transcriptional repressor NsrR
3973	 55.12	0	4503632..4506073	+	813	161486368	vacB	S4602	-	exoribonuclease R
3974	 56.01	+1	4506253..4506984	+	243	30065552	yjfH	S4603	-	23S rRNA (guanosine-2'-O-)-methyltransferase
3975	 52.90	0	4507085..4507360	+	91	30065553	-	S4604	-	IS1 orfA
3976	 52.58	0	4507279..4507782	+	167	30065554	-	S4605	-	IS1 orfB
3977	 49.61	0	4508048..4508686	+	212	30065555	yjfM	S4607	-	hypothetical protein
3978	 53.26	0	4508689..4509852	+	387	30065556	yjfC	S4608	-	putative synthetase/amidase
3979	 52.78	0	4511235..4511738	-	167	30065557	-	S4610	-	IS1 orfB
3980	 52.54	0	4511657..4511932	-	91	30065558	-	S4611	-	IS1 orfA
3981	 51.16	0	4512455..4512757	-	100	30065559	yjfN	S4613	-	hypothetical protein
3982	 48.79	0	4512879..4513208	-	109	161486367	yjfO	S4614	-	hypothetical protein
3983	 53.47	0	4513390..4514139	+	249	30065561	yjfP	S4615	-	esterase
3984	 50.79	0	4514136..4514891	-	251	30065562	yjfQ	S4616	-	transcriptional repressor UlaR
3985	 51.73	0	4514999..4516069	-	356	30065563	yjfR	S4617	-	putative L-ascorbate 6-phosphate lactonase
3986	 52.36	0	4516418..4517815	+	465	161486366	ulaA	S4618	-	ascorbate-specific PTS system enzyme IIC
3987	 50.98	0	4517831..4518136	+	101	30065565	sgaB	S4619	-	L-ascorbate-specific enzyme IIB component of PTS
3988	 55.27	0	4518146..4518610	+	154	30065566	ptxA	S4620	-	L-ascorbate-specific enzyme IIA component of PTS
3989	 56.07	+1	4518624..4519274	+	216	30065567	ulaD	S4621	-	3-keto-L-gulonate-6-phosphate decarboxylase
3990	 57.31	+1	4519284..4520138	+	284	30065568	sgaU	S4622	-	L-xylulose 5-phosphate 3-epimerase
3991	 55.31	0	4520138..4520824	+	228	30065569	sgaE	S4623	-	L-ribulose-5-phosphate 4-epimerase
3992	 46.01	-1	4520953..4521228	-	91	30065570	yjfY	S4624	-	hypothetical protein
3993	 52.78	0	4521555..4521950	+	131	30065571	rpsF	S4625	-	30S ribosomal protein S6
3994	 51.75	0	4521957..4522271	+	104	30065572	priB	S4626	-	primosomal replication protein N
3995	 52.63	0	4522276..4522503	+	75	30065573	rpsR	S4627	-	30S ribosomal protein S18
3996	 49.78	0	4522545..4522994	+	149	30065574	rplI	S4628	-	50S ribosomal protein L9
3997	 49.10	0	4523692..4523970	+	92	30065575	-	S4629	-	ISEhe3 orfA
3998	 53.26	0	4524027..4524608	+	193	30065576	-	S4630	-	ISEhe3 orfB
3999	 52.24	0	4524649..4525362	-	237	30065577	-	S4631	-	IS600 orfB
4000	 46.20	-1	4525503..4525805	-	100	30065578	-	S4632	-	IS600 orfA
4001	 44.24	-1	4525870..4526190	+	106	30065579	-	S4633	-	hypothetical protein
4002	 40.58	-2	4526799..4528454	-	551	30065580	-	S4635	-	hypothetical protein
4003	 52.90	0	4532719..4532994	+	91	30065581	-	S4638	-	IS1 orfA
4004	 52.78	0	4532913..4533416	+	167	30065582	-	S4639	-	IS1 orfB
4005	 55.44	0	4534262..4535116	-	284	30065583	yjiA	S4640	-	putative GTP-binding protein YjiA
4006	 50.00	0	4535229..4535432	-	67	30065584	yjiX	S4641	-	hypothetical protein
4007	 56.28	+1	4535482..4537647	-	721	30065585	yjiY	S4642	-	putative carbon starvation protein
4008	 54.19	0	4538025..4538537	-	170	30065586	hpaC	S4643	-	component C of the 4HPA-hydroxylase
4009	 46.09	-1	4540366..4541133	-	255	30065587	-	S4646	-	hypothetical protein
4010	 46.02	-1	4541304..4542194	-	296	30065588	hpaA	S4647	-	putative 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
4011	 46.39	-1	4542204..4543559	-	451	30065589	hpaX	S4648	-	putative 4-hydroxyphenylacetate permease
4012	 58.33	+1	4543581..4544384	-	267	30065590	hpaI	S4649	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
4013	 57.59	+1	4544395..4545198	-	267	30065591	hpaH	S4650	-	2-oxo-hept-3-ene-1, 7-dioate hydratase
4014	 49.61	0	4545266..4545646	-	126	30065592	hpaF	S4651	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
4015	 54.34	0	4545656..4546507	-	283	30065593	hpaD	S4652	-	homoprotocatechuate dyoxygenase
4016	 58.55	+1	4546509..4547975	-	488	30065594	hpaE	S4653	-	5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase
4017	 55.97	+1	4547972..4549261	-	429	30065595	hpaG	S4654	-	5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase
4018	 50.56	0	4549533..4549979	+	148	30065596	hpcR	S4655	-	regulator of the 4HPA-hydroxylase operon
4019	 53.99	0	4550098..4551762	+	554	30065597	tsr	S4656	-	methyl-accepting chemotaxis protein I, serine sensor receptor
4020	 51.76	0	4551811..4553172	-	453	30065598	yjiZ	S4657	-	putative transport protein
4021	 46.22	-1	4553387..4554193	-	268	30065599	yjjM	S4658	-	hypothetical protein
4022	 52.01	0	4555600..4557891	-	763	161486365	mdoB	S4660	-	phosphoglycerol transferase I
4023	 49.80	0	4558145..4558642	-	165	30065601	yjjA	S4661	-	hypothetical protein
4024	 50.95	0	4558688..4559425	-	245	30065602	dnaC	S4662	-	DNA replication protein DnaC
4025	 56.67	+1	4559428..4559967	-	179	30065603	dnaT	S4663	-	primosomal protein I
4026	 47.71	0	4560074..4560400	-	108	30065604	yjjB	S4664	-	hypothetical protein
4027	 52.90	0	4561932..4562207	+	91	30065605	-	S4666	-	IS1 orfA
4028	 52.98	0	4562126..4562629	+	167	30065606	-	S4667	-	IS1 orfB
4029	 45.83	-1	4563227..4563850	+	207	161486364	bglJ	S4669	-	DNA-binding transcriptional activator BglJ
4030	 52.85	0	4563888..4564676	-	262	30065608	fhuF	S4670	-	ferric iron reductase involved in ferric hydroximate transport
4031	 54.65	0	4565691..4566722	-	343	30065609	rsmC	S4674	-	16S ribosomal RNA m2G1207 methyltransferase
4032	 57.73	+1	4566825..4567238	+	137	30065610	holD	S4675	-	DNA polymerase III subunit psi
4033	 52.80	0	4567207..4567653	+	148	30065611	rimI	S4676	-	ribosomal-protein-alanine N-acetyltransferase
4034	 52.65	0	4567668..4568345	+	225	30065612	yjjG	S4677	-	nucleotidase
4035	 53.58	0	4568436..4570025	+	529	30065613	prfC	S4678	-	peptide chain release factor 3
4036	 50.99	0	4570418..4571023	+	201	30065614	osmY	S4679	-	periplasmic protein
4037	 54.19	0	4571423..4572496	+	357	30065615	yjjU	S4680	-	hypothetical protein
4038	 55.56	0	4572637..4573275	+	212	30065616	yjjV	S4681	-	hypothetical protein
4039	 54.51	0	4573489..4574352	-	287	30065617	yjjW	S4682	-	putative activating enzyme
4040	 53.24	0	4574324..4575865	-	513	30065618	yjjI	S4683	-	hypothetical protein
4041	 55.13	0	4576123..4576902	+	259	30065619	deoC	S4684	-	deoxyribose-phosphate aldolase
4042	 55.40	0	4577029..4578351	+	440	30065620	deoA	S4685	-	thymidine phosphorylase
4043	 54.00	0	4578404..4579627	+	407	30065621	deoB	S4686	-	phosphopentomutase
4044	 52.92	0	4579684..4580403	+	239	30065622	deoD	S4687	-	purine nucleoside phosphorylase
4045	 41.67	-2	4580564..4580827	-	87	30065623	-	S4688	-	hypothetical protein
4046	 55.35	0	4581902..4582546	-	214	30065624	smp	S4690	-	hypothetical protein
4047	 56.86	+1	4582652..4583620	+	322	30065625	serB	S4691	-	phosphoserine phosphatase
4048	 57.63	+1	4583669..4585051	+	460	30065626	sms	S4692	-	DNA repair protein RadA
4049	 51.42	0	4585072..4586304	+	410	161486363	nadR	S4693	-	nicotinamide-nucleotide adenylyltransferase
4050	 55.34	0	4586612..4588279	-	555	30065628	yjjK	S4694	-	putative ABC transporter ATP-binding protein
4051	 54.64	0	4588490..4590427	+	645	161486362	slt	S4695	-	lytic murein transglycosylase
4052	 53.21	0	4590517..4590843	+	108	30065630	trpR	S4696	-	Trp operon repressor
4053	 56.02	+1	4591500..4592147	+	215	30065631	gpmB	S4698	-	phosphoglycerate mutase
4054	 53.10	0	4592144..4593013	-	289	30065632	rob	S4699	-	right origin-binding protein
4055	 49.37	0	4593224..4593697	+	157	30065633	creA	S4700	-	hypothetical protein
4056	 54.93	0	4593710..4594399	+	229	30065634	creB	S4701	-	DNA-binding response regulator CreB
4057	 53.89	0	4594399..4595823	+	474	30065635	creC	S4702	-	sensory histidine kinase CreC
4058	 49.59	0	4595881..4597233	+	450	30065636	creD	S4703	-	hypothetical protein
4059	 51.05	0	4597292..4598008	-	238	30065637	arcA	S4704	-	two-component response regulator
4060	 42.55	-2	4598104..4598244	+	46	30065638	yjjY	S4705	-	hypothetical protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.