IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3630	 44.67	-1	4142263..4142862	-	199	30065208	slp	S4227	-	outer membrane protein induced after carbon starvation
3631	 45.87	-1	4144880..4145836	-	318	30065209	-	S4229	-	hypothetical protein
3632	 52.78	0	4145867..4146370	-	167	30065210	-	S4230	-	IS1 orfB
3633	 52.90	0	4146289..4146564	-	91	30065211	-	S4231	-	IS1 orfA
3634	 49.86	0	4146620..4146964	+	114	30065212	arsR	S4232	-	DNA-binding transcriptional repressor ArsR
3635	 54.50	0	4147018..4148307	+	429	30065213	arsB	S4233	-	arsenical pump membrane protein
3636	 52.11	0	4148320..4148745	+	141	30065214	arsC	S4234	-	arsenate reductase
3637	 52.90	0	4148901..4149176	+	91	30065215	-	S4235	-	IS1 orfB
3638	 52.98	0	4149095..4149598	+	167	30065216	-	S4236	-	IS1 orfB
3639	 54.32	0	4150511..4151863	-	450	30065217	gor	S4237	-	glutathione reductase
3640	 55.28	0	4151935..4152777	-	280	30065218	yhiR	S4238	-	hypothetical protein
3641	 55.21	0	4152980..4155022	+	680	30065219	prlC	S4239	-	oligopeptidase A
3642	 59.10	+1	4155030..4155782	+	250	30065220	yhiQ	S4240	-	putative methyltransferase
3643	 48.51	0	4157618..4158052	-	144	30065221	uspA	S4242	-	universal stress protein
3644	 47.02	-1	4158446..4158781	+	111	30065222	yhiO	S4243	-	universal stress protein UspB
3645	 54.00	0	4158852..4160351	-	499	30065223	pitA	S4244	-	low-affinity phosphate transport protein
3646	 54.00	0	4160583..4161782	+	399	30065224	yhiN	S4245	-	hypothetical protein
3647	 52.54	0	4162311..4162586	+	91	30065225	-	S4246	-	IS1 orfA
3648	 52.98	0	4162505..4163008	+	167	30065226	-	S4247	-	IS1 orfB
3649	 46.33	-1	4163019..4163318	-	99	30065227	-	S4248	-	IS600 orfA
3650	 50.29	0	4163583..4164608	+	341	30065228	-	S4249	-	hypothetical protein
3651	 42.07	-2	4166011..4166571	+	186	30065229	-	S4250	-	chaperone
3652	 43.43	-2	4166615..4167694	+	359	30065230	-	S4254	-	fimbrial protein remnant
3653	 55.30	0	4167949..4168854	-	301	161486387	-	S4252	-	insertion element IS2 transposase InsD
3654	 53.01	0	4168812..4169177	-	121	161486386	-	S4253	-	insertion sequence 2 OrfA protein
3655	 46.59	-1	4170556..4171068	+	170	30065233	-	S4255	-	hypothetical protein
3656	 37.27	-2	4171175..4171936	-	253	30065234	-	S4836	-	hypothetical protein
3657	 35.56	-2	4172182..4172946	+	254	30065235	-	S4837	-	hypothetical protein
3658	 35.66	-2	4172900..4173415	+	171	30065236	-	S4838	-	hypothetical protein
3659	 37.52	-2	4176769..4178391	+	540	30065237	yhiJ	S4259	-	hypothetical protein
3660	 59.18	+1	4178757..4179824	+	355	30065238	yhiI	S4260	-	hypothetical protein
3661	 56.65	+1	4179821..4182556	+	911	30065239	yhiH	S4261	-	putative ATP-binding component of a transport system
3662	 54.67	0	4182556..4183680	+	374	30065240	yhhJ	S4262	-	putative transporter
3663	 43.33	-2	4184011..4184370	+	119	30065241	-	S4263	-	hypothetical protein
3664	 55.72	+1	4184490..4184891	-	133	30065242	yhhG	S4264	-	nickel responsive regulator
3665	 55.76	+1	4184897..4185703	-	268	30065243	nikE	S4265	-	nickel transporter ATP-binding protein
3666	 58.95	+1	4185700..4186464	-	254	30065244	nikD	S4266	-	nickel transporter ATP-binding protein
3667	 60.31	+2	4186464..4187297	-	277	30065245	nikC	S4267	-	nickel transporter permease NikC
3668	 57.99	+1	4187294..4188238	-	314	30065246	nikB	S4268	-	nickel transporter permease NikB
3669	 53.40	0	4188238..4189812	-	524	30065247	nikA	S4269	-	periplasmic binding protein for nickel
3670	 56.63	+1	4189923..4190510	-	195	30065248	yhhU	S4270	-	holo-(acyl carrier protein) synthase 2
3671	 51.24	0	4190565..4191614	-	349	30065249	yhhT	S4271	-	hypothetical protein
3672	 56.65	+1	4191748..4192965	+	405	161486385	yhhS	S4272	-	hypothetical protein
3673	 51.43	0	4192969..4193526	-	185	161486384	-	S4273	-	hypothetical protein
3674	 50.45	0	4193599..4194264	-	221	30065252	yhhQ	S4274	-	hypothetical protein
3675	 54.07	0	4194485..4194730	+	81	30065253	yhhP	S4275	-	cell developmental protein SirA
3676	 57.94	+1	4194832..4197030	-	732	30065254	zntA	S4276	-	zinc/cadmium/mercury/lead-transporting ATPase
3677	 56.46	+1	4197104..4197730	-	208	30065255	yhhN	S4277	-	putative enzyme
3678	 50.83	0	4197871..4198230	+	119	30065256	yhhM	S4278	-	putative receptor
3679	 44.81	-1	4198233..4198502	-	89	30065257	yhhL	S4279	-	hypothetical protein
3680	 53.77	0	4198492..4199088	-	198	30065258	yhhF	S4280	-	16S rRNA m(2)G966-methyltransferase
3681	 53.17	0	4199238..4200734	+	498	30065259	ftsY	S4281	-	cell division protein FtsY
3682	 55.46	0	4200737..4201405	+	222	30065260	ftsE	S4282	-	cell division protein FtsE
3683	 53.64	0	4201398..4202456	+	352	30065261	ftsX	S4283	-	cell division protein FtsX
3684	 54.04	0	4202701..4203555	+	284	30065262	rpoH	S4284	-	RNA polymerase factor sigma-32
3685	 53.75	0	4203769..4204929	+	386	30065263	livJ	S4285	-	high-affinity amino acid transport protein, periplasmic binding protein
3686	 55.99	+1	4205128..4205511	-	127	30065264	yhhK	S4286	-	hypothetical protein
3687	 54.41	0	4205935..4207044	+	369	30065265	livK	S4287	-	high-affinity leucine-specific transport protein, periplasmic binding protein
3688	 55.77	+1	4207092..4208018	+	308	30065266	livH	S4288	-	branched-chain amino acid transporter permease subunit LivH
3689	 56.26	+1	4208015..4209292	+	425	30065267	livM	S4289	-	leucine/isoleucine/valine transporter permease subunit
3690	 53.91	0	4209289..4210056	+	255	30065268	livG	S4290	-	leucine/isoleucine/valine transporter ATP-binding subunit
3691	 57.42	+1	4210058..4210771	+	237	30065269	livF	S4291	-	leucine/isoleucine/valine transporter ATP-binding subunit
3692	 53.45	0	4211168..4212484	+	438	30065270	ugpB	S4292	-	glycerol-3-phosphate transporter periplasmic binding protein
3693	 55.52	0	4212582..4213469	+	295	30065271	ugpA	S4293	-	glycerol-3-phosphate transporter permease
3694	 54.26	0	4213466..4214311	+	281	30065272	ugpE	S4294	-	glycerol-3-phosphate transporter membrane protein
3695	 56.18	+1	4215300..4216043	+	247	30065273	ugpQ	S4296	-	cytoplasmic glycerophosphodiester phosphodiesterase
3696	 51.47	0	4216030..4216470	-	146	30065274	yhhA	S4297	-	hypothetical protein
3697	 55.08	0	4216590..4218332	+	580	30065275	ggt	S4298	-	gamma-glutamyltranspeptidase periplasmic precursor
3698	 51.94	0	4218391..4218879	-	162	30065276	yhhY	S4299	-	putative acetyltransferase YhhY
3699	 50.87	0	4219212..4220249	+	345	30065277	yhhX	S4300	-	putative dehydrogenase
3700	 52.30	0	4220372..4221067	+	231	30065278	yhhW	S4301	-	hypothetical protein
3701	 54.95	0	4221348..4222286	+	312	30065279	gntR	S4302	-	regulator of gluconate (gnt) operon
3702	 50.57	0	4222425..4222952	+	175	161486383	gntK	S4303	-	gluconate kinase 1
3703	 55.87	+1	4223019..4224296	+	425	30065281	gntU	S4304	-	low affinity gluconate transporter
3704	 50.17	0	4224353..4224946	-	197	30065282	yhgN	S4306	-	dITP- and XTP- hydrolyzing protein
3705	 54.08	0	4225138..4226241	+	367	30065283	asd	S4307	-	aspartate-semialdehyde dehydrogenase
3706	 53.04	0	4226514..4228700	+	728	30065284	glgB	S4308	-	glycogen branching enzyme
3707	 54.15	0	4228697..4230670	+	657	30065285	glgX	S4309	-	glycogen debranching enzyme
3708	 52.31	0	4230688..4231983	+	431	30065286	glgC	S4310	-	glucose-1-phosphate adenylyltransferase
3709	 54.74	0	4231983..4233416	+	477	30065287	glgA	S4311	-	glycogen synthase
3710	 50.86	0	4233435..4235882	+	815	30065288	glgP	S4312	-	glycogen phosphorylase
3711	 55.94	+1	4236000..4236866	+	288	30065289	-	S4313	-	IS4 orf
3712	 50.88	0	4236872..4237327	+	151	30065290	-	S4314	-	IS4 orf
3713	 55.65	+1	4237934..4239412	-	492	30065291	glpD	S4316	-	glycerol-3-phosphate dehydrogenase
3714	 54.43	0	4239630..4239956	+	108	30065292	glpE	S4317	-	thiosulfate sulfurtransferase
3715	 54.18	0	4240007..4240831	+	274	30065293	glpG	S4318	-	intramembrane serine protease GlpG
3716	 54.94	0	4240848..4241606	+	252	30065294	glpR	S4319	-	DNA-binding transcriptional repressor GlpR
3717	 55.35	0	4241588..4243186	-	532	30065295	rtcR	S4320	-	putative 2-component regulator
3718	 51.34	0	4243367..4244593	+	408	30065296	rtcB	S4321	-	hypothetical protein
3719	 55.94	+1	4245008..4245613	+	201	30065297	yhgJ	S4323	-	RNA 3'-terminal-phosphate cyclase
3720	 51.92	0	4248973..4251366	+	797	30065298	malP	S4325	-	maltodextrin phosphorylase
3721	 54.82	0	4251376..4253460	+	694	30065299	malQ	S4326	-	4-alpha-glucanotransferase
3722	 53.76	0	4253505..4254821	-	438	30065300	gntT	S4327	-	high-affinity transport permease for gluconate
3723	 53.12	0	4255182..4255757	-	191	30065301	yhgI	S4328	-	putative DNA uptake protein
3724	 55.70	+1	4255816..4256499	-	227	161486382	yhgH	S4330	-	gluconate periplasmic binding protein
3725	 55.89	+1	4256537..4257325	+	262	30065303	bioH	S4329	-	carboxylesterase BioH
3726	 55.30	0	4258051..4258956	-	301	161486381	-	S4331	-	insertion element IS2 transposase InsD
3727	 53.01	0	4258914..4259279	-	121	161486380	-	S4332	-	insertion sequence 2 OrfA protein
3728	 47.86	0	4259355..4260242	-	295	30065306	yhgA	S4333	-	hypothetical protein
3729	 55.27	0	4260445..4260681	-	78	30065307	yhgG	S4334	-	hypothetical protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.