IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3572	 40.94	-2	4065807..4066148	+	113	30065150	yiaB	S4162	-	hypothetical protein
3573	 42.01	-2	4066194..4066631	+	145	30065151	yiaA	S4163	-	hypothetical protein
3574	 46.69	-1	4066673..4067668	-	331	30065152	yiaH	S4164	-	hypothetical protein
3575	 55.81	+1	4068237..4069148	+	303	30065153	glyQ	S4165	-	glycyl-tRNA synthetase subunit alpha
3576	 55.70	+1	4069158..4071227	+	689	30065154	glyS	S4166	-	glycyl-tRNA synthetase subunit beta
3577	 52.58	0	4071285..4071788	-	167	30065155	-	S4167	-	IS1 orfB
3578	 52.54	0	4071707..4071982	-	91	30065156	-	S4168	-	IS1 orfA
3579	 50.84	0	4072203..4072499	+	98	30065157	-	S4169	-	hypothetical protein
3580	 42.11	-2	4076000..4076728	-	242	30065158	yhiW	S4171	-	putative ARAC-type regulatory protein
3581	 41.21	-2	4077096..4077920	-	274	30065159	yhiX	S4172	-	DNA-binding transcriptional regulator GadX
3582	 53.89	0	4078290..4079690	-	466	30065160	gadA	S4173	-	glutamate decarboxylase isozyme
3583	 48.50	0	4079901..4081298	-	465	30065161	yhjA	S4174	-	putative cytochrome C peroxidase
3584	 52.98	0	4081357..4081860	-	167	30065162	-	S4175	-	IS1 orfB
3585	 52.90	0	4081779..4082054	-	91	30065163	-	S4177	-	IS1 orfA
3586	 42.96	-2	4082600..4083451	+	283	30065164	-	S4178	-	IS150 putative transposase
3587	 48.36	0	4083892..4084104	-	70	30065165	cspA	S4179	-	major cold shock protein
3588	 40.48	-2	4084550..4084675	-	41	30065166	yiaG	S4180	-	hypothetical protein
3589	 49.70	0	4084989..4085819	+	276	30065167	yiaF	S4181	-	hypothetical protein
3590	 52.00	0	4085869..4086843	-	324	30065168	yiaE	S4182	-	2-hydroxyacid dehydrogenase
3591	 59.33	+1	4086947..4087573	-	208	30065169	yiaD	S4183	-	putative outer membrane lipoprotein
3592	 54.56	0	4087814..4090093	+	759	30065170	bisC	S4184	-	biotin sulfoxide reductase
3593	 52.15	0	4090062..4090502	-	146	30065171	yiaC	S4185	-	hypothetical protein
3594	 49.82	0	4090499..4091062	-	187	30065172	tag	S4186	-	3-methyl-adenine DNA glycosylase I
3595	 49.93	0	4091220..4091918	+	232	30065173	yhjY	S4187	-	putative lipase
3596	 51.53	0	4092147..4093355	+	402	30065174	yhjX	S4188	-	putative resistance protein
3597	 50.30	0	4093679..4095370	+	563	161486388	yhjW	S4189	-	phosphoethanolamine transferase
3598	 51.87	0	4096282..4097889	+	535	30065176	dppA	S4191	-	dipeptide transport protein
3599	 56.18	+1	4098197..4099216	+	339	30065177	dppB	S4192	-	dipeptide transporter permease DppB
3600	 58.91	+1	4099226..4100128	+	300	30065178	dppC	S4193	-	dipeptide transporter
3601	 55.89	+1	4100139..4101122	+	327	30065179	dppD	S4194	-	dipeptide transporter ATP-binding subunit
3602	 55.82	+1	4101119..4102123	+	334	30065180	dppF	S4195	-	dipeptide transporter ATP-binding subunit
3603	 44.97	-1	4102153..4103424	-	423	30065181	yhjV	S4196	-	putative transporter protein
3604	 52.26	0	4104577..4106256	-	559	30065182	yhjU	S4197	-	hypothetical protein
3605	 47.92	0	4106253..4106444	-	63	30065183	yhjT	S4198	-	hypothetical protein
3606	 48.92	0	4106441..4108012	-	523	30065184	yhjS	S4199	-	putative protease
3607	 46.03	-1	4108285..4108473	+	62	30065185	yhjR	S4200	-	hypothetical protein
3608	 54.05	0	4108485..4109237	+	250	30065186	yhjQ	S4201	-	cell division protein
3609	 54.76	0	4111892..4114201	+	769	30065187	yhjN	S4203	-	cellulose synthase regulator protein
3610	 54.11	0	4114208..4115314	+	368	30065188	yhjM	S4204	-	endo-1,4-D-glucanase
3611	 52.41	0	4117746..4119695	+	649	30065189	yhjK	S4206	-	putative phosphodiesterase
3612	 51.67	0	4119885..4121171	+	428	30065190	dctA	S4207	-	C4-dicarboxylate transporter DctA
3613	 54.04	0	4121392..4122888	+	498	30065191	yhjJ	S4208	-	hypothetical protein
3614	 54.48	0	4122984..4124132	-	382	30065192	kdgK	S4209	-	ketodeoxygluconokinase
3615	 52.86	0	4124145..4124912	+	255	30065193	yhjH	S4210	-	EAL domain-containing protein
3616	 52.98	0	4124982..4127042	+	686	30065194	yhjG	S4211	-	hypothetical protein
3617	 56.01	+1	4127224..4128546	-	440	30065195	yhjE	S4212	-	putative transport protein
3618	 52.66	0	4128957..4129970	-	337	30065196	yhjD	S4213	-	hypothetical protein
3619	 52.16	0	4130019..4130990	-	323	30065197	yhjC	S4214	-	putative transcriptional regulator LYSR-type
3620	 47.93	0	4131438..4132040	+	200	30065198	yhjB	S4215	-	putative regulator
3621	 54.25	0	4132056..4133384	-	442	30065199	-	S4216	-	IS4 orf
3622	 53.88	0	4133529..4135178	-	549	30065200	treF	S4217	-	trehalase
3623	 52.90	0	4135449..4135724	+	91	30065201	-	S4218	-	IS1 orfA
3624	 52.78	0	4135643..4136146	+	167	30065202	-	S4219	-	IS1 orfB
3625	 32.95	-2	4137898..4138425	-	175	30065203	yhiE	S4221	-	hypothetical protein
3626	 46.77	-1	4139224..4139796	-	190	30065204	hdeD	S4222	-	acid-resistance membrane protein
3627	 42.64	-2	4140051..4140383	+	110	30065205	hdeA	S4223	-	acid-resistance protein
3628	 39.53	-2	4140487..4140825	+	112	30065206	hdeB	S4224	-	acid-resistance protein
3629	 38.98	-2	4141577..4142107	-	176	30065207	yhiF	S4226	-	hypothetical protein
3630	 44.67	-1	4142263..4142862	-	199	30065208	slp	S4227	-	outer membrane protein induced after carbon starvation
3631	 45.87	-1	4144880..4145836	-	318	30065209	-	S4229	-	hypothetical protein
3632	 52.78	0	4145867..4146370	-	167	30065210	-	S4230	-	IS1 orfB
3633	 52.90	0	4146289..4146564	-	91	30065211	-	S4231	-	IS1 orfA
3634	 49.86	0	4146620..4146964	+	114	30065212	arsR	S4232	-	DNA-binding transcriptional repressor ArsR
3635	 54.50	0	4147018..4148307	+	429	30065213	arsB	S4233	-	arsenical pump membrane protein
3636	 52.11	0	4148320..4148745	+	141	30065214	arsC	S4234	-	arsenate reductase
3637	 52.90	0	4148901..4149176	+	91	30065215	-	S4235	-	IS1 orfB
3638	 52.98	0	4149095..4149598	+	167	30065216	-	S4236	-	IS1 orfB
3639	 54.32	0	4150511..4151863	-	450	30065217	gor	S4237	-	glutathione reductase
3640	 55.28	0	4151935..4152777	-	280	30065218	yhiR	S4238	-	hypothetical protein
3641	 55.21	0	4152980..4155022	+	680	30065219	prlC	S4239	-	oligopeptidase A
3642	 59.10	+1	4155030..4155782	+	250	30065220	yhiQ	S4240	-	putative methyltransferase
3643	 48.51	0	4157618..4158052	-	144	30065221	uspA	S4242	-	universal stress protein
3644	 47.02	-1	4158446..4158781	+	111	30065222	yhiO	S4243	-	universal stress protein UspB
3645	 54.00	0	4158852..4160351	-	499	30065223	pitA	S4244	-	low-affinity phosphate transport protein
3646	 54.00	0	4160583..4161782	+	399	30065224	yhiN	S4245	-	hypothetical protein
3647	 52.54	0	4162311..4162586	+	91	30065225	-	S4246	-	IS1 orfA
3648	 52.98	0	4162505..4163008	+	167	30065226	-	S4247	-	IS1 orfB
3649	 46.33	-1	4163019..4163318	-	99	30065227	-	S4248	-	IS600 orfA
3650	 50.29	0	4163583..4164608	+	341	30065228	-	S4249	-	hypothetical protein
3651	 42.07	-2	4166011..4166571	+	186	30065229	-	S4250	-	chaperone
3652	 43.43	-2	4166615..4167694	+	359	30065230	-	S4254	-	fimbrial protein remnant
3653	 55.30	0	4167949..4168854	-	301	161486387	-	S4252	-	insertion element IS2 transposase InsD
3654	 53.01	0	4168812..4169177	-	121	161486386	-	S4253	-	insertion sequence 2 OrfA protein
3655	 46.59	-1	4170556..4171068	+	170	30065233	-	S4255	-	hypothetical protein
3656	 37.27	-2	4171175..4171936	-	253	30065234	-	S4836	-	hypothetical protein
3657	 35.56	-2	4172182..4172946	+	254	30065235	-	S4837	-	hypothetical protein
3658	 35.66	-2	4172900..4173415	+	171	30065236	-	S4838	-	hypothetical protein
3659	 37.52	-2	4176769..4178391	+	540	30065237	yhiJ	S4259	-	hypothetical protein
3660	 59.18	+1	4178757..4179824	+	355	30065238	yhiI	S4260	-	hypothetical protein
3661	 56.65	+1	4179821..4182556	+	911	30065239	yhiH	S4261	-	putative ATP-binding component of a transport system
3662	 54.67	0	4182556..4183680	+	374	30065240	yhhJ	S4262	-	putative transporter
3663	 43.33	-2	4184011..4184370	+	119	30065241	-	S4263	-	hypothetical protein
3664	 55.72	+1	4184490..4184891	-	133	30065242	yhhG	S4264	-	nickel responsive regulator
3665	 55.76	+1	4184897..4185703	-	268	30065243	nikE	S4265	-	nickel transporter ATP-binding protein
3666	 58.95	+1	4185700..4186464	-	254	30065244	nikD	S4266	-	nickel transporter ATP-binding protein
3667	 60.31	+2	4186464..4187297	-	277	30065245	nikC	S4267	-	nickel transporter permease NikC
3668	 57.99	+1	4187294..4188238	-	314	30065246	nikB	S4268	-	nickel transporter permease NikB
3669	 53.40	0	4188238..4189812	-	524	30065247	nikA	S4269	-	periplasmic binding protein for nickel
3670	 56.63	+1	4189923..4190510	-	195	30065248	yhhU	S4270	-	holo-(acyl carrier protein) synthase 2
3671	 51.24	0	4190565..4191614	-	349	30065249	yhhT	S4271	-	hypothetical protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.