IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3533	 56.15	+1	4014524..4015807	-	427	161486389	yibP	S4116	-	hypothetical protein
3534	 53.27	0	4015817..4017361	-	514	30065112	yibO	S4117	-	phosphoglyceromutase
3535	 50.00	0	4017606..4018037	+	143	30065113	yibN	S4118	-	hypothetical protein
3536	 51.19	0	4018179..4018430	+	83	30065114	grxC	S4119	-	glutaredoxin 3
3537	 51.07	0	4018493..4018960	+	155	30065115	secB	S4120	-	preprotein translocase subunit SecB
3538	 56.57	+1	4018960..4019979	+	339	30065116	gpsA	S4121	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
3539	 53.16	0	4020059..4020880	+	273	30065117	cysE	S4122	-	serine acetyltransferase
3540	 55.06	0	4020933..4021406	-	157	30065118	yibK	S4123	-	putative tRNA/rRNA methyltransferase YibK
3541	 55.67	+1	4021602..4022792	-	396	30065119	lldD	S4124	-	L-lactate dehydrogenase
3542	 54.18	0	4022789..4023565	-	258	30065120	lldR	S4125	-	DNA-binding transcriptional repressor LldR
3543	 55.07	0	4023565..4025220	-	551	30065121	lldP	S4126	-	L-lactate permease
3544	 52.54	0	4031481..4031756	+	91	30065122	-	S4130	-	IS1 orfA
3545	 52.58	0	4031675..4032178	+	167	30065123	-	S4131	-	IS1 orfB
3546	 50.96	0	4032297..4032659	-	120	30065124	yibL	S4132	-	hypothetical protein
3547	 51.19	0	4033164..4033751	-	195	30065125	mtlR	S4133	-	mannitol repressor protein
3548	 53.00	0	4033751..4034899	-	382	30065126	mtlD	S4134	-	mannitol-1-phosphate 5-dehydrogenase
3549	 53.40	0	4034994..4036907	-	637	30065127	mtlA	S4135	-	PTS system, mannitol-specific enzyme IIABC components
3550	 51.24	0	4037444..4037806	+	120	30065128	yibI	S4136	-	hypothetical protein
3551	 52.21	0	4037809..4038894	+	361	30065129	yibH	S4137	-	hypothetical protein
3552	 52.87	0	4038965..4039573	+	202	30065130	yibF	S4138	-	glutathione S-transferase
3553	 56.39	+1	4039671..4041062	+	463	30065131	selA	S4139	-	selenocysteine synthase
3554	 56.21	+1	4041059..4042903	+	614	30065132	selB	S4140	-	selenocysteinyl-tRNA-specific translation factor
3555	 50.35	0	4043093..4044244	+	383	30065133	yiaY	S4141	-	putative alcohol dehydrogenase
3556	 54.57	0	4044319..4045947	+	542	30065134	aldB	S4142	-	aldehyde dehydrogenase B (lactaldehyde dehydrogenase)
3557	 52.98	0	4046643..4047146	-	167	30065135	-	S4143	-	IS1 orfB
3558	 52.54	0	4047065..4047340	-	91	30065136	-	S4144	-	IS1 orfA
3559	 50.89	0	4047374..4048666	-	430	30065137	-	S4145	-	hypothetical protein
3560	 53.17	0	4049001..4049504	-	167	30065138	-	S4147	-	IS1 orfB
3561	 52.54	0	4049423..4049698	-	91	30065139	-	S4148	-	IS1 orfA
3562	 53.65	0	4049913..4050911	-	332	30065140	yiaK	S4150	-	2,3-diketo-L-gulonate reductase
3563	 52.18	0	4051111..4051959	+	282	30065141	yiaJ	S4151	-	putative regulator
3564	 53.80	0	4052061..4052534	+	157	30065142	yiaI	S4152	-	hypothetical protein
3565	 52.39	0	4052685..4053938	-	417	30065143	avtA	S4153	-	valine--pyruvate transaminase
3566	 52.29	0	4054116..4056146	-	676	30065144	malS	S4154	-	periplasmic alpha-amylase precursor
3567	 47.64	0	4056466..4057290	+	274	30065145	bax	S4155	-	hypothetical protein
3568	 53.55	0	4058654..4059835	-	393	30065146	xylH	S4157	-	putative xylose transporter, membrane component
3569	 47.02	-1	4059813..4061354	-	513	30065147	xylG	S4158	-	xylose transporter ATP-binding subunit
3570	 43.30	-2	4061432..4062424	-	330	30065148	xylF	S4159	-	D-xylose transporter subunit XylF
3571	 54.16	0	4064184..4065638	+	484	30065149	xylB	S4161	-	xylulokinase
3572	 40.94	-2	4065807..4066148	+	113	30065150	yiaB	S4162	-	hypothetical protein
3573	 42.01	-2	4066194..4066631	+	145	30065151	yiaA	S4163	-	hypothetical protein
3574	 46.69	-1	4066673..4067668	-	331	30065152	yiaH	S4164	-	hypothetical protein
3575	 55.81	+1	4068237..4069148	+	303	30065153	glyQ	S4165	-	glycyl-tRNA synthetase subunit alpha
3576	 55.70	+1	4069158..4071227	+	689	30065154	glyS	S4166	-	glycyl-tRNA synthetase subunit beta
3577	 52.58	0	4071285..4071788	-	167	30065155	-	S4167	-	IS1 orfB
3578	 52.54	0	4071707..4071982	-	91	30065156	-	S4168	-	IS1 orfA
3579	 50.84	0	4072203..4072499	+	98	30065157	-	S4169	-	hypothetical protein
3580	 42.11	-2	4076000..4076728	-	242	30065158	yhiW	S4171	-	putative ARAC-type regulatory protein
3581	 41.21	-2	4077096..4077920	-	274	30065159	yhiX	S4172	-	DNA-binding transcriptional regulator GadX
3582	 53.89	0	4078290..4079690	-	466	30065160	gadA	S4173	-	glutamate decarboxylase isozyme
3583	 48.50	0	4079901..4081298	-	465	30065161	yhjA	S4174	-	putative cytochrome C peroxidase
3584	 52.98	0	4081357..4081860	-	167	30065162	-	S4175	-	IS1 orfB
3585	 52.90	0	4081779..4082054	-	91	30065163	-	S4177	-	IS1 orfA
3586	 42.96	-2	4082600..4083451	+	283	30065164	-	S4178	-	IS150 putative transposase
3587	 48.36	0	4083892..4084104	-	70	30065165	cspA	S4179	-	major cold shock protein
3588	 40.48	-2	4084550..4084675	-	41	30065166	yiaG	S4180	-	hypothetical protein
3589	 49.70	0	4084989..4085819	+	276	30065167	yiaF	S4181	-	hypothetical protein
3590	 52.00	0	4085869..4086843	-	324	30065168	yiaE	S4182	-	2-hydroxyacid dehydrogenase
3591	 59.33	+1	4086947..4087573	-	208	30065169	yiaD	S4183	-	putative outer membrane lipoprotein
3592	 54.56	0	4087814..4090093	+	759	30065170	bisC	S4184	-	biotin sulfoxide reductase
3593	 52.15	0	4090062..4090502	-	146	30065171	yiaC	S4185	-	hypothetical protein
3594	 49.82	0	4090499..4091062	-	187	30065172	tag	S4186	-	3-methyl-adenine DNA glycosylase I
3595	 49.93	0	4091220..4091918	+	232	30065173	yhjY	S4187	-	putative lipase
3596	 51.53	0	4092147..4093355	+	402	30065174	yhjX	S4188	-	putative resistance protein
3597	 50.30	0	4093679..4095370	+	563	161486388	yhjW	S4189	-	phosphoethanolamine transferase
3598	 51.87	0	4096282..4097889	+	535	30065176	dppA	S4191	-	dipeptide transport protein
3599	 56.18	+1	4098197..4099216	+	339	30065177	dppB	S4192	-	dipeptide transporter permease DppB
3600	 58.91	+1	4099226..4100128	+	300	30065178	dppC	S4193	-	dipeptide transporter
3601	 55.89	+1	4100139..4101122	+	327	30065179	dppD	S4194	-	dipeptide transporter ATP-binding subunit
3602	 55.82	+1	4101119..4102123	+	334	30065180	dppF	S4195	-	dipeptide transporter ATP-binding subunit
3603	 44.97	-1	4102153..4103424	-	423	30065181	yhjV	S4196	-	putative transporter protein
3604	 52.26	0	4104577..4106256	-	559	30065182	yhjU	S4197	-	hypothetical protein
3605	 47.92	0	4106253..4106444	-	63	30065183	yhjT	S4198	-	hypothetical protein
3606	 48.92	0	4106441..4108012	-	523	30065184	yhjS	S4199	-	putative protease
3607	 46.03	-1	4108285..4108473	+	62	30065185	yhjR	S4200	-	hypothetical protein
3608	 54.05	0	4108485..4109237	+	250	30065186	yhjQ	S4201	-	cell division protein
3609	 54.76	0	4111892..4114201	+	769	30065187	yhjN	S4203	-	cellulose synthase regulator protein
3610	 54.11	0	4114208..4115314	+	368	30065188	yhjM	S4204	-	endo-1,4-D-glucanase
3611	 52.41	0	4117746..4119695	+	649	30065189	yhjK	S4206	-	putative phosphodiesterase
3612	 51.67	0	4119885..4121171	+	428	30065190	dctA	S4207	-	C4-dicarboxylate transporter DctA
3613	 54.04	0	4121392..4122888	+	498	30065191	yhjJ	S4208	-	hypothetical protein
3614	 54.48	0	4122984..4124132	-	382	30065192	kdgK	S4209	-	ketodeoxygluconokinase
3615	 52.86	0	4124145..4124912	+	255	30065193	yhjH	S4210	-	EAL domain-containing protein
3616	 52.98	0	4124982..4127042	+	686	30065194	yhjG	S4211	-	hypothetical protein
3617	 56.01	+1	4127224..4128546	-	440	30065195	yhjE	S4212	-	putative transport protein
3618	 52.66	0	4128957..4129970	-	337	30065196	yhjD	S4213	-	hypothetical protein
3619	 52.16	0	4130019..4130990	-	323	30065197	yhjC	S4214	-	putative transcriptional regulator LYSR-type
3620	 47.93	0	4131438..4132040	+	200	30065198	yhjB	S4215	-	putative regulator
3621	 54.25	0	4132056..4133384	-	442	30065199	-	S4216	-	IS4 orf
3622	 53.88	0	4133529..4135178	-	549	30065200	treF	S4217	-	trehalase
3623	 52.90	0	4135449..4135724	+	91	30065201	-	S4218	-	IS1 orfA
3624	 52.78	0	4135643..4136146	+	167	30065202	-	S4219	-	IS1 orfB
3625	 32.95	-2	4137898..4138425	-	175	30065203	yhiE	S4221	-	hypothetical protein
3626	 46.77	-1	4139224..4139796	-	190	30065204	hdeD	S4222	-	acid-resistance membrane protein
3627	 42.64	-2	4140051..4140383	+	110	30065205	hdeA	S4223	-	acid-resistance protein
3628	 39.53	-2	4140487..4140825	+	112	30065206	hdeB	S4224	-	acid-resistance protein
3629	 38.98	-2	4141577..4142107	-	176	30065207	yhiF	S4226	-	hypothetical protein
3630	 44.67	-1	4142263..4142862	-	199	30065208	slp	S4227	-	outer membrane protein induced after carbon starvation
3631	 45.87	-1	4144880..4145836	-	318	30065209	-	S4229	-	hypothetical protein
3632	 52.78	0	4145867..4146370	-	167	30065210	-	S4230	-	IS1 orfB
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.