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Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3489 44.97 -1 3967276..3968487 - 403 30065067 - S4835 - putative integrase 3490 52.01 0 3970539..3972857 + 772 30065068 yicI S4073 - alpha-xylosidase YicI 3491 54.33 0 3972910..3974619 - 569 30065069 yicH S4074 - hypothetical protein 3492 55.03 0 3974740..3976131 - 463 30065070 yicE S4075 - putative transport protein 3493 53.90 0 3976411..3977616 + 401 30065071 gltS S4076 - glutamate transport protein 3494 57.01 +1 3977650..3979731 - 693 30065072 recG S4077 - ATP-dependent DNA helicase RecG 3495 55.22 0 3979737..3980426 - 229 30065073 spoU S4078 - tRNA guanosine-2'-O-methyltransferase 3496 53.77 0 3980433..3982541 - 702 30065074 spoT S4079 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3497 53.26 0 3982560..3982835 - 91 30065075 rpoZ S4080 - DNA-directed RNA polymerase subunit omega 3498 49.04 0 3982890..3983513 - 207 30065076 gmk S4081 - guanylate kinase 3499 52.76 0 3983771..3985453 + 560 30065077 ligB S4082 - NAD-dependent DNA ligase LigB 3500 52.53 0 3985450..3986121 - 223 30065078 yicG S4083 - hypothetical protein 3501 45.70 -1 3986358..3987182 - 274 30065079 dinD S4084 - DNA-damage-inducible protein D 3502 53.36 0 3987403..3988266 - 287 30065080 yicC S4085 - hypothetical protein 3503 56.35 +1 3988393..3989109 + 238 30065081 rph S4086 - ribonuclease PH 3504 52.80 0 3989175..3989816 + 213 30065082 pyrE S4087 - orotate phosphoribosyltransferase 3505 53.27 0 3989853..3990449 - 198 161486392 slmA S4088 - nucleoid occlusion protein 3506 54.68 0 3990556..3991014 - 152 30065084 dut S4089 - deoxyuridine 5'-triphosphate nucleotidohydrolase 3507 53.15 0 3990992..3992212 - 406 161486391 dfp S4090 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3508 47.70 0 3992378..3993052 + 224 161486390 radC S4091 - DNA repair protein RadC 3509 53.16 0 3993269..3993505 + 78 30065087 rpmB S4092 - 50S ribosomal protein L28 3510 39.88 -2 3993526..3993693 + 55 30065088 rpmG S4093 - 50S ribosomal protein L33 3511 53.95 0 3993791..3994600 + 269 30065089 mutM S4094 - formamidopyrimidine-DNA glycosylase 3512 52.71 0 3994639..3995118 - 159 30065090 coaD S4095 - phosphopantetheine adenylyltransferase 3513 53.91 0 3995126..3996403 - 425 30065091 kdtA S4096 - 3-deoxy-D-manno-octulosonic-acid transferase 3514 52.90 0 3996537..3996812 + 91 30065092 - S4097 - IS1 orfA 3515 52.98 0 3996731..3997234 + 167 30065093 - S4098 - IS1 orfB 3516 46.65 -1 3997592..3998650 + 352 30065094 waaQ S4099 - lipopolysaccharide core biosynthesis protein 3517 48.36 0 3998647..3999771 + 374 30065095 waaG S4100 - LPS alpha1,3-glucosyltransferase 3518 47.83 0 3999755..4000561 + 268 30065096 waaP S4101 - lipopolysaccharide core biosynthesis protein 3519 31.05 -2 4000604..4001611 + 335 30065097 waaL S4102 - UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase 3520 30.51 -2 4001637..4002344 + 235 30065098 waaY S4103 - lipopolysaccharide core biosynthesis protein 3521 30.87 -2 4002369..4003382 + 337 30065099 waaJ S4104 - putative UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase 3522 36.75 -2 4003391..4004533 + 380 30065100 waaD S4105 - lipopolysaccharide 1,2-N- acetylglucosaminetransferase 3523 35.32 -2 4004569..4005777 - 402 30065101 waaI S4106 - lipid A-core, surface polymer ligase 3524 50.26 0 4005774..4006736 - 320 30065102 rfaC S4107 - ADP-heptose:LPS heptosyl transferase I 3525 53.87 0 4006770..4007816 - 348 30065103 rfaF S4108 - ADP-heptose:LPS heptosyltransferase II 3526 50.91 0 4007826..4008758 - 310 30065104 rfaD S4109 - ADP-L-glycero-D-mannoheptose-6-epimerase 3527 54.39 0 4010194..4011390 + 398 30065105 kbl S4110 - 2-amino-3-ketobutyrate coenzyme A ligase 3528 52.44 0 4011400..4012425 + 341 30065106 tdh S4111 - L-threonine 3-dehydrogenase 3529 52.90 0 4012655..4012930 + 91 30065107 - S4112 - IS1 orfA 3530 52.78 0 4012849..4013352 + 167 30065108 - S4113 - IS1 orfB 3531 53.19 0 4013434..4013574 + 46 30065109 yibD S4114 - putative regulator 3532 52.76 0 4013561..4014394 - 277 30065110 yibQ S4115 - hypothetical protein 3533 56.15 +1 4014524..4015807 - 427 161486389 yibP S4116 - hypothetical protein 3534 53.27 0 4015817..4017361 - 514 30065112 yibO S4117 - phosphoglyceromutase 3535 50.00 0 4017606..4018037 + 143 30065113 yibN S4118 - hypothetical protein 3536 51.19 0 4018179..4018430 + 83 30065114 grxC S4119 - glutaredoxin 3 3537 51.07 0 4018493..4018960 + 155 30065115 secB S4120 - preprotein translocase subunit SecB 3538 56.57 +1 4018960..4019979 + 339 30065116 gpsA S4121 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3539 53.16 0 4020059..4020880 + 273 30065117 cysE S4122 - serine acetyltransferase 3540 55.06 0 4020933..4021406 - 157 30065118 yibK S4123 - putative tRNA/rRNA methyltransferase YibK 3541 55.67 +1 4021602..4022792 - 396 30065119 lldD S4124 - L-lactate dehydrogenase 3542 54.18 0 4022789..4023565 - 258 30065120 lldR S4125 - DNA-binding transcriptional repressor LldR 3543 55.07 0 4023565..4025220 - 551 30065121 lldP S4126 - L-lactate permease 3544 52.54 0 4031481..4031756 + 91 30065122 - S4130 - IS1 orfA 3545 52.58 0 4031675..4032178 + 167 30065123 - S4131 - IS1 orfB 3546 50.96 0 4032297..4032659 - 120 30065124 yibL S4132 - hypothetical protein 3547 51.19 0 4033164..4033751 - 195 30065125 mtlR S4133 - mannitol repressor protein 3548 53.00 0 4033751..4034899 - 382 30065126 mtlD S4134 - mannitol-1-phosphate 5-dehydrogenase 3549 53.40 0 4034994..4036907 - 637 30065127 mtlA S4135 - PTS system, mannitol-specific enzyme IIABC components 3550 51.24 0 4037444..4037806 + 120 30065128 yibI S4136 - hypothetical protein 3551 52.21 0 4037809..4038894 + 361 30065129 yibH S4137 - hypothetical protein 3552 52.87 0 4038965..4039573 + 202 30065130 yibF S4138 - glutathione S-transferase 3553 56.39 +1 4039671..4041062 + 463 30065131 selA S4139 - selenocysteine synthase 3554 56.21 +1 4041059..4042903 + 614 30065132 selB S4140 - selenocysteinyl-tRNA-specific translation factor 3555 50.35 0 4043093..4044244 + 383 30065133 yiaY S4141 - putative alcohol dehydrogenase 3556 54.57 0 4044319..4045947 + 542 30065134 aldB S4142 - aldehyde dehydrogenase B (lactaldehyde dehydrogenase) 3557 52.98 0 4046643..4047146 - 167 30065135 - S4143 - IS1 orfB 3558 52.54 0 4047065..4047340 - 91 30065136 - S4144 - IS1 orfA 3559 50.89 0 4047374..4048666 - 430 30065137 - S4145 - hypothetical protein 3560 53.17 0 4049001..4049504 - 167 30065138 - S4147 - IS1 orfB 3561 52.54 0 4049423..4049698 - 91 30065139 - S4148 - IS1 orfA 3562 53.65 0 4049913..4050911 - 332 30065140 yiaK S4150 - 2,3-diketo-L-gulonate reductase 3563 52.18 0 4051111..4051959 + 282 30065141 yiaJ S4151 - putative regulator 3564 53.80 0 4052061..4052534 + 157 30065142 yiaI S4152 - hypothetical protein 3565 52.39 0 4052685..4053938 - 417 30065143 avtA S4153 - valine--pyruvate transaminase 3566 52.29 0 4054116..4056146 - 676 30065144 malS S4154 - periplasmic alpha-amylase precursor 3567 47.64 0 4056466..4057290 + 274 30065145 bax S4155 - hypothetical protein 3568 53.55 0 4058654..4059835 - 393 30065146 xylH S4157 - putative xylose transporter, membrane component 3569 47.02 -1 4059813..4061354 - 513 30065147 xylG S4158 - xylose transporter ATP-binding subunit 3570 43.30 -2 4061432..4062424 - 330 30065148 xylF S4159 - D-xylose transporter subunit XylF 3571 54.16 0 4064184..4065638 + 484 30065149 xylB S4161 - xylulokinase 3572 40.94 -2 4065807..4066148 + 113 30065150 yiaB S4162 - hypothetical protein 3573 42.01 -2 4066194..4066631 + 145 30065151 yiaA S4163 - hypothetical protein 3574 46.69 -1 4066673..4067668 - 331 30065152 yiaH S4164 - hypothetical protein 3575 55.81 +1 4068237..4069148 + 303 30065153 glyQ S4165 - glycyl-tRNA synthetase subunit alpha 3576 55.70 +1 4069158..4071227 + 689 30065154 glyS S4166 - glycyl-tRNA synthetase subunit beta 3577 52.58 0 4071285..4071788 - 167 30065155 - S4167 - IS1 orfB 3578 52.54 0 4071707..4071982 - 91 30065156 - S4168 - IS1 orfA 3579 50.84 0 4072203..4072499 + 98 30065157 - S4169 - hypothetical protein 3580 42.11 -2 4076000..4076728 - 242 30065158 yhiW S4171 - putative ARAC-type regulatory protein 3581 41.21 -2 4077096..4077920 - 274 30065159 yhiX S4172 - DNA-binding transcriptional regulator GadX 3582 53.89 0 4078290..4079690 - 466 30065160 gadA S4173 - glutamate decarboxylase isozyme 3583 48.50 0 4079901..4081298 - 465 30065161 yhjA S4174 - putative cytochrome C peroxidase 3584 52.98 0 4081357..4081860 - 167 30065162 - S4175 - IS1 orfB 3585 52.90 0 4081779..4082054 - 91 30065163 - S4177 - IS1 orfA 3586 42.96 -2 4082600..4083451 + 283 30065164 - S4178 - IS150 putative transposase 3587 48.36 0 4083892..4084104 - 70 30065165 cspA S4179 - major cold shock protein 3588 40.48 -2 4084550..4084675 - 41 30065166 yiaG S4180 - hypothetical protein 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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