version 1.0
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3429 54.74 0 3899541..3901955 - 804 30065007 gyrB S4006 - DNA gyrase subunit B 3430 54.28 0 3901984..3903057 - 357 30065008 recF S4007 - recombination protein F 3431 54.13 0 3903057..3904157 - 366 30065009 dnaN S4008 - DNA polymerase III subunit beta 3432 53.63 0 3904162..3905565 - 467 30065010 dnaA S4009 - chromosomal replication initiation protein 3433 51.77 0 3906172..3906312 + 46 30065011 rpmH S4010 - 50S ribosomal protein L34 3434 56.11 +1 3906329..3906688 + 119 30065012 rnpA S4011 - ribonuclease P 3435 53.49 0 3906912..3908558 + 548 30065013 yidC S4012 - putative inner membrane protein translocase component YidC 3436 56.63 +1 3908664..3910028 + 454 30065014 trmE S4013 - tRNA modification GTPase TrmE 3437 52.98 0 3910242..3910745 - 167 30065015 - S4014 - IS1 orfB 3438 52.90 0 3910664..3910939 - 91 30065016 - S4015 - IS1 orfA 3439 36.00 -2 3911046..3911120 + 24 30065017 tnaL S4016 - tryptophanase leader peptide 3440 50.35 0 3911341..3912756 + 471 30065018 tnaA S4017 - tryptophanase 3441 46.63 -1 3912847..3914094 + 415 30065019 tnaB S4018 - tryptophan permease TnaB 3442 52.98 0 3914226..3915401 + 391 30065020 yidY S4019 - multidrug efflux system protein MdtL 3443 52.24 0 3916068..3916781 - 237 30065021 - S4021 - IS600 orfB 3444 46.20 -1 3916922..3917224 - 100 30065022 - S4022 - IS600 orfA 3445 52.13 0 3917759..3918508 + 249 30065023 yieE S4024 - hypothetical protein 3446 53.09 0 3918530..3919096 + 188 30065024 yieF S4025 - hypothetical protein 3447 52.47 0 3919150..3920487 - 445 30065025 yieG S4026 - putative membrane / transport protein 3448 48.55 0 3920652..3921308 + 218 30065026 yieH S4027 - 6-phosphogluconate phosphatase 3449 44.09 -1 3921375..3921848 + 157 30065027 yieI S4028 - putative inner membrane protein 3450 50.07 0 3922016..3922690 + 224 30065028 - S4029 - ISSfl3 orfA 3451 54.70 0 3922687..3923037 + 116 30065029 - S4030 - ISSfl3 orfB 3452 52.37 0 3923034..3924635 + 533 30065030 - S4031 - ISSfl3 orfC 3453 49.52 0 3925288..3926010 - 240 30065031 yieK S4033 - putative 6-phosphogluconolactonase 3454 50.34 0 3926012..3927187 - 391 30065032 yieL S4034 - putative xylanase 3455 45.44 -1 3927214..3928791 - 525 30065033 yieC S4035 - putative receptor protein 3456 52.78 0 3929306..3929809 - 167 30065034 - S4036 - IS1 orfB 3457 52.90 0 3929728..3930003 - 91 30065035 - S4037 - IS1 orfA 3458 49.90 0 3930037..3931086 - 349 30065036 bglB S4038 - phospho-beta-glucosidase B cryptic 3459 51.38 0 3931105..3932982 - 625 30065037 bglF S4039 - beta-glucoside-specific PTS system components IIABC 3460 42.58 -2 3933116..3933937 - 273 30065038 bglG S4040 - transcriptional antiterminator BglG 3461 52.20 0 3934224..3934949 - 241 30065039 phoU S4041 - transcriptional regulator PhoU 3462 52.84 0 3934964..3935737 - 257 30065040 pstB S4042 - phosphate transporter subunit 3463 56.90 +1 3935829..3936719 - 296 30065041 pstA S4043 - phosphate transporter permease subunit 3464 55.04 0 3936767..3937678 - 303 30065042 pstC S4044 - phosphate transporter permease subunit 3465 51.59 0 3937765..3938805 - 346 30065043 pstS S4045 - phosphate transporter subunit 3466 53.26 0 3940059..3940334 + 91 30065044 - S4046 - IS1 orfA 3467 47.01 -1 3940913..3943435 - 840 30065045 lpfC S4048 - putative long polar fimbriae 3468 52.73 0 3943581..3943946 + 121 161486396 - S4049 - insertion sequence 2 OrfA protein 3469 55.30 0 3943904..3944809 + 301 161486395 - S4050 - insertion element IS2 transposase InsD 3470 52.64 0 3946459..3948654 - 731 30065048 iutA S4052 - putative ferric siderophore receptor 3471 46.56 -1 3948660..3949997 - 445 30065049 iucD S4053 - lysine:N6-hydroxylase 3472 54.56 0 3949994..3951736 - 580 30065050 iucC S4054 - siderophore biosynthesis protein 3473 56.43 +1 3951736..3952683 - 315 30065051 iucB S4055 - siderophore biosynthesis protein 3474 53.59 0 3952684..3954465 - 593 30065052 iucA S4056 - siderophore biosynthesis protein 3475 56.95 +1 3954544..3955737 + 397 30065053 imm S4057 - putative membrane transport protein 3476 41.15 -2 3955687..3956658 - 323 30065054 shiE S4829 - hypothetical protein 3477 52.90 0 3956539..3956814 + 91 30065055 - S4058 - IS1 orfA 3478 52.58 0 3956733..3957236 + 167 30065056 - S4059 - IS1 orfB 3479 40.35 -2 3957757..3958155 - 132 30065057 shiD S4830 - colV-immunity protein 3480 53.01 0 3959474..3959839 + 121 161486394 - S4060 - insertion sequence 2 OrfA protein 3481 55.08 0 3959797..3960702 + 301 161486393 - S4061 - insertion element IS2 transposase InsD 3482 54.13 0 3961705..3962031 + 108 30065060 - S4062 - IS629 orfA 3483 54.63 0 3962267..3962914 + 215 30065061 - S4063 - IS629 orfB 3484 33.91 -2 3962995..3963513 - 172 30065062 shiC S4831 - hypothetical protein 3485 52.67 0 3963698..3963997 + 99 30065063 - S4064 - IS3 orfA 3486 58.02 +1 3963994..3964386 + 130 30065064 - S4832 - IS3 orfB 3487 47.84 0 3964845..3965306 - 153 30065065 shiB S4833 - hypothetical protein 3488 46.46 -1 3965821..3966864 - 347 30065066 shiA S4834 - hypothetical protein 3489 44.97 -1 3967276..3968487 - 403 30065067 - S4835 - putative integrase 3490 52.01 0 3970539..3972857 + 772 30065068 yicI S4073 - alpha-xylosidase YicI 3491 54.33 0 3972910..3974619 - 569 30065069 yicH S4074 - hypothetical protein 3492 55.03 0 3974740..3976131 - 463 30065070 yicE S4075 - putative transport protein 3493 53.90 0 3976411..3977616 + 401 30065071 gltS S4076 - glutamate transport protein 3494 57.01 +1 3977650..3979731 - 693 30065072 recG S4077 - ATP-dependent DNA helicase RecG 3495 55.22 0 3979737..3980426 - 229 30065073 spoU S4078 - tRNA guanosine-2'-O-methyltransferase 3496 53.77 0 3980433..3982541 - 702 30065074 spoT S4079 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3497 53.26 0 3982560..3982835 - 91 30065075 rpoZ S4080 - DNA-directed RNA polymerase subunit omega 3498 49.04 0 3982890..3983513 - 207 30065076 gmk S4081 - guanylate kinase 3499 52.76 0 3983771..3985453 + 560 30065077 ligB S4082 - NAD-dependent DNA ligase LigB 3500 52.53 0 3985450..3986121 - 223 30065078 yicG S4083 - hypothetical protein 3501 45.70 -1 3986358..3987182 - 274 30065079 dinD S4084 - DNA-damage-inducible protein D 3502 53.36 0 3987403..3988266 - 287 30065080 yicC S4085 - hypothetical protein 3503 56.35 +1 3988393..3989109 + 238 30065081 rph S4086 - ribonuclease PH 3504 52.80 0 3989175..3989816 + 213 30065082 pyrE S4087 - orotate phosphoribosyltransferase 3505 53.27 0 3989853..3990449 - 198 161486392 slmA S4088 - nucleoid occlusion protein 3506 54.68 0 3990556..3991014 - 152 30065084 dut S4089 - deoxyuridine 5'-triphosphate nucleotidohydrolase 3507 53.15 0 3990992..3992212 - 406 161486391 dfp S4090 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3508 47.70 0 3992378..3993052 + 224 161486390 radC S4091 - DNA repair protein RadC 3509 53.16 0 3993269..3993505 + 78 30065087 rpmB S4092 - 50S ribosomal protein L28 3510 39.88 -2 3993526..3993693 + 55 30065088 rpmG S4093 - 50S ribosomal protein L33 3511 53.95 0 3993791..3994600 + 269 30065089 mutM S4094 - formamidopyrimidine-DNA glycosylase 3512 52.71 0 3994639..3995118 - 159 30065090 coaD S4095 - phosphopantetheine adenylyltransferase 3513 53.91 0 3995126..3996403 - 425 30065091 kdtA S4096 - 3-deoxy-D-manno-octulosonic-acid transferase 3514 52.90 0 3996537..3996812 + 91 30065092 - S4097 - IS1 orfA 3515 52.98 0 3996731..3997234 + 167 30065093 - S4098 - IS1 orfB 3516 46.65 -1 3997592..3998650 + 352 30065094 waaQ S4099 - lipopolysaccharide core biosynthesis protein 3517 48.36 0 3998647..3999771 + 374 30065095 waaG S4100 - LPS alpha1,3-glucosyltransferase 3518 47.83 0 3999755..4000561 + 268 30065096 waaP S4101 - lipopolysaccharide core biosynthesis protein 3519 31.05 -2 4000604..4001611 + 335 30065097 waaL S4102 - UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase 3520 30.51 -2 4001637..4002344 + 235 30065098 waaY S4103 - lipopolysaccharide core biosynthesis protein 3521 30.87 -2 4002369..4003382 + 337 30065099 waaJ S4104 - putative UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase 3522 36.75 -2 4003391..4004533 + 380 30065100 waaD S4105 - lipopolysaccharide 1,2-N- acetylglucosaminetransferase 3523 35.32 -2 4004569..4005777 - 402 30065101 waaI S4106 - lipid A-core, surface polymer ligase 3524 50.26 0 4005774..4006736 - 320 30065102 rfaC S4107 - ADP-heptose:LPS heptosyl transferase I 3525 53.87 0 4006770..4007816 - 348 30065103 rfaF S4108 - ADP-heptose:LPS heptosyltransferase II 3526 50.91 0 4007826..4008758 - 310 30065104 rfaD S4109 - ADP-L-glycero-D-mannoheptose-6-epimerase 3527 54.39 0 4010194..4011390 + 398 30065105 kbl S4110 - 2-amino-3-ketobutyrate coenzyme A ligase 3528 52.44 0 4011400..4012425 + 341 30065106 tdh S4111 - L-threonine 3-dehydrogenase 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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